Clone Sequence Records
BS03240.3prime Sequence
903 bp (847 high quality bases) assembled on 2005-11-30
> BS03240.3prime
ATGGTCTAGAAAGCTTTTAGGAGCCGAACTTAAACGACGTGGGCACGGCA
GTCTGCGGAAAGGCGAAGCCACCTTGCTTCTCGATCAGCTTCGATTCCTT
GGCGGCTTTGCGTTGGTCAGCCGTCACCACCACCTCTTGCAGCGCCTTGG
CTTGCTCAGGTGTGAGGTTGGAGGTCAACAGCGCATACCAGGCTTGGTCT
TGTGCAGAAAGTGCAGTAATAACTTCCTTAAACGTCCAGTACTCATCGAT
GGCGCTTTCGTTCTCCTCATCGTCGATGGGCGTGGTAAACGACTCCAGTC
CAGTCTCGTTCAGATCACCCACAGACTCCTCGGCGTCACCGTCCGAGTCA
GCATCGTCGTCCTTGATTTCGGCTTTCACTTCGAAGCCCGACTCATTGCC
CTTGGTTTTGGCAAATTCGGCCAATTTATCCAGATAGTCCGGTGCCATTT
CGTCCATGTCATCCTCGTCACTGGACAGAGCCTCCTCACAGTCGTCACCG
TCCTCCTCCTCCTCATCTTCCTCTTCCTCCTGAGCACGAGACTCGTAGGC
GCGTTTTAGACCATCGAAAAGCAAAATAAGTGCGGGCACAATCTTTCCAG
CCACTTCGCTCAGAACCTGGGGCTTGGCTTCGCCCAGCGAGATGAGGGTG
CACAGACCCAGGACGCAAAGTTTGCGATCGTGGATGCCTAGGAAACAGTC
CGTGTCGTGAAGCCACTGCTTGATAAAGTGCGCGCTGATAGAGTCGTTGT
TTTGCTGGGACATTTTGTCCAGAATGGACAGCAGCAACTGGGGATTATAG
TAGAGTGCCGCGATTACCACTTGCAGGCACATAGTGCGCAGCTCTGAGGA
TTGAACTTCACGTGTTAACGGGGACAGAGCCAGCTCCACGAACATATGTA
TCA
BS03240.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:29:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7935-PA | 3150 | msk-RA | 2264..3150 | 903..17 | 4410 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:13:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
msk-RA | 3979 | CG7935-RA | 2525..3411 | 903..17 | 4420 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:13:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8120277..8120750 | 687..214 | 2370 | 100 | Minus |
3L | 28110227 | 3L | 8120006..8120222 | 903..687 | 1070 | 99.5 | Minus |
3L | 28110227 | 3L | 8120814..8121011 | 214..17 | 990 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:13:51 has no hits.
