Clone Sequence Records
BS03258.3prime Sequence
876 bp (808 high quality bases) assembled on 2005-11-30
> BS03258.3prime
ATGGTCTAGAAAGCTTCTACTTCTGCTGGACCTTGCTGAGCAGGATGAGG
CGTTCACCCTCGGTGAGGTGTTCATAGAAAGTGGGAAAGTGTTCGTTCTG
CGTGAAGGTGGTAAGGAACTTCTGCAGGTTGTCGGCTATGTCGCCCTGGT
AGTTGGTTTCCTTCAGCAGCTCTTGCAACAGTTGTTCGTCCTCGGCGTTA
TCCTCGTCAGATTCGAACAGATCGGATATGTAACGCGGCTTGTCCGGATT
TCCGGGCGCATCCTCATCATCGCCATCCTCTTCGCTGTCCGTAAGAGGTT
CGTCGCTCTTGCCCTCCTGGAAGTGCTGGTACTCGGAGATCAAAACCTTG
AAGATCTTGACGAGAGCCGGAATTGTTACCCACTTCTGGGTTGTAGCTGC
CACGGATCGAGTACGTCTGCGCGTGTCGGTGGGGTCGTCCACCAGTTCTT
TGAATGTTATTGTGGTCAAACGGTTGTCCTGAGTGGCAACACCATACTCG
AACAGCTTGCACAGAGCCATGGTGGTGACCTTTCGCTCATAGTTTCCGAA
AAAGGAGTTCTGGCGGGAGAGCCAGTTTGTGAGTACAAACTGCATCGCTG
GCTCCCCGTTGGGTCCGGGAACGGTGGACAGAAAGTTGAGTACGGCGTCC
ATTTGCGTGAGGAACAAATGGGCGAAGATCAACACAAGATTCATTATCAC
TTTTAGGCACTCGAGGTTCTGCATTTTGCTTATCACAGCCTTCAGCAGCA
TGTCCACATTCTGGCCGAGCATGCTTCCCATCTTGGTGATAATAGTGATA
ACAAGACGTCCCATTTGGCCCGCCGCAGTCATTTCGCTGTTCATCGGATT
CAGAAGAACAGTGGGCACCACTTGCA
BS03258.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:29:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5252-PA | 3057 | Ranbp9-RA | 2198..3057 | 876..17 | 4250 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:13:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ranbp9-RD | 3243 | CG5252-RD | 2302..3161 | 876..17 | 4270 | 99.8 | Minus |
Ranbp9-RA | 3311 | CG5252-RA | 2370..3229 | 876..17 | 4270 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:13:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11415546..11416060 | 531..17 | 2575 | 100 | Minus |
3R | 32079331 | 3R | 11415144..11415492 | 876..528 | 1715 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:13:20 has no hits.
