Clone BS03245 Report

Search the DGRC for BS03245

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:32
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptalphaCOP-RA
Protein status:BS03245.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03245.3prime Sequence

857 bp (753 high quality bases) assembled on 2005-11-30

> BS03245.3prime
ATGGTCTAGAAAGCTTCTAGCGGAATTGCAGGTTTGAAATGCGCAGGCCA
ATGCTATCCTTGCCGATCTGGCTCACTTCGCAAACTGTGCAGAGATTGCC
CTTGAACTGAGGGTCGAAAGAGGAGGAGCAGAAGGGACAGGTCACTTCGG
GTTTACCCCTATACAGTGGCTTCCAGCTGATGCCGCAGATTGTGAACGGA
TTAAACTCCTCGTACTGCAGCTGATGCTCGTCCACGGGATTTACCTCGCA
GGCCTGCAGGATCTTGCGCACCTGCTGGGCAACGTCCGGTCGTGGCGCCA
GTTCCAGGAGACGACGGGCAAATGAGGCGGCCGTCTTGTAGTTCTTCAGC
TTGAAGAACATATTGAGGGCGGTACGCAGGGTGAGGATTTGGTGCACGGG
CTGAAGCTTGCAGTGCGTGAAGTAGGCGGCCATCTCGCACAGACGCTTTT
GCTCCTCAAGCGTCGACTTGGGCATGCCCTTGCGCACAGTCTCCATCTTC
AGGCCAACGATATACTCAGCGCAGATCCTTAAGAGTTGCTGGGCCTCCGC
CGCATCTAGCTTCGTGTCCACTACCAGCAGTGGGATGCTAATCAAGATGG
AATGGAACTTCTCTACTGCCTCGGAGAACTTTCCAGAAGTTGTCAGTTGG
TACCCAGCTTGCAGGCGTGCCACCAAATCATTCAGTTTAATGCCAACCGC
AGGACGCTGCAGCTTGATGTTTGTCTCGGAGTAGTTGCGAAGTGGGTAAC
CACTTAGGGATTGCAGATTCGGATTGGCCGTGTAGCTCGTTCGAGAGCAG
GCGTAGTTCTGCAGGAAGAGTGTCTTGAATGGCTGGAAATTGACACTCCC
AGCTGAT

BS03245.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:29:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7961-PB 3705 alphaCop-RB 2878..3705 844..17 4140 100 Minus
CG7961-PA 3705 alphaCop-RA 2878..3705 844..17 4140 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:39:23
Subject Length Description Subject Range Query Range Score Percent Strand
alphaCOP-RA 4078 CG7961-RA 3106..3947 857..17 4185 99.9 Minus
alphaCOP-RB 3970 CG7961-RB 2998..3839 857..17 4185 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:39:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1641197..1642038 17..857 4160 99.9 Plus
Blast to na_te.dros performed on 2015-02-11 18:39:20 has no hits.

BS03245.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:22:18 Download gff for BS03245.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7961-PA 2864..3705 17..857 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:35:48 Download gff for BS03245.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7961-PA 2864..3705 17..857 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:49:19 Download gff for BS03245.3prime
Subject Subject Range Query Range Percent Splice Strand
alphaCop-RB 2998..3839 17..857 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:21:58 Download gff for BS03245.3prime
Subject Subject Range Query Range Percent Splice Strand
alphaCOP-RB 2998..3839 17..857 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:21:58 Download gff for BS03245.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1641197..1642038 17..857 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:49:19 Download gff for BS03245.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1641197..1642038 17..857 99   Plus