BS03240.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:22:10 Download gff for
BS03240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msk-PA | 2265..3150 | 17..902 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:35:39 Download gff for
BS03240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7935-PA | 2265..3150 | 17..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:12:21 Download gff for
BS03240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msk-RA | 2526..3417 | 12..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:43:25 Download gff for
BS03240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msk-RA | 2526..3417 | 12..902 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:43:25 Download gff for
BS03240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8120007..8120222 | 687..902 | 99 | -> | Minus |
3L | 8120278..8120750 | 214..686 | 100 | -> | Minus |
3L | 8120815..8121017 | 12..213 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:12:21 Download gff for
BS03240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8113107..8113322 | 687..902 | 99 | -> | Minus |
arm_3L | 8113378..8113850 | 214..686 | 100 | -> | Minus |
arm_3L | 8113915..8114117 | 12..213 | 99 | | Minus |
BS03240.5prime Sequence
791 bp (640 high quality bases) assembled on 2005-11-30
> BS03240.5prime
GAAGTTATCAGTCGACATGGTGGCTGTCATCCAGGACGTGATCTTTCCCA
TCATGTCGTTTACTGACTCCGATCAGGAGCTCTGGGAAAGCGATCCCTAC
GAGTACATTCGCCTTAAGTTCGATATCTTTGAGGATTATGCCACACCTGT
ACCGGCAGCCCAATCTCTGCTGCATTCTATGTGCAAAAAGCGCAAGGGCA
TTTTGCCCAAGGCAATGGCCACAATTATGCAGATAATTACATCGCCGAAT
GCGGACAACAAACAGAAAGATGGTGCCTTGCACATGATTGGAACGCTGGC
GGACGTACTGCTGAAGAAGGCTTCGTACCGCGACCAAGTGGAGTCCATGC
TGACCACCTACGTCTTCCCAGAATTCCAAAATCCCGCGGGCCACATGAGA
GCGCGCGCGTGCTGGGTGCTGCACTATTTCTGTGACGTTCAAATCAAGAA
TCCCCAAGTGCTGGCCGAGATAATGCGTCTGACCACAAACGCCTTGCTTA
CCGACAAGGAGCTGCCCGTCAAAGTGGAGGCAGCTATCGGTCTGCAGATG
TTCATATCGTCCCAGGACGAGGCGCCGCAATACGTGGAGGCACAGATCAA
GGAGATCACCAAGGAGCTGCTTACCATCATTCGAGAGACGGAGAACGAAG
ATCTAACAAACGTTATGCAAAAGATCGTGTGCACCTTCACCGAGCAATTG
CTGCCCCGTGGCCACCCGAGATCTGCCCAGCACCTGGCCACCACCTTTCA
GCCAGGGTCTAGAATCTGAGGAGGGGATCCGACGAAGAAGG
BS03240.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:29:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7935-PA | 3150 | msk-RA | 1040..1731 | 15..706 | 3460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:38:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
msk-RA | 3979 | CG7935-RA | 1301..2071 | 15..791 | 3705 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:38:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8118744..8119393 | 122..775 | 3040 | 99.1 | Plus |
3L | 28110227 | 3L | 8118585..8118692 | 15..122 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 11:38:41 has no hits.
BS03240.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:22:11 Download gff for
BS03240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msk-PA | 1038..1810 | 12..791 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:35:40 Download gff for
BS03240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7935-PA | 1038..1810 | 12..791 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:52:14 Download gff for
BS03240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msk-RA | 1299..2071 | 12..791 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:34:59 Download gff for
BS03240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msk-RA | 1299..2071 | 12..791 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:34:59 Download gff for
