Clone BS03248 Report

Search the DGRC for BS03248

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:32
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG13624-RA
Protein status:BS03248.pep: full length peptide match
Sequenced Size:2300

Clone Sequence Records

BS03248.3prime Sequence

814 bp (763 high quality bases) assembled on 2005-11-30

> BS03248.3prime
ATGGTCTAGAAAGCTTCTATAAAACGAAAATTGAAGGATTATAAGATATT
TCCACAGCTTTCACATTGAACTCACTGTGTTCAATTTCAAGGCCGAACAA
CTTAATTTTGTTGGCCTCGTGCTGCGCCTTCTTCTTCAGGCGACAGGCGC
GTGAGGCCAGCTTGTTCTTCTCCTTGCGCGACTTGGGGCGCACATTGAAT
GGCAGCTCGGAAACAGGAGTCATGTCATTGATGGTGCGGCTTAGCTTGTC
CAGTTCCTTGCCAATATTGTGCAGCTTCCTGGCATTGGGAGTTAAATCGT
TACCATCGCCCTTGCGGGCCTTGCCACTGTGCTTGTACACCTTAATGCCT
CGCACGGAGCACGTTGGACTGAAGACGGGGTCTGTCACCTCGTTCAGCAC
ATGAGGATCCTCGAGCTTCGATTGAAAGACCAGTCTCTTTCCCTTGGGTC
CTTTGGCCTGAACATTGTACTGCCAGAAAAATCGCTCTTTGCCCTTGCTA
CTGGACAAATGGTTTGGTGTCGAGGTACGCGTTTCATCTTCATCCTCAGA
GAGTCCATTGTCGCTGCTACAATCGTCGTAGTTATCGCTATTCTCACTCG
AATTGTCATCCTCATCGTCCTGCGAGAAGTCAATGCCATCCGGGGACAAG
ACACTGCCCGTGCTCAGTGAAGAGAAGCTCTCGGCCTCGGCCAGCGAGCC
GGTGGAGAGTAAATGCTGTCGTGGCTCCCGCCGCATCCAGATGTGCTCCA
ATCCCAAGTGCGTCGGAGCCGACGAGCTGAGGCGACTCAGCTGGGGAGTT
CTCAACGGCGCTCT

BS03248.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:29:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG13624-PB 2268 CG13624-RB 1490..2268 795..17 3895 100 Minus
CG13624-PD 2268 CG13624-RD 1490..2268 795..17 3895 100 Minus
CG13624-PA 2268 CG13624-RA 1490..2268 795..17 3895 100 Minus
CG13624-PC 2268 CG13624-RC 1490..2268 795..17 3895 100 Minus
CG13624-PE 2445 CG13624-RE 1490..2209 795..76 3600 100 Minus
CG13624-PF 2445 CG13624-RF 1490..2209 795..76 3600 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:09:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG13624-RG 3698 CG13624-RG 2247..3044 814..16 3970 99.9 Minus
CG13624-RC 4228 CG13624-RC 2777..3574 814..16 3970 99.9 Minus
CG13624-RA 3864 CG13624-RA 1904..2701 814..16 3970 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24560890..24561371 332..814 2365 99.8 Plus
3R 32079331 3R 24560507..24560824 16..333 1590 100 Plus
Blast to na_te.dros performed 2015-02-10 23:09:20
Subject Length Description Subject Range Query Range Score Percent Strand
transib1 2167 transib1 TRANSIB1 2167bp 540..625 614..526 112 62.9 Minus

BS03248.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:22:25 Download gff for BS03248.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13624-PA 1472..2268 17..814 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:35:57 Download gff for BS03248.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13624-PC 1472..2268 17..814 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:38:03 Download gff for BS03248.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13624-RD 1724..2527 8..814 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:27:01 Download gff for BS03248.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13624-RA 1904..2707 8..814 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:27:01 Download gff for BS03248.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24560501..24560822 8..331 98 <- Plus
3R 24560890..24561371 332..814 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:38:03 Download gff for BS03248.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20386223..20386544 8..331 98 <- Plus
arm_3R 20386612..20387093 332..814 99   Plus