BS03258.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:22:34 Download gff for
BS03258.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5252-PA | 2199..3057 | 17..875 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:36:10 Download gff for
BS03258.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5252-PA | 2199..3057 | 17..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:02:05 Download gff for
BS03258.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ranbp9-RA | 2371..3229 | 17..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:02:03 Download gff for
BS03258.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ranbp9-RA | 2371..3229 | 17..875 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:02:03 Download gff for
BS03258.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11415145..11415490 | 530..875 | 99 | -> | Minus |
3R | 11415548..11416060 | 17..529 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:02:05 Download gff for
BS03258.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7240867..7241212 | 530..875 | 99 | -> | Minus |
arm_3R | 7241270..7241782 | 17..529 | 100 | | Minus |
BS03258.5prime Sequence
848 bp (795 high quality bases) assembled on 2005-11-30
> BS03258.5prime
GAAGTTATCAGTCGACATGTCGCTGCAATTCCAAAACGACTGCGGGGACT
CCGTTAAGCAAGCCATCATCGAGGAGCTGCAGAACCTACTTAGCTCGGAC
ACAGGAGTCCTGCAGCAGACAGAAAAGAGGATCAAGCAGCTGGAGTACAC
GGAAGGCTATGGCGTCTACCTGTCCGAGATCATTATGAACCAGGCGCACG
AGCTGCCACTCCGTCAAATCGCGATCGTGATGCTCACTCGTTACGTGGAG
AACCACTGGACGGATGACGATGATGTTAAAAGGAAAGCCAACGGTTGTAT
GGCCAGCGAGCAGGCCAAGCGAACCATACGAAACATTCTGCCAAACGGAC
TGTATGATCCCAATTCAAAGATACGCTCCTCAGTCGCGCATACCATCTCC
ACCATAGCCGCCACGGATTACCCACATTGTTGGGCGGAGCTGTTCGACAT
CATTGTCAAATGCCTGGGCGGCAATGAGGATTCCATACACGGTGCCATGC
AGGTGCTGCAGGATTTCAGCTACGACGTGGAGCAAATCAAGGAACTGGGT
CCAGTAGTCATACCCGAAGTCTATCGCATCTTCGACTCCGAGCAAAATTA
CTCGATCAAAACAAGAGTTTCGGCCATTCGCATCTTGAAGCCACTTTTTG
CATCCATTGCTGCACTGATCACCAACAAAGAAGAGCAGAGCACCATGATG
AGCTCCATTTTGACAAACTTTATGGACAAGCTTATGCATTACCTGAGCAT
GAATAGCGGCGCCGTTTCCAGTTTCCTGCTTCGCACGGAAATTATCAAGG
TGTTTACCCATTTGGTCAATGAGATGCCAAAGTACATCAACCCCTTTA
BS03258.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:29:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5252-PA | 3057 | Ranbp9-RA | 1..832 | 17..848 | 4160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:31:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ranbp9-RD | 3243 | CG5252-RD | 105..936 | 17..848 | 4160 | 100 | Plus |
Ranbp9-RA | 3311 | CG5252-RA | 173..1004 | 17..848 | 4160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:31:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11412913..11413559 | 154..800 | 3235 | 100 | Plus |
3R | 32079331 | 3R | 11412694..11412833 | 17..156 | 700 | 100 | Plus |
