Clone Sequence Records
BS03224.5prime Sequence
684 bp (683 high quality bases) assembled on 2005-11-30
> BS03224.5prime
GAAGTTATCAGTCGACATGCGAGCCCAGGATCTGCTGCTGCTTGCCACCG
CTTTAATCGGCGCTTACCTACCGCTCACCGCCGCCTGTTCCTCGCGTGCC
ATCGCTAAGCCGCGGCCAACAGCTGCACCGATCCTGCCGCCGGATAATGT
GGAAATATCCACAACGCCGAGACCGAATGTCACCTTCCCGATCTTCGCCT
GTCCACCGACCTATGTCGCCTGGTATTGCCTGAACGATGGCACCTGCTTT
ACGGTGAAGATCCACAATGAAATCCTATACAACTGCGAATGTGCGCTGGG
ATTTATGGGTCCGAGGTGCGAGTACAAGGAGATTGATGGCTCGTACCTGC
CAACCAGGAACCGTGTGATGCTAGAGAAGGCCAGCATTGTTAGCGGAGCA
ACGCTGGCCCTTCTGTTTATGGCCATGTGCTGTGTGGTTTTGTATCTGCG
ACACGAGAAGCTGCAAAAACAAAAGCTGCACGACAGCACCACAACCACAA
CGACCGACGGTGGCTGTCAGAACGAGGGCATGGACGAGGTGGATGGCTTG
CGACCCTTACGTCCAGTGAGACGTCCCTTTGGACCCTGCCGCATCCTATC
GCTGGAGGAGGCCCACCTTCAAGCGAAAGCCTCCAATCGCCCCAGGCATT
GCAACGAACTTTTGCGCTAAAAGCTTTCTAGACC
BS03224.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:29:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32179-PA | 654 | Krn-RA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:32:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Krn-RA | 1354 | CG32179-RA | 384..1037 | 17..670 | 3270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:32:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17649879..17650532 | 670..17 | 3270 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:32:24 has no hits.
BS03224.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:21:50 Download gff for
BS03224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Krn-PA | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:35:12 Download gff for
BS03224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32179-PA | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:33:48 Download gff for
BS03224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Krn-RA | 371..1039 | 3..675 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:39:36 Download gff for
BS03224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Krn-RA | 371..1039 | 3..675 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:39:36 Download gff for
BS03224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17649877..17650545 | 3..675 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:33:48 Download gff for
BS03224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17642977..17643645 | 3..675 | 98 | | Minus |
BS03224.3prime Sequence
684 bp (683 high quality bases) assembled on 2005-11-30
> BS03224.3prime
ATGGTCTAGAAAGCTTTTAGCGCAAAAGTTCGTTGCAATGCCTGGGGCGA
TTGGAGGCTTTCGCTTGAAGGTGGGCCTCCTCCAGCGATAGGATGCGGCA
GGGTCCAAAGGGACGTCTCACTGGACGTAAGGGTCGCAAGCCATCCACCT
CGTCCATGCCCTCGTTCTGACAGCCACCGTCGGTCGTTGTGGTTGTGGTG
CTGTCGTGCAGCTTTTGTTTTTGCAGCTTCTCGTGTCGCAGATACAAAAC
CACACAGCACATGGCCATAAACAGAAGGGCCAGCGTTGCTCCGCTAACAA
TGCTGGCCTTCTCTAGCATCACACGGTTCCTGGTTGGCAGGTACGAGCCA
TCAATCTCCTTGTACTCGCACCTCGGACCCATAAATCCCAGCGCACATTC
GCAGTTGTATAGGATTTCATTGTGGATCTTCACCGTAAAGCAGGTGCCAT
CGTTCAGGCAATACCAGGCGACATAGGTCGGTGGACAGGCGAAGATCGGG
AAGGTGACATTCGGTCTCGGCGTTGTGGATATTTCCACATTATCCGGCGG
CAGGATCGGTGCAGCTGTTGGCCGCGGCTTAGCGATGGCACGCGAGGAAC
AGGCGGCGGTGAGCGGTAGGTAAGCGCCGATTAAAGCGGTGGCAAGCAGC
AGCAGATCCTGGGCTCGCATGTCGACTGATAACT
BS03224.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:29:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32179-PA | 654 | Krn-RA | 1..654 | 670..17 | 3270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:34:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Krn-RA | 1354 | CG32179-RA | 384..1037 | 670..17 | 3270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:34:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17649879..17650532 | 17..670 | 3270 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 15:34:31 has no hits.
