Clone BS03240 Report

Search the DGRC for BS03240

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:32
Well:40
Vector:pDNR-Dual
Associated Gene/Transcriptobsolete transcript model
Protein status:BS03240.pep: Imported from assembly
Sequenced Size:2141

Clone Sequence Records

BS03240.3prime Sequence

903 bp (847 high quality bases) assembled on 2005-11-30

> BS03240.3prime
ATGGTCTAGAAAGCTTTTAGGAGCCGAACTTAAACGACGTGGGCACGGCA
GTCTGCGGAAAGGCGAAGCCACCTTGCTTCTCGATCAGCTTCGATTCCTT
GGCGGCTTTGCGTTGGTCAGCCGTCACCACCACCTCTTGCAGCGCCTTGG
CTTGCTCAGGTGTGAGGTTGGAGGTCAACAGCGCATACCAGGCTTGGTCT
TGTGCAGAAAGTGCAGTAATAACTTCCTTAAACGTCCAGTACTCATCGAT
GGCGCTTTCGTTCTCCTCATCGTCGATGGGCGTGGTAAACGACTCCAGTC
CAGTCTCGTTCAGATCACCCACAGACTCCTCGGCGTCACCGTCCGAGTCA
GCATCGTCGTCCTTGATTTCGGCTTTCACTTCGAAGCCCGACTCATTGCC
CTTGGTTTTGGCAAATTCGGCCAATTTATCCAGATAGTCCGGTGCCATTT
CGTCCATGTCATCCTCGTCACTGGACAGAGCCTCCTCACAGTCGTCACCG
TCCTCCTCCTCCTCATCTTCCTCTTCCTCCTGAGCACGAGACTCGTAGGC
GCGTTTTAGACCATCGAAAAGCAAAATAAGTGCGGGCACAATCTTTCCAG
CCACTTCGCTCAGAACCTGGGGCTTGGCTTCGCCCAGCGAGATGAGGGTG
CACAGACCCAGGACGCAAAGTTTGCGATCGTGGATGCCTAGGAAACAGTC
CGTGTCGTGAAGCCACTGCTTGATAAAGTGCGCGCTGATAGAGTCGTTGT
TTTGCTGGGACATTTTGTCCAGAATGGACAGCAGCAACTGGGGATTATAG
TAGAGTGCCGCGATTACCACTTGCAGGCACATAGTGCGCAGCTCTGAGGA
TTGAACTTCACGTGTTAACGGGGACAGAGCCAGCTCCACGAACATATGTA
TCA

BS03240.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7935-PA 3150 msk-RA 2264..3150 903..17 4410 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:13:53
Subject Length Description Subject Range Query Range Score Percent Strand
msk-RA 3979 CG7935-RA 2525..3411 903..17 4420 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:13:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8120277..8120750 687..214 2370 100 Minus
3L 28110227 3L 8120006..8120222 903..687 1070 99.5 Minus
3L 28110227 3L 8120814..8121011 214..17 990 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:13:51 has no hits.

BS03240.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:22:10 Download gff for BS03240.3prime
Subject Subject Range Query Range Percent Splice Strand
msk-PA 2265..3150 17..902 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:35:39 Download gff for BS03240.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7935-PA 2265..3150 17..902 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:12:21 Download gff for BS03240.3prime
Subject Subject Range Query Range Percent Splice Strand
msk-RA 2526..3417 12..902 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:43:25 Download gff for BS03240.3prime
Subject Subject Range Query Range Percent Splice Strand
msk-RA 2526..3417 12..902 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:43:25 Download gff for BS03240.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8120007..8120222 687..902 99 -> Minus
3L 8120278..8120750 214..686 100 -> Minus
3L 8120815..8121017 12..213 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:12:21 Download gff for BS03240.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8113107..8113322 687..902 99 -> Minus
arm_3L 8113378..8113850 214..686 100 -> Minus
arm_3L 8113915..8114117 12..213 99   Minus