3R | 32079331 | 3R | 11413613..11413661 | 800..848 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 02:31:30 has no hits.
BS03258.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:22:35 Download gff for
BS03258.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5252-PA | 1..831 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:36:11 Download gff for
BS03258.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5252-PA | 1..831 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:41:56 Download gff for
BS03258.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ranbp9-RA | 171..1003 | 14..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:08:58 Download gff for
BS03258.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ranbp9-RA | 171..1003 | 14..847 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:08:58 Download gff for
BS03258.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11412692..11412832 | 14..155 | 99 | -> | Plus |
3R | 11412915..11413559 | 156..800 | 100 | -> | Plus |
3R | 11413614..11413660 | 801..847 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:41:56 Download gff for
BS03258.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7238414..7238554 | 14..155 | 99 | -> | Plus |
arm_3R | 7238637..7239281 | 156..800 | 100 | -> | Plus |
arm_3R | 7239336..7239382 | 801..847 | 100 | | Plus |
BS03258.complete Sequence
3089 bp assembled on 2008-01-02
GenBank Submission: FJ634706
> BS03258.complete
GAAGTTATCAGTCGACATGTCGCTGCAATTCCAAAACGACTGCGGGGACT
CCGTTAAGCAAGCCATCATCGAGGAGCTGCAGAACCTACTTAGCTCGGAC
ACAGGAGTCCTGCAGCAGACAGAAAAGAGGATCAAGCAGCTGGAGTACAC
GGAAGGCTATGGCGTCTACCTGTCCGAGATCATTATGAACCAGGCGCACG
AGCTGCCACTCCGTCAAATCGCGATCGTGATGCTCACTCGTTACGTGGAG
AACCACTGGACGGATGACGATGATGTTAAAAGGAAAGCCAACGGTTGTAT
GGCCAGCGAGCAGGCCAAGCGAACCATACGAAACATTCTGCCAAACGGAC
TGTATGATCCCAATTCAAAGATACGCTCCTCAGTCGCGCATACCATCTCC
ACCATAGCCGCCACGGATTACCCACATTGTTGGGCGGAGCTGTTCGACAT
CATTGTCAAATGCCTGGGCGGCAATGAGGATTCCATACACGGTGCCATGC
AGGTGCTGCAGGATTTCAGCTACGACGTGGAGCAAATCAAGGAACTGGGT
CCAGTAGTCATACCCGAAGTCTATCGCATCTTCGACTCCGAGCAAAATTA
CTCGATCAAAACAAGAGTTTCGGCCATTCGCATCTTGAAGCCACTTTTTG
CATCCATTGCTGCACTGATCACCAACAAAGAAGAGCAGAGCACCATGATG
AGCTCCATTTTGACAAACTTTATGGACAAGCTTATGCATTACCTGAGCAT
GAATAGCGGCGCCGTTTCCAGTTTCCTGCTTCGCACGGAAATTATCAAGG
TGTTTACCCATTTGGTCAATGAGATGCCAAAGTACATCAACCCCTTTATG
GACCGTGTTCTGCCCATTGTCTGGCAGCTACTCACACAAATAGCCGAGAC
TTACGTGAAGGTGTCGGTGAATCAGACTGAGACAAGTCCGCTGGCCAGCG
GCGACAGCGAGGAGGATGACGAGCAGACCAATTTCCAATCACTGATCATC
CAGATCCTTGAGTTCATCAACTGCATACTGACATGCAACAAACTACGTGG
CAGCATCAAAAATGTGCTGGCCGACCTCATATACATAACCATTGTTTACA
TTCAGCTGAGCGAGGAGCAGTTGGAGGACTGGCATGATGATCCGGAGAAG
TTCGTGGATGATGAGGATGATGGCGGTGTGGAGCTCACGGTGCGCATGTG
CGGCCGTGATGTTCTCCTGGCTATTAACGACGAATTCGGAGCCAACGCAA
TTCAGCCATTGCAGGAGGCATTGGGCAGGCACTTTAGTGTGGCTGATGCA
GAAAAAGCGGCCAACAATCCCAACTGGTGGAAGATCCAGGAGGCCTGCAT
