Clone BS03247 Report

Search the DGRC for BS03247

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:32
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptLrch-RA
Protein status:BS03247.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03247.3prime Sequence

821 bp (756 high quality bases) assembled on 2005-11-30

> BS03247.3prime
ATGGTCTAGAAAGCTTTTAGGCCAATGGCGTTGGCGACATTGTGGCACGT
GTCGTTCTGGTAGGCGACTTGGTGGGCGTGGCTGCTCCACTGCTGTTGCC
ACTGCCGCAGCCACCATTTCCATGAAGCCGGAAAAGCTCACCCACCGTAA
TGGCCACTTGGACGGCACCTTTACCCTCCAGCACGTCGGCAGCGCAGCAA
ATTAGATTCTCATCTACGCCAATGCGTCGACACGCCTCCAGAAAGTTATC
CACATTCCGCCGGCACCTGGCCATTGTCAACTTATTGACACCGGGAGATG
GCACATGAATGCTGGCCACTGATCGCGGACGCACATAGTTGGCCAAATGA
CACAGTATAACCCCATCCGTCAGAGCAGAGGCAATATCCACAGGCAACGT
CATCTTGAGACGCGTCTCAATGATAGTTCTCAGCTGTGACATCAACTCAG
TCTCCTCCCTTTGGCGATCAAACTCCCGGCGCATGGTGAAGCTCAGCTTC
TCCGCGGGGATGTCATGGTTCCAGGTCACCGAACGATGCGTCTTTACTGT
GCCAAGTTTGGTGGTTGAGCTGACTGGGGATTTAATGGTGGTGCTACTGA
CTATTCCCACTGTTGTTTGGACTCCTCCACCATTGGACGTATTAAATTTG
CTTGTGCCATTCTTCATGGGACTCTGTGGCTTAACGTAGCCCAAACAATC
CGATGAATTTGCGGAGCGAATGTCGGATGTGGATGCTGGCTTTATTTCTG
TAATCCGAGAGGGAATCACCTTCTGGATGGGTTTCTTTGGTATAACAACA
TCATCGACTCCATTTCCGTTC

BS03247.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:29:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG6860-PA 2430 CG6860-RA 1626..2430 821..17 4025 100 Minus
CG6860-PB 3408 CG6860-RB 1626..2238 821..209 3065 100 Minus
CG6860-PB 3408 CG6860-RB 3216..3408 209..17 965 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
Lrch-RA 3449 CG6860-RA 1959..2765 821..15 4035 100 Minus
Lrch-RC 5650 CG6860-RC 1959..2584 821..196 3070 99.4 Minus
Lrch-RB 4427 CG6860-RB 1959..2584 821..196 3070 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 14:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17372905..17373301 425..821 1985 100 Plus
2L 23513712 2L 17368195..17368390 15..210 980 100 Plus
2L 23513712 2L 17372708..17372845 287..424 690 100 Plus
2L 23513712 2L 17372565..17372642 209..286 390 100 Plus
Blast to na_te.dros performed on 2015-02-03 14:07:09 has no hits.

BS03247.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:22:23 Download gff for BS03247.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6860-PA 1626..2430 17..821 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:35:54 Download gff for BS03247.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6860-PA 1626..2430 17..821 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:07:24 Download gff for BS03247.3prime
Subject Subject Range Query Range Percent Splice Strand
Lrch-RA 1959..2765 15..821 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:54:57 Download gff for BS03247.3prime
Subject Subject Range Query Range Percent Splice Strand
Lrch-RA 1959..2765 15..821 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:54:57 Download gff for BS03247.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 17368195..17368388 15..208 100 <- Plus
2L 17372565..17372642 209..286 100 <- Plus
2L 17372708..17372845 287..424 100 <- Plus
2L 17372905..17373301 425..821 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:07:24 Download gff for BS03247.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17368195..17368388 15..208 100 <- Plus
arm_2L 17372565..17372642 209..286 100 <- Plus
arm_2L 17372708..17372845 287..424 100 <- Plus
arm_2L 17372905..17373301 425..821 100   Plus