BS03240.5prime Sequence

791 bp (640 high quality bases) assembled on 2005-11-30

> BS03240.5prime
GAAGTTATCAGTCGACATGGTGGCTGTCATCCAGGACGTGATCTTTCCCA
TCATGTCGTTTACTGACTCCGATCAGGAGCTCTGGGAAAGCGATCCCTAC
GAGTACATTCGCCTTAAGTTCGATATCTTTGAGGATTATGCCACACCTGT
ACCGGCAGCCCAATCTCTGCTGCATTCTATGTGCAAAAAGCGCAAGGGCA
TTTTGCCCAAGGCAATGGCCACAATTATGCAGATAATTACATCGCCGAAT
GCGGACAACAAACAGAAAGATGGTGCCTTGCACATGATTGGAACGCTGGC
GGACGTACTGCTGAAGAAGGCTTCGTACCGCGACCAAGTGGAGTCCATGC
TGACCACCTACGTCTTCCCAGAATTCCAAAATCCCGCGGGCCACATGAGA
GCGCGCGCGTGCTGGGTGCTGCACTATTTCTGTGACGTTCAAATCAAGAA
TCCCCAAGTGCTGGCCGAGATAATGCGTCTGACCACAAACGCCTTGCTTA
CCGACAAGGAGCTGCCCGTCAAAGTGGAGGCAGCTATCGGTCTGCAGATG
TTCATATCGTCCCAGGACGAGGCGCCGCAATACGTGGAGGCACAGATCAA
GGAGATCACCAAGGAGCTGCTTACCATCATTCGAGAGACGGAGAACGAAG
ATCTAACAAACGTTATGCAAAAGATCGTGTGCACCTTCACCGAGCAATTG
CTGCCCCGTGGCCACCCGAGATCTGCCCAGCACCTGGCCACCACCTTTCA
GCCAGGGTCTAGAATCTGAGGAGGGGATCCGACGAAGAAGG

BS03240.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7935-PA 3150 msk-RA 1040..1731 15..706 3460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:38:44
Subject Length Description Subject Range Query Range Score Percent Strand
msk-RA 3979 CG7935-RA 1301..2071 15..791 3705 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8118744..8119393 122..775 3040 99.1 Plus
3L 28110227 3L 8118585..8118692 15..122 540 100 Plus
Blast to na_te.dros performed on 2015-02-02 11:38:41 has no hits.

BS03240.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:22:11 Download gff for BS03240.5prime
Subject Subject Range Query Range Percent Splice Strand
msk-PA 1038..1810 12..791 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:35:40 Download gff for BS03240.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7935-PA 1038..1810 12..791 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:52:14 Download gff for BS03240.5prime
Subject Subject Range Query Range Percent Splice Strand
msk-RA 1299..2071 12..791 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:34:59 Download gff for BS03240.5prime
Subject Subject Range Query Range Percent Splice Strand
msk-RA 1299..2071 12..791 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:34:59 Download gff for BS03240.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8118583..8118692 12..122 99 -> Plus
3L 8118745..8119407 123..791 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:52:14 Download gff for BS03240.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8111683..8111792 12..122 99 -> Plus
arm_3L 8111845..8112507 123..791 98   Plus