BS03245.5prime Sequence

803 bp (740 high quality bases) assembled on 2005-11-30

> BS03245.5prime
GAAGTTATCAGTCGACATGCTGACCAACTTCGAGTCGAAGTCGGCGAGGG
TGAAGGGCCTCTCCTTCCACCCTAAGCGCCCCTGGATCCTGGTCAGCTTG
CACAGCGGCGTCATCCAGCTGTGGGACTACCGGATGCACACGCTCCTCGA
GAAGTTCGACGAGCACGACGGACCGGTGCGAGGCGTGGCCTTCCACCAGC
AGATGCCGCTCTTCGTCTCTGGCGGCGACGACTACAAGATCAAGGTGTGG
AACTACAAGCAACGCCGATGCATTTTTACCCTCCTGGCCCATTTGGACTA
TGTGCGCACGGTGGCTTTCCACCACGAATACCCATGGATTCTGAGCGCCT
CCGACGATCAGACCATACGCATCTGGAACTGGCAGTCGCGCAACTGCATC
TGCGTGCTGACGGGCCACAACCACTATGTGATGTGCGCCCAGTTCCATCC
CACGGAGGATCAGATCGTTTCTGCTTCACTCGATCAGACGGTGCGCGTGT
GGGACATTTCGGGGCTGCGTAAGAAGAACGTGGCTCCCGGGCCCGGTGGG
CTTGATGACCACCTAAAGGGTCATCCGGGTGCCACTGATCTGTTTGGCCA
AGCAGATGCCGTGGTCAAGCACGTGCTCGAGGGCCACGACCGTGGCGTCA
ACTGGGCCAGTTTCCATCCCACCCTGCCGCTGATTGTCTCCGGTGCCGAT
GATCGCCTTGTGAAGTTGTGGCGCATGAACGAGTACAAGGCTTGGGAGGT
CGACACCTGTCGCGGTCACTACAACAACGTGTCCAGCGTGTTGTTCCATC
CCC

BS03245.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG7961-PB 3705 alphaCop-RB 1..786 17..802 3930 100 Plus
CG7961-PA 3705 alphaCop-RA 1..786 17..802 3930 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:33:00
Subject Length Description Subject Range Query Range Score Percent Strand
alphaCOP-RA 4078 CG7961-RA 242..1028 16..802 3935 100 Plus
alphaCOP-RB 3970 CG7961-RB 134..920 16..802 3935 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1644172..1644958 802..16 3935 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:32:57 has no hits.

BS03245.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:22:19 Download gff for BS03245.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7961-PA 1..786 17..803 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:35:50 Download gff for BS03245.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7961-PA 1..786 17..803 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:33:55 Download gff for BS03245.5prime
Subject Subject Range Query Range Percent Splice Strand
alphaCop-RB 126..920 10..803 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:40:50 Download gff for BS03245.5prime
Subject Subject Range Query Range Percent Splice Strand
alphaCOP-RB 126..920 10..803 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:40:50 Download gff for BS03245.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1644171..1644966 10..803 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:33:55 Download gff for BS03245.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1644171..1644966 10..803 99   Minus