GGATGCCGTGCATGCTTTCCGCGACGTCATCCTCGCCGGCGACTCTACGT
TTGACCTCCTCAACTACTTGACCATAGTTCGGAATTTGCTTGTGCATCAA
GAATCTCCACCTCTTGTTGGTCGTGCCCTTTGGACGTTGAGCATCTACTC
CAAGTCGGACCTATACAATCCGCAGATGTTGACCGAGATTCTTGATGTCA
CGCTGTGCAGCCTGTCGCCGGAGAAGTCACACATCCTTAGAATCAGCGCA
GTGCGCACCCTGAATGGATTCCTGCAGGCGAACGAAACAATCGATGGAGA
GAAGCGAACTTTGTTGGTCTCAAAGCTGCCGGGTTTCCTAGACGGAATTA
TGGCTTTAGTGCCGGGATCCAAGGCAGCAGTCTTAGCACTGCTAATGGAA
GCCCTAACTTTCATGGTTAAATTCGATGCTGAGTTTGCCTTTGCTAGCCA
GGCAAAGATTACGCCGCTAGCCATCGCTGTATTCCTGAAATACACTGAAG
ATCCGTATGTGCTTGAAACAGTCCAGGATCTCATCAAAGCTCTGTGCCAG
CGCAAGGAGTGCCTGGGACCGCTACAGGAGAAGTTTATTCCAACGATTGT
TAGCATCCTGGGGCTGACAGGAGCTGCTTCCACGGAAAAGCAGGATATTG
CCCTAGACGTCCTTAACACAATCGTGCGCTACACGGAGCCGCCGCTGAAC
AATTCCCTGTTAGAGACCGCTTTTCCCGCCATTATAAACTGCGTTCTACA
CACGGACGACCATGCTGTCATGGTAGCTGGGGGCGAGTGCCTGCGCAGCT
TTATCAATGTCTCCCCGGAACAAATATGCAGCTACAAGAACGGCGAGGGC
ATCAACTGCATCATGCAAGTGGTGGCCACTGTTCTTCTGAATCCGATGAA
CAGCGAAATGACTGCGGCGGGCCAAATTGGACGTCTTGTTATCACTATTA
TCACCAAGATGGGAAGCATGCTCGGCCAGAATGTGGACATGCTGCTGAAG
GCTGTGATAAGCAAAATGCAGAACCTCGAGTGCCTAAAAGTGATAATGAA
TCTTGTGTTGATCTTCGCCCATTTGTTCCTCACGCAAATGGACGCCGTAC
TCAACTTTCTGTCCACCGTTCCCGGACCCAACGGGGAGCCAGCGATGCAG
TTTGTACTCACAAACTGGCTCTCCCGCCAGAACTCCTTTTTCGGAAACTA
TGAGCGAAAGGTCACCACCATGGCTCTGTGCAAGCTGTTCGAGTATGGTG
TTGCCACTCAGGACAACCGTTTGACCACAATAACATTCAAAGAACTGGTG
GACGACCCCACCGACACGCGCAGACGTACTCGATCCGTGGCAGCTACAAC
CCAGAAGTGGGTAACAATTCCGGCTCTCGTCAAGATCTTCAAGGTTTTGA
TCTCCGAGTACCAGCACTTCCAGGAGGGCAAGAGCGACGAACCTCTTACG
GACAGCGAAGAGGATGGCGATGATGAGGATGCGCCCGGAAATCCGGACAA
GCCGCGTTACATATCCGATCTGTTCGAATCTGACGAGGATAACGCCGAGG
ACGAACAACTGTTGCAAGAGCTGCTGAAGGAAACCAACTACCAGGGCGAC
ATAGCCGACAACCTGCAGAAGTTCCTTACCACCTTCACGCAGAACGAACA
CTTTCCCACTTTCTATGAACACCTCACCGAGGGTGAACGCCTCATCCTGC
TCAGCAAGGTCCAGCAGAAGTAGAAGCTTTCTAGACCAT
BS03258.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:47:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ranbp9-RD | 3057 | CG5252-PD | 1..3057 | 17..3073 | 15285 | 100 | Plus |
Ranbp9-RA | 3057 | CG5252-PA | 1..3057 | 17..3073 | 15285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:47:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ranbp9-RD | 3243 | CG5252-RD | 105..3161 | 17..3073 | 15285 | 100 | Plus |
Ranbp9-RA | 3311 | CG5252-RA | 173..3229 | 17..3073 | 15285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11414702..11415492 | 1772..2562 | 3955 | 100 | Plus |
3R | 32079331 | 3R | 11412913..11413559 | 154..800 | 3235 | 100 | Plus |
3R | 32079331 | 3R | 11414090..11414642 | 1219..1771 | 2765 | 100 | Plus |
3R | 32079331 | 3R | 11415546..11416060 | 2559..3073 | 2575 | 100 | Plus |
3R | 32079331 | 3R | 11413613..11414033 | 800..1220 | 2105 | 100 | Plus |
3R | 32079331 | 3R | 11412694..11412833 | 17..156 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:47:14 has no hits.