BS03247.5prime Sequence

749 bp (673 high quality bases) assembled on 2005-11-30

> BS03247.5prime
GAAGTTATCAGTCGACATGGCAGCAACGGTTTACCAACGCCTACATAGCG
TCGCAGTCGGCGTCGGCAGCGCCGCTGGCAGCGCCATCGGCAGCGGGTCG
GCTTCCCTTCCAGGATCTGGAACAGGATCGGGATCTGGAATAGGCCACGC
TGGAAACACCTCCTCCTCCACCTCGTCTGCCCTGCTTAGTCATTCCCAGC
TGACGCGCTCCCTGGAAAGAATCCTGGAAGAAGCGCACTTCAGCGGCGAA
CTGATCCTGACCAATCGCAAGCTGAAGGACTTTCCCAGGACTGGAACGAA
GTACTCACTTACCGACACTGTCATCGCAGATCTTTCCCGGAATAGATTTG
CCGAGCTGCCCGAGGAAGTGACTACGTTTGCCTTCCTAGAGACCCTGCTA
CTGTATCACAATACGATTCGCAGCATTCCGGAATCGGTGAAGCAGCTATC
ATCGTTGACCTATTTAGATTTGCGCAGCAATCAGTTGTCCTCGCTGCCAC
GCGAGATTTGTTTCCTGCCTCTTCAGGTTCTGCTGGTTTCCAACAATCGA
TTGACTTCGTTACCAGATGAACTGGGTCGATTGGATCAGACACTGACCGA
TCTGGATGCTTCGTATAATCAGTTGGCCAATCTACCCGCTCGTCTGGGTG
AGCTAAGATCCCTGCGCTCGCTCTCGATGAGAAGCAATCACTTGCTGTAT
CTGCCCAGAGAGCTTACCTGTTTGAATTTGATATCACTGGACGTGAGCA

BS03247.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:29:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG6860-PA 2430 CG6860-RA 1..733 17..749 3615 99.7 Plus
CG6860-PB 3408 CG6860-RB 1..733 17..749 3615 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:58:28
Subject Length Description Subject Range Query Range Score Percent Strand
Lrch-RC 5650 CG6860-RC 334..1066 17..749 3635 99.7 Plus
Lrch-RB 4427 CG6860-RB 334..1066 17..749 3635 99.7 Plus
Lrch-RA 3449 CG6860-RA 334..1066 17..749 3635 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:58:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17374329..17374751 749..327 2085 99.5 Minus
2L 23513712 2L 17383470..17383782 329..17 1565 100 Minus
Blast to na_te.dros performed 2015-02-11 09:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle2 7220 HMS-Beagle2 Beagle2 7220bp 144..198 101..47 131 70.9 Minus
HMS-Beagle2 7220 HMS-Beagle2 Beagle2 7220bp 7027..7081 101..47 131 70.9 Minus

BS03247.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:22:24 Download gff for BS03247.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6860-PA 1..732 17..748 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:35:56 Download gff for BS03247.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6860-PB 1..732 17..748 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:37:21 Download gff for BS03247.5prime
Subject Subject Range Query Range Percent Splice Strand
Lrch-RA 331..1065 14..748 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:12:58 Download gff for BS03247.5prime
Subject Subject Range Query Range Percent Splice Strand
Lrch-RA 331..1065 14..748 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:12:58 Download gff for BS03247.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 17374330..17374748 330..748 99 <- Minus
2L 17383470..17383785 14..329 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:37:21 Download gff for BS03247.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17374330..17374748 330..748 99 <- Minus
arm_2L 17383470..17383785 14..329 99   Minus

