BS03236.3prime Sequence
787 bp (759 high quality bases) assembled on 2005-11-30
> BS03236.3prime
ATGGTCTAGAAAGCTTCTTCTTGATGTGCTCCTTGATCTTCTCCAGCAAG
TCGTCGGCTTCGTCACCGGTCTTTACGCGTAGCAACAGCGATGTGGCCTT
GGAGTCCTCTGGCGTGGGCACGCAGACCATCAGCACATTGTTCTTGCCCA
TGCGCTGGCAAGGTATACCCTTGCTAAGAATAAGGTTGACCAAGATGTTG
CCCAGATTGGTGTCGGCGCGGACTAACAGTTGGATCTTTTCGGAGTCCTT
GACAGGTTTCAAGTACAACGTGCCCACGCCACGATCGCCAAAGTCCTTGT
CTTTCTTAATGAACACCTTACACCGCTTGGAGTATATAGCGTCATCCTCC
ACAACCTGTTTAAACTCGACTTTTGGGGGCGTATCCTCTTCTTTTTCCTC
CTCCGCAGGCGCTGCCGCTGCAGCTGGCGGATGAATGTTTCCGAGAGAGA
AGGGCGTGGCACTGTTGGTGAAGGAAAAGCCCTTTGCGCCGTCTCCTGCT
CCTCCAGGCGCTTTTCCGAAACCCGCAAACAACGAGGTGCTTGGCTTGTC
GTCGTTGTTACTTTTCAGTCCGAAGGAAAAGCCATTGGTCTTCGGTGCCG
AGAAGTTAGGCTCATCCTTTTTAGTGGTCGTATCCTTTGCTCCAAAGCTA
AAAATGCTGGACTTAGGGGTATCATCGGATTTGGCTTCTCCAGTGGGTTT
TGCTGTCAAACTGAAGATACTGGAGGAGGACGGCACTGGCGCAGTGAACG
ATGCCGTACTGCCGAAGGAGACCAGTGGTGGTTGCGG
BS03236.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:29:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2158-PA | 1695 | CG2158-RA | 932..1692 | 780..20 | 3805 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:30:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup50-RA | 1907 | CG2158-RA | 1028..1798 | 787..16 | 3820 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:30:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8124125..8124551 | 780..354 | 2135 | 100 | Minus |
| 2R | 25286936 | 2R | 8124604..8124949 | 361..16 | 1715 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:30:12 has no hits.
BS03236.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:22:06 Download gff for
BS03236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2158-PA | 926..1695 | 17..787 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:35:33 Download gff for
BS03236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2158-PA | 926..1695 | 17..787 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:13:11 Download gff for
BS03236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup50-RA | 1028..1798 | 16..787 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:11:27 Download gff for
BS03236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup50-RA | 1028..1798 | 16..787 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:11:27 Download gff for
BS03236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8124610..8124949 | 16..355 | 99 | | Minus |
| 2R | 8124119..8124549 | 356..787 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:13:11 Download gff for
BS03236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4011624..4012054 | 356..787 | 99 | -> | Minus |
| arm_2R | 4012115..4012454 | 16..355 | 99 | | Minus |
BS03236.5prime Sequence
888 bp (727 high quality bases) assembled on 2005-11-30
> BS03236.5prime
GAAGTTATCAGTCGACATGGCTGGCAAGCGACAAGCCACTTCGAACCTGA
ACCACGAAAACTGGGACCTGGAGGAGGAACCCGAGGAGCGCGGCACATTC
CGCACGGCCACCGAAGAGGAGCTAAAGACACGCGTTATCAAGAAGGCGCG
CCGCAAGATTGCCGGTGGATCGTCCGCCGCTGAAGAGGATGGCGCCGAAG
AAAAGACTGCAGAGCCCAAAAGTGTGTTCAGTGGCTTTTCCGGTTTCGGC
AAGCCGGCTGCGAGCCCAGCCGCGGGTTCGCCTTTCTCCTTCCTGGCCAA
TGTGACGGCACCAGCCACGACCTCTAGCAGCGAGCCAAAAAAGTCTGCAT
TCTCGTTCGGGTTCAGCTCCAGTTCCAGTTCGGCCGATCGGCCTGTCAGC
ACTAGCATTTGCGGCACCGCCAGCACCAGCAGCACGGCCCCCTCTCCTTT
GCCGGCCAAGGAATCAACAAGTACCGTCGATGGCGCCAAGCCGACCACCT
CGATATTTGGCAACATATCAGCTGCCAAGAAGGAGAGTAGCGAGGCCAAA
ACCAGCAGCAGCAGCACTAGCCTCACATCCACCATGGAGACCTCCGAGTA
CCGTGAAAGCGTTGCTGACCTAAATCGGTCCGTCATAAAATTCCTGCAGG
ACCAAATGGGCAAAAGTCCCTACTGCATACTGACTCCAGTGTTTAAGAAC
TATGATGAGCATCTAAAGGATCTGCAAGACGAGGAGAGCGCCAGAACGAA
CTCCACGAAATCCAAAACGGCACAAGCTCGTTCTCAAGAACCAGTTGCAA
AGGTGTCCCGTGCATCGTCGCCACCAAAAGCGGCTACTACGTTTACGTTT
GGCAAGCCCAGCGCGCCAATAGGCGGCAGCGTATCGCC
BS03236.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:29:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2158-PA | 1695 | CG2158-RA | 1..872 | 17..888 | 4335 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:26:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup50-RA | 1907 | CG2158-RA | 103..974 | 17..888 | 4345 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:26:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8123419..8124065 | 242..888 | 3220 | 99.8 | Plus |
| 2R | 25286936 | 2R | 8123138..8123365 | 17..244 | 1140 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 02:26:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6805..6880 | 510..585 | 110 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2375 | 517..585 | 108 | 63.8 | Plus |
BS03236.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:22:07 Download gff for
BS03236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2158-PA | 1..872 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:35:35 Download gff for
BS03236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2158-PA | 1..872 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:41:23 Download gff for
BS03236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup50-RA | 103..974 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:08:21 Download gff for
BS03236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup50-RA | 103..974 | 17..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:08:21 Download gff for
BS03236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8123138..8123363 | 17..242 | 100 | -> | Plus |
| 2R | 8123420..8124065 | 243..888 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:41:23 Download gff for
BS03236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4010643..4010868 | 17..242 | 100 | -> | Plus |
| arm_2R | 4010925..4011570 | 243..888 | 99 | | Plus |