BS03240.complete Sequence

2141 bp assembled on 2008-08-14

> BS03240.complete
GAAGTTATCAGTCGACATGGTGGCTGTCATCCAGGACGTGATCTTTCCCA
TCATGTCGTTTACTGACTCCGATCAGGAGCTCTGGGAAAGCGATCCCTAC
GAGTACATTCGCCTTAAGTTCGATATCTTTGAGGATTATGCCACACCTGT
ACCGGCAGCCCAATCTCTGCTGCATTCTATGTGCAAAAAGCGCAAGGGCA
TTTTGCCCAAGGCAATGGCCACAATTATGCAGATAATTACATCGCCGAAT
GCGGACAACAAACAGAAAGATGGTGCCTTGCACATGATTGGAACGCTGGC
GGACGTACTGCTGAAGAAGGCTTCGTACCGCGACCAAGTGGAGTCCATGC
TGACCACCTACGTCTTCCCAGAATTCCAAAATCCCGCGGGCCACATGAGA
GCGCGCGCGTGCTGGGTGCTGCACTATTTCTGTGACGTTCAAATCAAGAA
TCCCCAAGTGCTGGCCGAGATAATGCGTCTGACCACAAACGCCTTGCTTA
CCGACAAGGAGCTGCCCGTCAAAGTGGAGGCAGCTATCGGTCTGCAGATG
TTCATATCGTCCCAGGACGAGGCGCCGCAATACGTGGAGGCACAGATCAA
GGAGATCACCAAGGAGCTGCTTACCATCATTCGAGAGACGGAGAACGAAG
ATCTAACAAACGTTATGCAAAAGATCGTGTGCACCTTCACCGAGCAATTG
CTGCCCGTGGCCACCGAGATCTGCCAGCACCTGGCCACCACCTTCAGCCA
GGTCCTAGAATCTGAGGAGGGATCCGACGAGAAGGCCATCACGGCCATGA
GTCTGCTTAACACTATCGAAACTCTGCTCAGTGTGATGGAAGAGCATCCT
GATGTCCTGCTTAACTTGCACCCGATCGTCATTAATGTTGTCGGACACAT
TTTCCAGCACAACATAACTGACTTCTATGAGGAAACCTTCTCCCTGGTCT
ACGACCTGACAGCCAAGGCCATTTCCCCCGAAATGTGGCAGATGCTGGAG
CTCATCTATCAGGTGTTCAAGAAGGACGGTATTGACTACTTTATCGACAT
TATGCCTGCTCTGCATAACTATGTGACGGTCGACACGCCCGCTTTCCTCT
CCAATCCCAACAGGCTGTTGGCGATTCTCGACATGTGCAAAACGATGCTT
ACTAGTAGCCCTGGCGAGGATCCCGAGTGCCATGCCGCCAAACTGATGGA
AGTGATTATCTTGCAGTGCAAGGGTCAAATCGACTCAGTGATACATATGT
TCGTGGAGCTGGCTCTGTCCCGGTTAACACGTGAAGTTCAATCCTCAGAG
CTGCGCACTATGTGCCTGCAAGTGGTAATCGCGGCACTCTACTATAATCC
CCAGTTGCTGCTGTCCATTCTGGACAAAATGTCCCAGCAAAACAACGACT
CTATCAGCGCGCACTTTATCAAGCAGTGGCTTCACGACACGGACTGTTTC
CTAGGCATCCACGATCGCAAACTTTGCGTCCTGGGTCTGTGCACCCTCAT
CTCGCTGGGCGAAGCCAAGCCCCAGGTTCTGAGCGAAGTGGCTGGAAAGA
TTGTGCCCGCACTTATTTTGCTTTTCGATGGTCTAAAACGCGCCTACGAG
TCTCGTGCTCAGGAGGAAGAGGAAGATGAGGAGGAGGAGGACGGTGACGA
CTGTGAGGAGGCTCTGTCCAGTGACGAGGATGACATGGACGAAATGGCAC
CGGACTATCTGGATAAATTGGCCGAATTTGCCAAAACCAAGGGCAATGAG
TCGGGCTTCGAAGTGAAAGCCGAAATCAAGGACGACGATGCTGACTCGGA
CGGTGACGCCGAGGAGTCTGTGGGTGATCTGAACGAGACTGGACTGGAGT
CGTTTACCACGCCCATCGACGATGAGGAGAACGAAAGCGCCATCGATGAG
TACTGGACGTTTAAGGAAGTTATTACTGCACTTTCTGCACAAGACCAAGC
CTGGTATGCGCTGTTGACCTCCAACCTCACACCTGAGCAAGCCAAGGCGC
TGCAAGAGGTGGTGGTGACGGCTGACCAACGCAAAGCCGCCAAGGAATCG
AAGCTGATCGAGAAGCAAGGTGGCTTCGCCTTTCCGCAGACTGCCGTGCC
CACGTCGTTTAAGTTCGGCTCCTAAAAGCTTTCTAGACCAT