BS03224.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:21:49 Download gff for
BS03224.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Krn-PA | 1..654 | 17..670 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:35:11 Download gff for
BS03224.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32179-PA | 1..654 | 17..670 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:14:07 Download gff for
BS03224.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Krn-RA | 371..1039 | 12..684 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:56:10 Download gff for
BS03224.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Krn-RA | 371..1039 | 12..684 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 18:56:10 Download gff for
BS03224.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17649877..17650545 | 12..684 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:14:07 Download gff for
BS03224.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17642977..17643645 | 12..684 | 98 | | Plus |
BS03224.complete Sequence
686 bp (686 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634701
> BS03224.complete
GAAGTTATCAGTCGACATGCGAGCCCAGGATCTGCTGCTGCTTGCCACCG
CTTTAATCGGCGCTTACCTACCGCTCACCGCCGCCTGTTCCTCGCGTGCC
ATCGCTAAGCCGCGGCCAACAGCTGCACCGATCCTGCCGCCGGATAATGT
GGAAATATCCACAACGCCGAGACCGAATGTCACCTTCCCGATCTTCGCCT
GTCCACCGACCTATGTCGCCTGGTATTGCCTGAACGATGGCACCTGCTTT
ACGGTGAAGATCCACAATGAAATCCTATACAACTGCGAATGTGCGCTGGG
ATTTATGGGTCCGAGGTGCGAGTACAAGGAGATTGATGGCTCGTACCTGC
CAACCAGGAACCGTGTGATGCTAGAGAAGGCCAGCATTGTTAGCGGAGCA
ACGCTGGCCCTTCTGTTTATGGCCATGTGCTGTGTGGTTTTGTATCTGCG
ACACGAGAAGCTGCAAAAACAAAAGCTGCACGACAGCACCACAACCACAA
CGACCGACGGTGGCTGTCAGAACGAGGGCATGGACGAGGTGGATGGCTTG
CGACCCTTACGTCCAGTGAGACGTCCCTTTGGACCCTGCCGCATCCTATC
GCTGGAGGAGGCCCACCTTCAAGCGAAAGCCTCCAATCGCCCCAGGCATT
GCAACGAACTTTTGCGCTAAAAGCTTTCTAGACCAT
BS03224.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:30:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Krn-RA | 654 | CG32179-PA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:30:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Krn-RA | 1354 | CG32179-RA | 384..1037 | 17..670 | 3270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:30:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17649879..17650532 | 670..17 | 3270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:30:38 has no hits.
BS03224.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:29:28 Download gff for
BS03224.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Krn-RA | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:12:49 Download gff for
BS03224.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Krn-RA | 367..1035 | 3..675 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:53:06 Download gff for
BS03224.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Krn-RA | 384..1035 | 17..668 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:29:28 Download gff for
BS03224.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Krn-RA | 367..1035 | 3..675 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:06 Download gff for
BS03224.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Krn-RA | 384..1035 | 17..668 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:06 Download gff for
BS03224.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17649881..17650532 | 17..668 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:53:06 Download gff for
BS03224.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17642981..17643632 | 17..668 | 100 | | Minus |
BS03224.pep Sequence
Translation from 16 to 669
> BS03224.pep
MRAQDLLLLATALIGAYLPLTAACSSRAIAKPRPTAAPILPPDNVEISTT
PRPNVTFPIFACPPTYVAWYCLNDGTCFTVKIHNEILYNCECALGFMGPR
CEYKEIDGSYLPTRNRVMLEKASIVSGATLALLFMAMCCVVLYLRHEKLQ
KQKLHDSTTTTTTDGGCQNEGMDEVDGLRPLRPVRRPFGPCRILSLEEAH
LQAKASNRPRHCNELLR*
BS03224.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Krn-PA | 217 | CG32179-PA | 1..217 | 1..217 | 1162 | 100 | Plus |
| spi-PF | 234 | CG10334-PF | 11..176 | 8..156 | 404 | 50.6 | Plus |
| spi-PG | 234 | CG10334-PG | 11..176 | 8..156 | 404 | 50.6 | Plus |
| spi-PA | 234 | CG10334-PA | 11..176 | 8..156 | 404 | 50.6 | Plus |
| spi-PB | 234 | CG10334-PB | 11..176 | 8..156 | 404 | 50.6 | Plus |