BS03245.complete Sequence

3737 bp assembled on 2008-01-02

GenBank Submission: FJ634702

> BS03245.complete
GAAGTTATCAGTCGACATGCTGACCAACTTCGAGTCGAAGTCGGCGAGGG
TGAAGGGCCTCTCCTTCCACCCTAAGCGCCCCTGGATCCTGGTCAGCTTG
CACAGCGGCGTCATCCAGCTGTGGGACTACCGGATGCACACGCTCCTCGA
GAAGTTCGACGAGCACGACGGACCGGTGCGAGGCGTGGCCTTCCACCAGC
AGATGCCGCTCTTCGTCTCTGGCGGCGACGACTACAAGATCAAGGTGTGG
AACTACAAGCAACGCCGATGCATTTTTACCCTCCTGGCCCATTTGGACTA
TGTGCGCACGGTGGCTTTCCACCACGAATACCCATGGATTCTGAGCGCCT
CCGACGATCAGACCATACGCATCTGGAACTGGCAGTCGCGCAACTGCATC
TGCGTGCTGACGGGCCACAACCACTATGTGATGTGCGCCCAGTTCCATCC
CACGGAGGATCAGATCGTTTCTGCTTCACTCGATCAGACGGTGCGCGTGT
GGGACATTTCGGGGCTGCGTAAGAAGAACGTGGCTCCCGGGCCCGGTGGG
CTTGATGACCACCTAAAGGGTCATCCGGGTGCCACTGATCTGTTTGGCCA
AGCAGATGCCGTGGTCAAGCACGTGCTCGAGGGCCACGACCGTGGCGTCA
ACTGGGCCAGTTTCCATCCCACCCTGCCGCTGATTGTCTCCGGTGCCGAT
GATCGCCTTGTGAAGTTGTGGCGCATGAACGAGTACAAGGCTTGGGAGGT
CGACACCTGTCGCGGTCACTACAACAACGTGTCCAGCGTGTTGTTCCATC
CCAGGCAAGACCTGATTCTCTCCAACGGCGAAGATCGCAGTATTCGCGTC
TGGGACATGACCAAGCGCCAGTGCCTCTTTACATTCCGGCGGGACAACGA
GCGCTTCTGGATACTTACAGCGCATCCGACCCTGAATCTGTTTGCAGCTG
GCCACGATGGAGGTATGGTGGTCTTTAAACTGGAGCGAGAGCGTCCTGCA
TATGCTGTCCACGGGAATATTCTCTACTACGTCAAGGAACGTTTCCTTCG
CAAACTGGACTTTACCACCACTAAGGACACTGTGGTTATGCAGCTTCGAC
CAGGCAAGTCGCCGGTGTACAGCATGTCGTACAACCCAGCACTGAACGCC
GTGCTAATCTGCACGCGCACCAACAACCTGGAGAACAGCACCTACGATCT
TTGCCAAATCCCCAAGGACACCGAGAGCCAAAGTGAGTCGGACAGCAAGC
GAAGCTCTGGAATCACGGCCATCTGGGTGGCACGCAATCGGTTTGCAGTG
CTTGATCGCAACCAGCAGTTGGTGATCAAGAACTTCAAGAATGAGGTGAC
CAAGAAGTTGCCAACTTTCTGCGAGGAGATCTTCTATGCCGGTACGGGAA
TGCTGCTCATTCGGGACCCTGAGTTTGTCACACTGTACGAAGTTCAGCGC
CTAGTCTCCGTTGGAAGCATTAAACTGGCCAAGTGCCGCTACGTGGTGTG
GTCTCCGGACATGTCCTTGGTCGCTCTACTCTGCAAGCACTCGGTTACAA
TCTGCGACCGAAGACTTCAGTACTTGTGCACCGTGCAGGAGAACTGCCGC
GTGAAGTCTGGCGCCTGGGACGAGTCTGGAGTGTTTATCTACACCACTAG
CAACCACATTAAGTACGCCATTACAAACGGGGACCACGGCATCATCCGTA
CGCTGGACCTACCCATTTATCTGACACGCGTCAAGGGCAACCAAGTGTTC
TGCTTGGACCGGGAGTGCCGCACCCGTGTGCTCCACATCGATCCTACGGA