BS03240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8118583..8118692 | 12..122 | 99 | -> | Plus |
3L | 8118745..8119407 | 123..791 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:52:14 Download gff for
BS03240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8111683..8111792 | 12..122 | 99 | -> | Plus |
arm_3L | 8111845..8112507 | 123..791 | 98 | | Plus |
BS03240.complete Sequence
2141 bp assembled on 2008-08-14
> BS03240.complete
GAAGTTATCAGTCGACATGGTGGCTGTCATCCAGGACGTGATCTTTCCCA
TCATGTCGTTTACTGACTCCGATCAGGAGCTCTGGGAAAGCGATCCCTAC
GAGTACATTCGCCTTAAGTTCGATATCTTTGAGGATTATGCCACACCTGT
ACCGGCAGCCCAATCTCTGCTGCATTCTATGTGCAAAAAGCGCAAGGGCA
TTTTGCCCAAGGCAATGGCCACAATTATGCAGATAATTACATCGCCGAAT
GCGGACAACAAACAGAAAGATGGTGCCTTGCACATGATTGGAACGCTGGC
GGACGTACTGCTGAAGAAGGCTTCGTACCGCGACCAAGTGGAGTCCATGC
TGACCACCTACGTCTTCCCAGAATTCCAAAATCCCGCGGGCCACATGAGA
GCGCGCGCGTGCTGGGTGCTGCACTATTTCTGTGACGTTCAAATCAAGAA
TCCCCAAGTGCTGGCCGAGATAATGCGTCTGACCACAAACGCCTTGCTTA
CCGACAAGGAGCTGCCCGTCAAAGTGGAGGCAGCTATCGGTCTGCAGATG
TTCATATCGTCCCAGGACGAGGCGCCGCAATACGTGGAGGCACAGATCAA
GGAGATCACCAAGGAGCTGCTTACCATCATTCGAGAGACGGAGAACGAAG
ATCTAACAAACGTTATGCAAAAGATCGTGTGCACCTTCACCGAGCAATTG
CTGCCCGTGGCCACCGAGATCTGCCAGCACCTGGCCACCACCTTCAGCCA
GGTCCTAGAATCTGAGGAGGGATCCGACGAGAAGGCCATCACGGCCATGA
GTCTGCTTAACACTATCGAAACTCTGCTCAGTGTGATGGAAGAGCATCCT
GATGTCCTGCTTAACTTGCACCCGATCGTCATTAATGTTGTCGGACACAT
TTTCCAGCACAACATAACTGACTTCTATGAGGAAACCTTCTCCCTGGTCT
ACGACCTGACAGCCAAGGCCATTTCCCCCGAAATGTGGCAGATGCTGGAG
CTCATCTATCAGGTGTTCAAGAAGGACGGTATTGACTACTTTATCGACAT
TATGCCTGCTCTGCATAACTATGTGACGGTCGACACGCCCGCTTTCCTCT
CCAATCCCAACAGGCTGTTGGCGATTCTCGACATGTGCAAAACGATGCTT
ACTAGTAGCCCTGGCGAGGATCCCGAGTGCCATGCCGCCAAACTGATGGA
AGTGATTATCTTGCAGTGCAAGGGTCAAATCGACTCAGTGATACATATGT
TCGTGGAGCTGGCTCTGTCCCGGTTAACACGTGAAGTTCAATCCTCAGAG
CTGCGCACTATGTGCCTGCAAGTGGTAATCGCGGCACTCTACTATAATCC
CCAGTTGCTGCTGTCCATTCTGGACAAAATGTCCCAGCAAAACAACGACT
CTATCAGCGCGCACTTTATCAAGCAGTGGCTTCACGACACGGACTGTTTC
CTAGGCATCCACGATCGCAAACTTTGCGTCCTGGGTCTGTGCACCCTCAT
CTCGCTGGGCGAAGCCAAGCCCCAGGTTCTGAGCGAAGTGGCTGGAAAGA
TTGTGCCCGCACTTATTTTGCTTTTCGATGGTCTAAAACGCGCCTACGAG
TCTCGTGCTCAGGAGGAAGAGGAAGATGAGGAGGAGGAGGACGGTGACGA
CTGTGAGGAGGCTCTGTCCAGTGACGAGGATGACATGGACGAAATGGCAC
CGGACTATCTGGATAAATTGGCCGAATTTGCCAAAACCAAGGGCAATGAG
TCGGGCTTCGAAGTGAAAGCCGAAATCAAGGACGACGATGCTGACTCGGA
CGGTGACGCCGAGGAGTCTGTGGGTGATCTGAACGAGACTGGACTGGAGT
CGTTTACCACGCCCATCGACGATGAGGAGAACGAAAGCGCCATCGATGAG
TACTGGACGTTTAAGGAAGTTATTACTGCACTTTCTGCACAAGACCAAGC
CTGGTATGCGCTGTTGACCTCCAACCTCACACCTGAGCAAGCCAAGGCGC
TGCAAGAGGTGGTGGTGACGGCTGACCAACGCAAAGCCGCCAAGGAATCG
AAGCTGATCGAGAAGCAAGGTGGCTTCGCCTTTCCGCAGACTGCCGTGCC
CACGTCGTTTAAGTTCGGCTCCTAAAAGCTTTCTAGACCAT
BS03240.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:52:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
msk-RA | 3150 | CG7935-PA | 1040..3150 | 15..2125 | 10555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:52:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
msk-RA | 3979 | CG7935-RA | 1301..3411 | 15..2125 | 10555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:52:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8118744..8119542 | 122..920 | 3995 | 100 | Plus |
3L | 28110227 | 3L | 8120277..8120750 | 1455..1928 | 2370 | 100 | Plus |
3L | 28110227 | 3L | 8119911..8120222 | 1144..1455 | 1560 | 100 | Plus |
3L | 28110227 | 3L | 8119604..8119828 | 920..1144 | 1125 | 100 | Plus |
3L | 28110227 | 3L | 8120814..8121011 | 1928..2125 | 990 | 100 | Plus |
3L | 28110227 | 3L | 8118585..8118692 | 15..122 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:52:45 has no hits.