BS03240.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:52:46
Subject Length Description Subject Range Query Range Score Percent Strand
msk-RA 3150 CG7935-PA 1040..3150 15..2125 10555 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:52:47
Subject Length Description Subject Range Query Range Score Percent Strand
msk-RA 3979 CG7935-RA 1301..3411 15..2125 10555 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:52:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8118744..8119542 122..920 3995 100 Plus
3L 28110227 3L 8120277..8120750 1455..1928 2370 100 Plus
3L 28110227 3L 8119911..8120222 1144..1455 1560 100 Plus
3L 28110227 3L 8119604..8119828 920..1144 1125 100 Plus
3L 28110227 3L 8120814..8121011 1928..2125 990 100 Plus
3L 28110227 3L 8118585..8118692 15..122 540 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:52:45 has no hits.

BS03240.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:48:23 Download gff for BS03240.complete
Subject Subject Range Query Range Percent Splice Strand
msk-RA 1300..3418 12..2130 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:25 Download gff for BS03240.complete
Subject Subject Range Query Range Percent Splice Strand
msk-RA 1303..3409 17..2123 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:26 Download gff for BS03240.complete
Subject Subject Range Query Range Percent Splice Strand
msk-RA 1304..3410 17..2123 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:57 Download gff for BS03240.complete
Subject Subject Range Query Range Percent Splice Strand
msk-RA 1303..3409 17..2123 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:57 Download gff for BS03240.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8119912..8120222 1145..1455 100 -> Plus
3L 8119605..8119828 921..1144 100 -> Plus
3L 8118587..8118692 17..122 100 -> Plus
3L 8118745..8119542 123..920 100 -> Plus
3L 8120278..8120750 1456..1928 100 -> Plus
3L 8120815..8121009 1929..2123 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:25 Download gff for BS03240.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8112705..8112928 921..1144 100 -> Plus
arm_3L 8111687..8111792 17..122 100 -> Plus
arm_3L 8111845..8112642 123..920 100 -> Plus
arm_3L 8113012..8113322 1145..1455 100 -> Plus
arm_3L 8113378..8113850 1456..1928 100 -> Plus
arm_3L 8113915..8114109 1929..2123 100   Plus

BS03240.pep Sequence

Translation from 16 to 2124

> BS03240.pep
MVAVIQDVIFPIMSFTDSDQELWESDPYEYIRLKFDIFEDYATPVPAAQS
LLHSMCKKRKGILPKAMATIMQIITSPNADNKQKDGALHMIGTLADVLLK
KASYRDQVESMLTTYVFPEFQNPAGHMRARACWVLHYFCDVQIKNPQVLA
EIMRLTTNALLTDKELPVKVEAAIGLQMFISSQDEAPQYVEAQIKEITKE
LLTIIRETENEDLTNVMQKIVCTFTEQLLPVATEICQHLATTFSQVLESE
EGSDEKAITAMSLLNTIETLLSVMEEHPDVLLNLHPIVINVVGHIFQHNI
TDFYEETFSLVYDLTAKAISPEMWQMLELIYQVFKKDGIDYFIDIMPALH
NYVTVDTPAFLSNPNRLLAILDMCKTMLTSSPGEDPECHAAKLMEVIILQ
CKGQIDSVIHMFVELALSRLTREVQSSELRTMCLQVVIAALYYNPQLLLS
ILDKMSQQNNDSISAHFIKQWLHDTDCFLGIHDRKLCVLGLCTLISLGEA
KPQVLSEVAGKIVPALILLFDGLKRAYESRAQEEEEDEEEEDGDDCEEAL
SSDEDDMDEMAPDYLDKLAEFAKTKGNESGFEVKAEIKDDDADSDGDAEE
SVGDLNETGLESFTTPIDDEENESAIDEYWTFKEVITALSAQDQAWYALL
TSNLTPEQAKALQEVVVTADQRKAAKESKLIEKQGGFAFPQTAVPTSFKF
GS*

BS03240.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
msk-PA 1049 CG7935-PA 348..1049 1..702 3592 100 Plus