GTACAAGTTTAAGCTTGCCCTGATTCAACGCAAGTACGATGAAGTACTGC
ATATGGTGAGAAATGCCCGCCTAGTGGGTCAGAGCATCATTGCTTACCTG
CAGCAAAAGGGTTATCCAGAGGTGGCACTGCATTTTGTCAAGGATGAGAA
AACCCGATTTGGACTCGCTCTGGAGTGCGGTAACATCGAAATTGCTCTCG
AAGCAGCCAAGGCTCTCGATGACAAGGATTGCTGGGATCGCCTGGGACAG
AGTGCGCTGCTCCAAGGAAACCACCAGGTGGTAGAGATGTGCTACCAGCG
GACCAAGAACTTTGACAAGCTTAGCTTCCTCTACCTGATCACCGGCAACT
TGGAGAAGCTCAAGAAGATGAACAAGATTGCCGAGATTCGCAAGGATGTT
TCCGCCCAGTACCAGGGTGCCCTCCTTCTCGGTGACGTCAAGGAGCGGGT
AAACATCCTCAAAAACTGCGGACAACTTTCGTTAGCTTATCTCACAGCCG
CTACTCATGGATTCGATGAGCTCACTGAGTCCCTGGGCGAATCGATAACC
TCGCAGGGTAACAGCCTTCCCGAGGTGAATCCCAATGCCCAGTTGTTGCA
GCCACCAGTGCCCATCCAGCAGCTTGAAACCAATTGGCCGTTGCTGTCCG
TGTCCAAGGGCTTCTTTGAAGGCGCCATGGTCACCAGGGCTGGCTCCAGT
GCCACTGCCCGACAGGCGCTGAACATCAACGCCGATGCTGCACTGTTGGA
CGAGCATAATGGTGGTGGAGATGGTTGGGGAGCGGATGCCGACTTGGGAC
TAGATGAAGACGGAGATGACGAGATGCACGACGCGCTGAGCAACGATGGC
GATGGTGGTGCGGGTGGAGAGGAGGGTGCCGGCTGGGATGTGGGCGATGA
TGACCTGGTTGTGCCCGAGGAACTGGCCTCCAAGATCAAGGCCTCAGCCC
TCGACAGCAACTACTATGCGGCTCCCAACAAAGGCTTGTCTCCTGCCCAA
CAATGGGCCAACAACTCGCCTCTGGTCCTGGACCATGTCAAGGCCGGATC
ATTCGAAACCGCCTTCCGTTTACTGCACGATCAGCTGGGAGTGGTCAATT
TCCAGCCATTCAAGACACTCTTCCTGCAGAACTACGCCTGCTCTCGAACG
AGCTACACGGCCAATCCGAATCTGCAATCCCTAAGTGGTTACCCACTTCG
CAACTACTCCGAGACAAACATCAAGCTGCAGCGTCCTGCGGTTGGCATTA
AACTGAATGATTTGGTGGCACGCCTGCAAGCTGGGTACCAACTGACAACT
TCTGGAAAGTTCTCCGAGGCAGTAGAGAAGTTCCATTCCATCTTGATTAG
CATCCCACTGCTGGTAGTGGACACGAAGCTAGATGCGGCGGAGGCCCAGC
AACTCTTAAGGATCTGCGCTGAGTATATCGTTGGCCTGAAGATGGAGACT
GTGCGCAAGGGCATGCCCAAGTCGACGCTTGAGGAGCAAAAGCGTCTGTG
CGAGATGGCCGCCTACTTCACGCACTGCAAGCTTCAGCCCGTGCACCAAA
TCCTCACCCTGCGTACCGCCCTCAATATGTTCTTCAAGCTGAAGAACTAC
AAGACGGCCGCCTCATTTGCCCGTCGTCTCCTGGAACTGGCGCCACGACC
GGACGTTGCCCAGCAGGTGCGCAAGATCCTGCAGGCCTGCGAGGTAAATC
CCGTGGACGAGCATCAGCTGCAGTACGAGGAGTTTAATCCGTTCACAATC
TGCGGCATCAGCTGGAAGCCACTGTATAGGGGTAAACCCGAAGTGACCTG
TCCCTTCTGCTCCTCCTCTTTCGACCCTCAGTTCAAGGGCAATCTCTGCA
CAGTTTGCGAAGTGAGCCAGATCGGCAAGGATAGCATTGGCCTGCGCATT
TCAAACCTGCAATTCCGCTAGAAGCTTTCTAGACCAT