BS03258.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:07 Download gff for
BS03258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ranbp9-RA | 1..3057 | 17..3073 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:24 Download gff for
BS03258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ranbp9-RA | 173..3229 | 17..3073 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:02 Download gff for
BS03258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ranbp9-RA | 173..3229 | 17..3073 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:04:08 Download gff for
BS03258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ranbp9-RA | 171..3229 | 14..3073 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:47 Download gff for
BS03258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ranbp9-RA | 173..3229 | 17..3073 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:47 Download gff for
BS03258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11412694..11412832 | 17..155 | 100 | -> | Plus |
3R | 11412915..11413559 | 156..800 | 100 | -> | Plus |
3R | 11413614..11414032 | 801..1219 | 100 | -> | Plus |
3R | 11414091..11414642 | 1220..1771 | 100 | -> | Plus |
3R | 11414702..11415490 | 1772..2560 | 100 | -> | Plus |
3R | 11415548..11416060 | 2561..3073 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:02 Download gff for
BS03258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7238416..7238554 | 17..155 | 100 | -> | Plus |
arm_3R | 7238637..7239281 | 156..800 | 100 | -> | Plus |
arm_3R | 7239336..7239754 | 801..1219 | 100 | -> | Plus |
arm_3R | 7239813..7240364 | 1220..1771 | 100 | -> | Plus |
arm_3R | 7240424..7241212 | 1772..2560 | 100 | -> | Plus |
arm_3R | 7241270..7241782 | 2561..3073 | 100 | | Plus |
BS03258.pep Sequence
Translation from 16 to 3072
> BS03258.pep
MSLQFQNDCGDSVKQAIIEELQNLLSSDTGVLQQTEKRIKQLEYTEGYGV
YLSEIIMNQAHELPLRQIAIVMLTRYVENHWTDDDDVKRKANGCMASEQA
KRTIRNILPNGLYDPNSKIRSSVAHTISTIAATDYPHCWAELFDIIVKCL
GGNEDSIHGAMQVLQDFSYDVEQIKELGPVVIPEVYRIFDSEQNYSIKTR
VSAIRILKPLFASIAALITNKEEQSTMMSSILTNFMDKLMHYLSMNSGAV
SSFLLRTEIIKVFTHLVNEMPKYINPFMDRVLPIVWQLLTQIAETYVKVS
VNQTETSPLASGDSEEDDEQTNFQSLIIQILEFINCILTCNKLRGSIKNV
LADLIYITIVYIQLSEEQLEDWHDDPEKFVDDEDDGGVELTVRMCGRDVL
LAINDEFGANAIQPLQEALGRHFSVADAEKAANNPNWWKIQEACMDAVHA
FRDVILAGDSTFDLLNYLTIVRNLLVHQESPPLVGRALWTLSIYSKSDLY
NPQMLTEILDVTLCSLSPEKSHILRISAVRTLNGFLQANETIDGEKRTLL
VSKLPGFLDGIMALVPGSKAAVLALLMEALTFMVKFDAEFAFASQAKITP
LAIAVFLKYTEDPYVLETVQDLIKALCQRKECLGPLQEKFIPTIVSILGL
TGAASTEKQDIALDVLNTIVRYTEPPLNNSLLETAFPAIINCVLHTDDHA
VMVAGGECLRSFINVSPEQICSYKNGEGINCIMQVVATVLLNPMNSEMTA
AGQIGRLVITIITKMGSMLGQNVDMLLKAVISKMQNLECLKVIMNLVLIF
AHLFLTQMDAVLNFLSTVPGPNGEPAMQFVLTNWLSRQNSFFGNYERKVT
TMALCKLFEYGVATQDNRLTTITFKELVDDPTDTRRRTRSVAATTQKWVT
IPALVKIFKVLISEYQHFQEGKSDEPLTDSEEDGDDEDAPGNPDKPRYIS
DLFESDEDNAEDEQLLQELLKETNYQGDIADNLQKFLTTFTQNEHFPTFY
EHLTEGERLILLSKVQQK*
BS03258.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:29:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ranbp9-PD | 1018 | CG5252-PD | 1..1018 | 1..1018 | 5206 | 100 | Plus |
Ranbp9-PA | 1018 | CG5252-PA | 1..1018 | 1..1018 | 5206 | 100 | Plus |