BS03248.5prime Sequence

839 bp (724 high quality bases) assembled on 2005-11-30

> BS03248.5prime
GAAGTTATCAGTCGACATGACAGAAAATCAGCTGTATCCCATGTCATCGG
AGTTCTTTGACACCGGCTCGAACAGCAGCAGCAACACACTTAAATACGAT
CTGTATTCCCTGGGCTCCACCGTTGTGGGGGCGGCGCTGCCCACGTTGAC
GATCAACACGGGCTACGGCAGCAGCAGCAGCAACAATAACAACACTAATA
ACAACAATAACAACAGCAGTAGTCACAGCAGCAGCAGCAACTGCTCCACC
AGCACCACAAATACCTGTAATGTAATGCTAAGTACAACGGCCATAACAAT
ACCACGCAGCAGCAACCACAACCAGATCCATCATCATCCGTATCAGCAGT
CCGATTTGCAGACACCGCGCCATCATCCCAGTCCTCTACACACGTTGCCC
AGCATGACCCATCAGCAAAATCAGCTTCAGCAGCAGCAGCAGCAGCAACA
CCACAACCAACAGCAGCAGCTGCAGCAATCGCATTTGGCACTGGGAGAGC
TTTCAGACTTTGGACTAGATGCACTGGATGCCGCTTCGCTATCGCCCACT
CTGCTGCAGGATGTGAGCCTGAGTGCTGTTTCTCCTCTAAGCACCACACT
CTACAATGGCAACACCAGTGGAGCAGGCAGCAGCAACGGAATAGGATCCG
GCAGTGGTGGCTACTTCACGCCCGACATGTCGCACAGCCTCAGCCTGAAT
GTGGTCAGTGAGCAGGTTCTGCTGCAGGAAGCCACAACCCCGAATGAGTT
GCTCTACGAGATGACACCCAACTCGAATGCCATGTGGAGTGATATCAGCA
GTGCCATTATCCATACCAAACACGAGCCATTCAGTCTGG

BS03248.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:29:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG13624-PB 2268 CG13624-RB 1..823 17..839 4090 99.8 Plus
CG13624-PD 2268 CG13624-RD 1..823 17..839 4090 99.8 Plus
CG13624-PA 2268 CG13624-RA 1..823 17..839 4090 99.8 Plus
CG13624-PC 2268 CG13624-RC 1..823 17..839 4090 99.8 Plus
CG13624-PE 2445 CG13624-RE 1..823 17..839 4090 99.8 Plus
CG13624-PF 2445 CG13624-RF 1..823 17..839 4090 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:15:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG13624-RG 3698 CG13624-RG 776..1598 17..839 4100 99.9 Plus
CG13624-RF 3805 CG13624-RF 433..1255 17..839 4100 99.9 Plus
CG13624-RE 3680 CG13624-RE 308..1130 17..839 4100 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:15:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24562020..24562842 839..17 4100 99.9 Minus
Blast to na_te.dros performed 2015-02-11 17:15:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2335..2671 152..483 377 60.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..7186 156..632 351 56.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..7086 169..477 334 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2319..2641 169..477 330 60.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6714..7004 188..470 255 57.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2543 190..454 236 60.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6714..6952 209..445 234 58.1 Plus
roo 9092 roo DM_ROO 9092bp 1049..1160 218..328 152 63.2 Plus

BS03248.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:22:26 Download gff for BS03248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13624-PA 1..823 17..839 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:35:59 Download gff for BS03248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13624-PF 1..823 17..839 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:46:44 Download gff for BS03248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13624-RC 1306..2128 17..839 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:04:22 Download gff for BS03248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13624-RE 308..1130 17..839 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:04:22 Download gff for BS03248.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24562020..24562842 17..839 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:46:44 Download gff for BS03248.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20387742..20388564 17..839 99   Minus