BS03245.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
alphaCOP-RA 3705 CG7961-PA 1..3705 17..3721 18525 100 Plus
alphaCOP-RB 3705 CG7961-PB 1..3705 17..3721 18525 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
alphaCOP-RA 4078 CG7961-RA 242..3947 16..3721 18530 100 Plus
alphaCOP-RB 3970 CG7961-RB 134..3839 16..3721 18530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:25:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1641197..1643957 3721..961 13805 100 Minus
3L 28110227 3L 1644010..1644958 964..16 4745 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:25:06 has no hits.

BS03245.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:05 Download gff for BS03245.complete
Subject Subject Range Query Range Percent Splice Strand
alphaCop-RA 1..3705 17..3721 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:48 Download gff for BS03245.complete
Subject Subject Range Query Range Percent Splice Strand
alphaCop-RA 136..3840 17..3721 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:57:19 Download gff for BS03245.complete
Subject Subject Range Query Range Percent Splice Strand
alphaCop-RB 135..3839 17..3721 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:04:05 Download gff for BS03245.complete
Subject Subject Range Query Range Percent Splice Strand
alphaCop-RA 127..3840 10..3721 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:00:20 Download gff for BS03245.complete
Subject Subject Range Query Range Percent Splice Strand
alphaCOP-RB 135..3839 17..3721 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:00:20 Download gff for BS03245.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1641197..1643955 963..3721 100 <- Minus
3L 1644012..1644957 17..962 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:57:19 Download gff for BS03245.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1641197..1643955 963..3721 100 <- Minus
arm_3L 1644012..1644957 17..962 100   Minus

BS03245.pep Sequence

Translation from 16 to 3720

> BS03245.pep
MLTNFESKSARVKGLSFHPKRPWILVSLHSGVIQLWDYRMHTLLEKFDEH
DGPVRGVAFHQQMPLFVSGGDDYKIKVWNYKQRRCIFTLLAHLDYVRTVA
FHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTEDQI
VSASLDQTVRVWDISGLRKKNVAPGPGGLDDHLKGHPGATDLFGQADAVV
KHVLEGHDRGVNWASFHPTLPLIVSGADDRLVKLWRMNEYKAWEVDTCRG
HYNNVSSVLFHPRQDLILSNGEDRSIRVWDMTKRQCLFTFRRDNERFWIL
TAHPTLNLFAAGHDGGMVVFKLERERPAYAVHGNILYYVKERFLRKLDFT
TTKDTVVMQLRPGKSPVYSMSYNPALNAVLICTRTNNLENSTYDLCQIPK
DTESQSESDSKRSSGITAIWVARNRFAVLDRNQQLVIKNFKNEVTKKLPT
FCEEIFYAGTGMLLIRDPEFVTLYEVQRLVSVGSIKLAKCRYVVWSPDMS
LVALLCKHSVTICDRRLQYLCTVQENCRVKSGAWDESGVFIYTTSNHIKY
AITNGDHGIIRTLDLPIYLTRVKGNQVFCLDRECRTRVLHIDPTEYKFKL
ALIQRKYDEVLHMVRNARLVGQSIIAYLQQKGYPEVALHFVKDEKTRFGL
ALECGNIEIALEAAKALDDKDCWDRLGQSALLQGNHQVVEMCYQRTKNFD
KLSFLYLITGNLEKLKKMNKIAEIRKDVSAQYQGALLLGDVKERVNILKN
CGQLSLAYLTAATHGFDELTESLGESITSQGNSLPEVNPNAQLLQPPVPI
QQLETNWPLLSVSKGFFEGAMVTRAGSSATARQALNINADAALLDEHNGG
GDGWGADADLGLDEDGDDEMHDALSNDGDGGAGGEEGAGWDVGDDDLVVP
EELASKIKASALDSNYYAAPNKGLSPAQQWANNSPLVLDHVKAGSFETAF
RLLHDQLGVVNFQPFKTLFLQNYACSRTSYTANPNLQSLSGYPLRNYSET
NIKLQRPAVGIKLNDLVARLQAGYQLTTSGKFSEAVEKFHSILISIPLLV
VDTKLDAAEAQQLLRICAEYIVGLKMETVRKGMPKSTLEEQKRLCEMAAY
FTHCKLQPVHQILTLRTALNMFFKLKNYKTAASFARRLLELAPRPDVAQQ
VRKILQACEVNPVDEHQLQYEEFNPFTICGISWKPLYRGKPEVTCPFCSS
SFDPQFKGNLCTVCEVSQIGKDSIGLRISNLQFR*

BS03245.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
alphaCOP-PA 1234 CG7961-PA 1..1234 1..1234 6525 100 Plus
alphaCOP-PB 1234 CG7961-PB 1..1234 1..1234 6525 100 Plus
beta'COP-PA 914 CG6699-PA 13..792 7..786 669 25.9 Plus
Lis-1-PG 411 CG8440-PG 109..376 10..289 297 27.4 Plus
Lis-1-PF 411 CG8440-PF 109..376 10..289 297 27.4 Plus
Lis-1-PG 411 CG8440-PG 306..409 60..163 235 38.5 Plus
Lis-1-PG 411 CG8440-PG 306..408 18..120 203 35 Plus