BS03247.complete Sequence

2462 bp assembled on 2008-01-02

GenBank Submission: FJ634703

> BS03247.complete
GAAGTTATCAGTCGACATGGCAGCAACGGTTTACCAACGCCTACATAGCG
TCGCAGTCGGCGTCGGCAGCGCCGCTGGCAGCGCCATCGGCAGCGGGTCG
GCTTCCCTTCCAGGATCTGGAACAGGATCGGGATCTGGAATAGGCCACGC
TGGAAACACCTCCTCCTCCACCTCGTCTGCCCTGCTTAGTCATTCCCAGC
TGACGCGCTCCCTGGAAAGAATCCTGGAAGAAGCGCACTTCAGCGGCGAA
CTGATCCTGACCAATCGCAAGCTGAAGGACTTTCCCAGGACTGGAACGAA
GTACTCACTTACCGACACTGTCATCGCAGATCTTTCCCGGAATAGATTTG
CCGAGCTGCCCGAGGAAGTGACTACGTTTGCCTTCCTAGAGACCCTGCTA
CTGTATCACAATACGATTCGCAGCATTCCGGAATCGGTGAAGCAGCTATC
ATCGTTGACCTATTTAGATTTGCGCAGCAATCAGTTGTCCTCGCTGCCAC
GCGAGATTTGTTTCCTGCCTCTTCAGGTTCTGCTGGTTTCCAACAATCGA
TTGACTTCGTTACCAGATGAACTGGGTCGATTGGATCAGACACTGACCGA
TCTGGATGCTTCGTATAATCAGTTGGCCAATCTACCCGCTCGTCTGGGTG
AGCTAAGATCCCTGCGCTCGCTCTCGTTGAGAAGCAATCACTTGCTGTAT
CTGCCCAGAGAGCTTACCTGTTTGAGTTTGATATCACTGGACGTGAGCAA
CAACAAGATCGCTAGCCTGCCTCTCGAGATTCGTCACATGAGCACTTTGG
TAGAGCTTCAGCTAGAGAACAATCCTCTGACCTCGCCTCCAGCAAGCCTA
TGCATGCGCGGCCTGGTGCACGTGTTCAAGTTTTTGGAAACGCAGGCCAC
CAAGGACGAGAAGGGATCCCGGTCAGGTGGCAACTACGATGGGTACACCA
CATTGCGAAGAGCTCCTCGACATAATTCCAGCGGCAATGTTCTTGAAGCT
AGCACCACTGGCAGCACTAACAACCAGCGGAGGCATCAAGTCGACTCGGG
TTACAACACCAGCGATGGTTTGGACAAGCGCTGGTCGCACGATGCTCCTA
CTAAATCGAAAACGGATTCACCGCTGCATTGTGTTTCCAATTCGACAGCA
GCCACTTTGCCCAGGACGCTGCCAAGTGCGGTTCATTCGCAAGCGGATCT
AATGGACGCATCCCTTACCTCCAGCACTAGCACCATTGTGGATGAGAGTC
TCACCTTGAGTCCCACAGCATCGCCCTGCAAGTTAAGCTATGCACACTCG
AATAGCTCCAGTAATGGATCGTCGCCAGATCAGGACGATGACATAATGCT
GGACCACCAGGAGCGCACTGTTCACCACGCCAATGGAAGATCCGGAAAAG
GTCTTGGCAATATTCAGACCTACAAGGAGTACAAGGAGGCCCTTAAGCAG
CAGCGCAACCAGGAGATCAGCGTCTATAAGCAAAAGCATCCGAATGCCAA
CCACAGTCCCAATGACGACGAGGATCTTTCTCCGTCACCGCCGAGCATTT
CAAACGGATCTTCCTCGAACACACTGCCAAAGTCTATTATGAAACAGAAT
AGCAACCAAATTGGTCACAATGGGAATGGAAATGGAAGCGCGAACGGAAA
TGGAGTCGATGATGTTGTTATACCAAAGAAACCCATCCAGAAGGTGATTC
CCTCTCGGATTACAGAAATAAAGCCAGCATCCACATCCGACATTCGCTCC
GCAAATTCATCGGATTGTTTGGGCTACGTTAAGCCACAGAGTCCCATGAA
GAATGGCACAAGCAAATTTAATACGTCCAATGGTGGAGGAGTCCAAACAA
CAGTGGGAATAGTCAGTAGCACCACCATTAAATCCCCAGTCAGCTCAACC
ACCAAACTTGGCACAGTAAAGACGCATCGTTCGGTGACCTGGAACCATGA
CATCCCCGCGGAGAAGCTGAGCTTCACCATGCGCCGGGAGTTTGATCGCC
AAAGGGAGGAGACTGAGTTGATGTCACAGCTGAGAACTATCATTGAGACG
CGTCTCAAGATGACGTTGCCTGTGGATATTGCCTCTGCTCTGACGGATGG
GGTTATACTGTGTCATTTGGCCAACTATGTGCGTCCGCGATCAGTGGCCA
GCATTCATGTGCCATCTCCCGGTGTCAATAAGTTGACAATGGCCAGGTGC
CGGCGGAATGTGGATAACTTTCTGGAGGCGTGTCGACGCATTGGCGTAGA
TGAGAATCTAATTTGCTGCGCTGCCGACGTGCTGGAGGGTAAAGGTGCCG
TCCAAGTGGCCATTACGGTGGGTGAGCTTTTCCGGCTTCATGGAAATGGT
GGCTGCGGCAGTGGCAACAGCAGTGGAGCAGCCACGCCCACCAAGTCGCC
TACCAGAACGACACGTGCCACAATGTCGCCAACGCCATTGGCCTAAAAGC
TTTCTAGACCAT