BS03248.complete Sequence

2300 bp assembled on 2008-08-14

GenBank Submission: FJ634704

> BS03248.complete
GAAGTTATCAGTCGACATGACAGAAAATCAGCTGTATCCCATGTCATCGG
AGTTCTTTGACACCGGCTCGAACAGCAGCAGCAACACACTTAAATACGAT
CTGTATTCCCTGGGCTCCACCGTTGTGGGGGCGGCGCTGCCCACGTTGAC
GATCAACACGGGCTACGGCAGCAGCAGCAGCAACAATAACAACACTAATA
ACAACAATAACAACAGCAGTAGTCACAGCAGCAGCAGCAACTGCTCCACC
AGCACCACAAATACCTGTAATGTAATGCTAAGTACAACGGCCATAACAAT
ACCACGCAGCAGCAACCACAACCAGATCCATCATCATCCGTATCAGCAGT
CCGATTTGCAGACACCGCGCCATCATCCCAGTCCTCTACACACGTTGCCC
AGCATGACCCATCAGCAAAATCAGCTTCAGCAGCAGCAGCAGCAGCAACA
CCACAACCAACAGCAGCAGCTGCAGCAATCGCATTTGGCACTGGGAGAGC
TTTCAGACTTTGGACTAGATGCACTGGATGCCGCTTCGCTATCGCCCACT
CTGCTGCAGGATGTGAGCCTGAGTGCTGTTTCTCCTCTAAGCACCACACT
CTACAATGGCAACACCAGTGGAGCAGGCAGCAGCAACGGAATAGGATCCG
GCAGTGGTGGCTACTTCACGCCCGACATGTCGCACAGCCTCAGCCTGAAT
GTGGTCAGTGAGCAGGTTCTGCTGCAGGAAGCCACAACCCCGAATGAGTT
GCTCTACGAGATGACACCCAACTCGAATGCCATGTGGAGTGATATCAGCA
GTGCCATTATCCATACCAAACACGAGCCATTCAGTCTGGACGATGACTAT
ATCTTTCCCAACGATAAGGCCGAAATACAGGCAGCCGATTTGTCTGACCT
TAATGGCGGCGATTTTCTGGATGTGATCGGAAATATAGAGGATTTCTTGC
CGCAGACCGCAGTCACTCAAAGTGTCAATTTCCTACTGTCGCCGCAAGCT
CAAGGACAGGATGCCCTGGTGGCACCGCCCATGGAACTTTTGCAACAGCA
ACAACAGAATCACCAGCAGCTGCAGGTCGGCAGCCTGCCGCAGTTGCAAA
CGCTGCTCACGCTTTCCCAGCAGCAGCAGTCGAACAGTTCCTCCACTAGT
CCGTATGAGATCTATCACAGTACGCCCCAAAAGCCGCAGCAGCAACAGCT
GTCCGCCAGCTTCTCGCCCGGCAGTCAGGCATCCCAATCGCCATTGACCC
CACCGCCGCCACCGCACGCCAATCGACCCCAGTACCAGATGGTTAAGTCG
CGCAACATGCAGGAATTGATCAAGAAGGGCTTTCCCATGTCCTCGCCGCC
AGAACGCTCGATCCTAAGTCAGTCCGCCGCCTTGAGTCCGGGTGGTAGCA
GTGGTTTTGGCAGCTCGGCTTCTGGCAACAGTACAACTACCAGTAATCAG
ACATCCGGATCAGCCGTGCGCAAATCGTTTGGCTACCAGAGCGCCGTTGA
GAACTCCCAGCTGAGTCGCCTCAGCTCGTCGGCTCCGACGCACTTGGGAT
TGGAGCACATCTGGATGCGGCGGGAGCCACGACAGCATTTACTCTCCACC
GGCTCGCTGGCCGAGGCCGAGAGCTTCTCTTCACTGAGCACGGGCAGTGT
CTTGTCCCCGGATGGCATTGACTTCTCGCAGGACGATGAGGATGACAATT
CGAGTGAGAATAGCGATAACTACGACGATTGTAGCAGCGACAATGGACTC
TCTGAGGATGAAGATGAAACGCGTACCTCGACACCAAACCATTTGTCCAG
TAGCAAGGGCAAAGAGCGATTTTTCTGGCAGTACAATGTTCAGGCCAAAG
GACCCAAGGGAAAGAGACTGGTCTTTCAATCGAAGCTCGAGGATCCTCAT
GTGCTGAACGAGGTGACAGACCCCGTCTTCAGTCCAACGTGCTCCGTGCG
AGGCATTAAGGTGTACAAGCACAGTGGCAAGGCCCGCAAGGGCGATGGTA
ACGATTTAACTCCCAATGCCAGGAAGCTGCACAATATTGGCAAGGAACTG
GACAAGCTAAGCCGCACCATCAATGACATGACTCCTGTTTCCGAGCTGCC
ATTCAATGTGCGCCCCAAGTCGCGCAAGGAGAAGAACAAGCTGGCCTCAC
GCGCCTGTCGCCTGAAGAAGAAGGCGCAGCACGAGGCCAACAAAATTAAG
TTGTTCGGCCTTGAAATTGAACACAGTGAGTTCAATGTGAAAGCTGTGGA
AATATCTTATAATCCTTCAATTTTCGTTTTATAGAAGCTTTCTAGACCAT