BS03240.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:48:23 Download gff for
BS03240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msk-RA | 1300..3418 | 12..2130 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:25 Download gff for
BS03240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msk-RA | 1303..3409 | 17..2123 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:26 Download gff for
BS03240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msk-RA | 1304..3410 | 17..2123 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:57 Download gff for
BS03240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msk-RA | 1303..3409 | 17..2123 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:57 Download gff for
BS03240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8119912..8120222 | 1145..1455 | 100 | -> | Plus |
3L | 8119605..8119828 | 921..1144 | 100 | -> | Plus |
3L | 8118587..8118692 | 17..122 | 100 | -> | Plus |
3L | 8118745..8119542 | 123..920 | 100 | -> | Plus |
3L | 8120278..8120750 | 1456..1928 | 100 | -> | Plus |
3L | 8120815..8121009 | 1929..2123 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:25 Download gff for
BS03240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8112705..8112928 | 921..1144 | 100 | -> | Plus |
arm_3L | 8111687..8111792 | 17..122 | 100 | -> | Plus |
arm_3L | 8111845..8112642 | 123..920 | 100 | -> | Plus |
arm_3L | 8113012..8113322 | 1145..1455 | 100 | -> | Plus |
arm_3L | 8113378..8113850 | 1456..1928 | 100 | -> | Plus |
arm_3L | 8113915..8114109 | 1929..2123 | 100 | | Plus |
BS03240.pep Sequence
Translation from 16 to 2124
> BS03240.pep
MVAVIQDVIFPIMSFTDSDQELWESDPYEYIRLKFDIFEDYATPVPAAQS
LLHSMCKKRKGILPKAMATIMQIITSPNADNKQKDGALHMIGTLADVLLK
KASYRDQVESMLTTYVFPEFQNPAGHMRARACWVLHYFCDVQIKNPQVLA
EIMRLTTNALLTDKELPVKVEAAIGLQMFISSQDEAPQYVEAQIKEITKE
LLTIIRETENEDLTNVMQKIVCTFTEQLLPVATEICQHLATTFSQVLESE
EGSDEKAITAMSLLNTIETLLSVMEEHPDVLLNLHPIVINVVGHIFQHNI
TDFYEETFSLVYDLTAKAISPEMWQMLELIYQVFKKDGIDYFIDIMPALH
NYVTVDTPAFLSNPNRLLAILDMCKTMLTSSPGEDPECHAAKLMEVIILQ
CKGQIDSVIHMFVELALSRLTREVQSSELRTMCLQVVIAALYYNPQLLLS
ILDKMSQQNNDSISAHFIKQWLHDTDCFLGIHDRKLCVLGLCTLISLGEA
KPQVLSEVAGKIVPALILLFDGLKRAYESRAQEEEEDEEEEDGDDCEEAL
SSDEDDMDEMAPDYLDKLAEFAKTKGNESGFEVKAEIKDDDADSDGDAEE
SVGDLNETGLESFTTPIDDEENESAIDEYWTFKEVITALSAQDQAWYALL
TSNLTPEQAKALQEVVVTADQRKAAKESKLIEKQGGFAFPQTAVPTSFKF
GS*
BS03240.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:47:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
msk-PA | 1049 | CG7935-PA | 348..1049 | 1..702 | 3592 | 100 | Plus |