BS03247.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:52:43
Subject Length Description Subject Range Query Range Score Percent Strand
Lrch-RA 2430 CG6860-PA 1..2430 17..2446 12150 100 Plus
Lrch-RC 3240 CG6860-PC 1..2251 17..2267 11195 99.8 Plus
Lrch-RB 3408 CG6860-PB 1..2251 17..2267 11195 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:52:44
Subject Length Description Subject Range Query Range Score Percent Strand
Lrch-RA 3449 CG6860-RA 334..2765 17..2448 12160 100 Plus
Lrch-RC 5650 CG6860-RC 334..2584 17..2267 11195 99.8 Plus
Lrch-RB 4427 CG6860-RB 334..2584 17..2267 11195 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:52:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17372905..17373521 2038..1422 3070 99.8 Minus
2L 23513712 2L 17373578..17374156 1426..848 2895 100 Minus
2L 23513712 2L 17374231..17374751 847..327 2605 100 Minus
2L 23513712 2L 17383470..17383782 329..17 1565 100 Minus
2L 23513712 2L 17368195..17368390 2448..2253 980 100 Minus
2L 23513712 2L 17372708..17372845 2176..2039 690 100 Minus
2L 23513712 2L 17372565..17372642 2254..2177 390 100 Minus
Blast to na_te.dros performed 2014-11-28 07:52:42
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle2 7220 HMS-Beagle2 Beagle2 7220bp 144..198 101..47 131 70.9 Minus
HMS-Beagle2 7220 HMS-Beagle2 Beagle2 7220bp 7027..7081 101..47 131 70.9 Minus