BS03248.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG13624-RG 2268 CG13624-PG 1..2268 17..2284 11325 100 Plus
CG13624-RC 2268 CG13624-PC 1..2268 17..2284 11325 100 Plus
CG13624-RA 2268 CG13624-PA 1..2268 17..2284 11325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13624-RG 3698 CG13624-RG 776..3044 17..2285 11330 100 Plus
CG13624-RC 4228 CG13624-RC 1306..3574 17..2285 11330 100 Plus
CG13624-RA 3864 CG13624-RA 433..2701 17..2285 11330 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:10:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24560890..24562842 1969..17 9750 99.9 Minus
3R 32079331 3R 24560507..24560824 2285..1968 1590 100 Minus
Blast to na_te.dros performed 2014-11-27 07:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2335..2671 152..483 377 60.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..7186 156..632 351 56.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..7086 169..477 334 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2319..2641 169..477 330 60.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6714..7004 188..470 255 57.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2543 190..454 236 60.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6714..6952 209..445 234 58.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6763..6957 1042..1242 170 60.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6742..6890 1042..1199 164 61.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6704..6875 1025..1210 158 59.9 Plus
roo 9092 roo DM_ROO 9092bp 1049..1160 218..328 152 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2330..2417 1042..1129 151 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6784..6874 1042..1129 141 64.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6925 983..1140 138 57 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2768..2852 1042..1129 135 64.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6817..6900 1042..1128 130 64.4 Plus
X-element 4740 X-element ROXELEMENT 4740bp 1749..1795 1042..1088 127 74.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1536..1591 1043..1101 116 71.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2384..2417 1042..1075 116 82.4 Plus
roo 9092 roo DM_ROO 9092bp 1115..1146 1043..1074 115 84.4 Plus

BS03248.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:50:41 Download gff for BS03248.complete
Subject Subject Range Query Range Percent Splice Strand
CG13624-RA 429..2703 17..2293 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:32 Download gff for BS03248.complete
Subject Subject Range Query Range Percent Splice Strand
CG13624-RD 253..2520 17..2284 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:41 Download gff for BS03248.complete
Subject Subject Range Query Range Percent Splice Strand
CG13624-RA 429..2696 17..2284 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:45 Download gff for BS03248.complete
Subject Subject Range Query Range Percent Splice Strand
CG13624-RA 433..2700 17..2284 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:45 Download gff for BS03248.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24560508..24560822 1970..2284 100 <- Minus
3R 24560890..24562842 17..1969 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:32 Download gff for BS03248.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20386230..20386544 1970..2284 100 <- Minus
arm_3R 20386612..20388564 17..1969 99   Minus

BS03248.pep Sequence

Translation from 16 to 2283

> BS03248.pep
MTENQLYPMSSEFFDTGSNSSSNTLKYDLYSLGSTVVGAALPTLTINTGY
GSSSSNNNNTNNNNNNSSSHSSSSNCSTSTTNTCNVMLSTTAITIPRSSN
HNQIHHHPYQQSDLQTPRHHPSPLHTLPSMTHQQNQLQQQQQQQHHNQQQ
QLQQSHLALGELSDFGLDALDAASLSPTLLQDVSLSAVSPLSTTLYNGNT
SGAGSSNGIGSGSGGYFTPDMSHSLSLNVVSEQVLLQEATTPNELLYEMT
PNSNAMWSDISSAIIHTKHEPFSLDDDYIFPNDKAEIQAADLSDLNGGDF
LDVIGNIEDFLPQTAVTQSVNFLLSPQAQGQDALVAPPMELLQQQQQNHQ
QLQVGSLPQLQTLLTLSQQQQSNSSSTSPYEIYHSTPQKPQQQQLSASFS
PGSQASQSPLTPPPPPHANRPQYQMVKSRNMQELIKKGFPMSSPPERSIL
SQSAALSPGGSSGFGSSASGNSTTTSNQTSGSAVRKSFGYQSAVENSQLS
RLSSSAPTHLGLEHIWMRREPRQHLLSTGSLAEAESFSSLSTGSVLSPDG
IDFSQDDEDDNSSENSDNYDDCSSDNGLSEDEDETRTSTPNHLSSSKGKE
RFFWQYNVQAKGPKGKRLVFQSKLEDPHVLNEVTDPVFSPTCSVRGIKVY
KHSGKARKGDGNDLTPNARKLHNIGKELDKLSRTINDMTPVSELPFNVRP
KSRKEKNKLASRACRLKKKAQHEANKIKLFGLEIEHSEFNVKAVEISYNP
SIFVL*

BS03248.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:56:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG13624-PG 755 CG13624-PG 1..755 1..755 3898 100 Plus
CG13624-PC 755 CG13624-PC 1..755 1..755 3898 100 Plus
CG13624-PA 755 CG13624-PA 1..755 1..755 3898 100 Plus
CG13624-PD 755 CG13624-PD 1..755 1..755 3898 100 Plus
CG13624-PB 755 CG13624-PB 1..755 1..755 3898 100 Plus