BS03247.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:06 Download gff for BS03247.complete
Subject Subject Range Query Range Percent Splice Strand
CG6860-RA 1..2430 17..2446 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:37:55 Download gff for BS03247.complete
Subject Subject Range Query Range Percent Splice Strand
CG6860-RA 366..2793 17..2444 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:23 Download gff for BS03247.complete
Subject Subject Range Query Range Percent Splice Strand
Lrch-RA 334..2761 17..2444 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:04:06 Download gff for BS03247.complete
Subject Subject Range Query Range Percent Splice Strand
CG6860-RA 363..2797 14..2448 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:05:48 Download gff for BS03247.complete
Subject Subject Range Query Range Percent Splice Strand
Lrch-RA 334..2761 17..2444 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:05:48 Download gff for BS03247.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17368199..17368388 2255..2444 100 <- Minus
2L 17372565..17372642 2177..2254 100 <- Minus
2L 17372708..17372845 2039..2176 100 <- Minus
2L 17372905..17373517 1426..2038 100 <- Minus
2L 17373579..17374156 848..1425 100 <- Minus
2L 17374231..17374748 330..847 100 <- Minus
2L 17383470..17383782 17..329 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:23 Download gff for BS03247.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17368199..17368388 2255..2444 100 <- Minus
arm_2L 17372565..17372642 2177..2254 100 <- Minus
arm_2L 17372708..17372845 2039..2176 100 <- Minus
arm_2L 17372905..17373517 1426..2038 100 <- Minus
arm_2L 17373579..17374156 848..1425 100 <- Minus
arm_2L 17374231..17374748 330..847 100 <- Minus
arm_2L 17383470..17383782 17..329 100   Minus

BS03247.pep Sequence

Translation from 16 to 2445

> BS03247.pep
MAATVYQRLHSVAVGVGSAAGSAIGSGSASLPGSGTGSGSGIGHAGNTSS
STSSALLSHSQLTRSLERILEEAHFSGELILTNRKLKDFPRTGTKYSLTD
TVIADLSRNRFAELPEEVTTFAFLETLLLYHNTIRSIPESVKQLSSLTYL
DLRSNQLSSLPREICFLPLQVLLVSNNRLTSLPDELGRLDQTLTDLDASY
NQLANLPARLGELRSLRSLSLRSNHLLYLPRELTCLSLISLDVSNNKIAS
LPLEIRHMSTLVELQLENNPLTSPPASLCMRGLVHVFKFLETQATKDEKG
SRSGGNYDGYTTLRRAPRHNSSGNVLEASTTGSTNNQRRHQVDSGYNTSD
GLDKRWSHDAPTKSKTDSPLHCVSNSTAATLPRTLPSAVHSQADLMDASL
TSSTSTIVDESLTLSPTASPCKLSYAHSNSSSNGSSPDQDDDIMLDHQER
TVHHANGRSGKGLGNIQTYKEYKEALKQQRNQEISVYKQKHPNANHSPND
DEDLSPSPPSISNGSSSNTLPKSIMKQNSNQIGHNGNGNGSANGNGVDDV
VIPKKPIQKVIPSRITEIKPASTSDIRSANSSDCLGYVKPQSPMKNGTSK
FNTSNGGGVQTTVGIVSSTTIKSPVSSTTKLGTVKTHRSVTWNHDIPAEK
LSFTMRREFDRQREETELMSQLRTIIETRLKMTLPVDIASALTDGVILCH
LANYVRPRSVASIHVPSPGVNKLTMARCRRNVDNFLEACRRIGVDENLIC
CAADVLEGKGAVQVAITVGELFRLHGNGGCGSGNSSGAATPTKSPTRTTR
ATMSPTPLA*

BS03247.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
Lrch-PA 809 CG6860-PA 1..809 1..809 4127 100 Plus
Lrch-PC 1079 CG6860-PC 1..756 1..756 3825 99.3 Plus
Lrch-PB 1135 CG6860-PB 1..756 1..756 3825 99.3 Plus
Lrch-PB 1135 CG6860-PB 1073..1135 747..809 328 100 Plus
f-cup-PD 474 CG9611-PD 86..339 79..312 255 31.8 Plus
f-cup-PI 522 CG9611-PI 134..387 79..312 255 31.8 Plus
f-cup-PD 474 CG9611-PD 41..212 105..275 190 31.2 Plus
f-cup-PD 474 CG9611-PD 37..192 124..278 165 35 Plus