Clone BS03258 Report

Search the DGRC for BS03258

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:32
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptRanbp9-RA
Protein status:BS03258.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03258.3prime Sequence

876 bp (808 high quality bases) assembled on 2005-11-30

> BS03258.3prime
ATGGTCTAGAAAGCTTCTACTTCTGCTGGACCTTGCTGAGCAGGATGAGG
CGTTCACCCTCGGTGAGGTGTTCATAGAAAGTGGGAAAGTGTTCGTTCTG
CGTGAAGGTGGTAAGGAACTTCTGCAGGTTGTCGGCTATGTCGCCCTGGT
AGTTGGTTTCCTTCAGCAGCTCTTGCAACAGTTGTTCGTCCTCGGCGTTA
TCCTCGTCAGATTCGAACAGATCGGATATGTAACGCGGCTTGTCCGGATT
TCCGGGCGCATCCTCATCATCGCCATCCTCTTCGCTGTCCGTAAGAGGTT
CGTCGCTCTTGCCCTCCTGGAAGTGCTGGTACTCGGAGATCAAAACCTTG
AAGATCTTGACGAGAGCCGGAATTGTTACCCACTTCTGGGTTGTAGCTGC
CACGGATCGAGTACGTCTGCGCGTGTCGGTGGGGTCGTCCACCAGTTCTT
TGAATGTTATTGTGGTCAAACGGTTGTCCTGAGTGGCAACACCATACTCG
AACAGCTTGCACAGAGCCATGGTGGTGACCTTTCGCTCATAGTTTCCGAA
AAAGGAGTTCTGGCGGGAGAGCCAGTTTGTGAGTACAAACTGCATCGCTG
GCTCCCCGTTGGGTCCGGGAACGGTGGACAGAAAGTTGAGTACGGCGTCC
ATTTGCGTGAGGAACAAATGGGCGAAGATCAACACAAGATTCATTATCAC
TTTTAGGCACTCGAGGTTCTGCATTTTGCTTATCACAGCCTTCAGCAGCA
TGTCCACATTCTGGCCGAGCATGCTTCCCATCTTGGTGATAATAGTGATA
ACAAGACGTCCCATTTGGCCCGCCGCAGTCATTTCGCTGTTCATCGGATT
CAGAAGAACAGTGGGCACCACTTGCA

BS03258.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5252-PA 3057 Ranbp9-RA 2198..3057 876..17 4250 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
Ranbp9-RD 3243 CG5252-RD 2302..3161 876..17 4270 99.8 Minus
Ranbp9-RA 3311 CG5252-RA 2370..3229 876..17 4270 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11415546..11416060 531..17 2575 100 Minus
3R 32079331 3R 11415144..11415492 876..528 1715 99.4 Minus
Blast to na_te.dros performed on 2015-02-12 00:13:20 has no hits.

BS03258.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:22:34 Download gff for BS03258.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5252-PA 2199..3057 17..875 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:36:10 Download gff for BS03258.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5252-PA 2199..3057 17..875 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:02:05 Download gff for BS03258.3prime
Subject Subject Range Query Range Percent Splice Strand
Ranbp9-RA 2371..3229 17..875 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:02:03 Download gff for BS03258.3prime
Subject Subject Range Query Range Percent Splice Strand
Ranbp9-RA 2371..3229 17..875 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:02:03 Download gff for BS03258.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11415145..11415490 530..875 99 -> Minus
3R 11415548..11416060 17..529 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:02:05 Download gff for BS03258.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7240867..7241212 530..875 99 -> Minus
arm_3R 7241270..7241782 17..529 100   Minus

BS03258.5prime Sequence

848 bp (795 high quality bases) assembled on 2005-11-30

> BS03258.5prime
GAAGTTATCAGTCGACATGTCGCTGCAATTCCAAAACGACTGCGGGGACT
CCGTTAAGCAAGCCATCATCGAGGAGCTGCAGAACCTACTTAGCTCGGAC
ACAGGAGTCCTGCAGCAGACAGAAAAGAGGATCAAGCAGCTGGAGTACAC
GGAAGGCTATGGCGTCTACCTGTCCGAGATCATTATGAACCAGGCGCACG
AGCTGCCACTCCGTCAAATCGCGATCGTGATGCTCACTCGTTACGTGGAG
AACCACTGGACGGATGACGATGATGTTAAAAGGAAAGCCAACGGTTGTAT
GGCCAGCGAGCAGGCCAAGCGAACCATACGAAACATTCTGCCAAACGGAC
TGTATGATCCCAATTCAAAGATACGCTCCTCAGTCGCGCATACCATCTCC
ACCATAGCCGCCACGGATTACCCACATTGTTGGGCGGAGCTGTTCGACAT
CATTGTCAAATGCCTGGGCGGCAATGAGGATTCCATACACGGTGCCATGC
AGGTGCTGCAGGATTTCAGCTACGACGTGGAGCAAATCAAGGAACTGGGT
CCAGTAGTCATACCCGAAGTCTATCGCATCTTCGACTCCGAGCAAAATTA
CTCGATCAAAACAAGAGTTTCGGCCATTCGCATCTTGAAGCCACTTTTTG
CATCCATTGCTGCACTGATCACCAACAAAGAAGAGCAGAGCACCATGATG
AGCTCCATTTTGACAAACTTTATGGACAAGCTTATGCATTACCTGAGCAT
GAATAGCGGCGCCGTTTCCAGTTTCCTGCTTCGCACGGAAATTATCAAGG
TGTTTACCCATTTGGTCAATGAGATGCCAAAGTACATCAACCCCTTTA

BS03258.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5252-PA 3057 Ranbp9-RA 1..832 17..848 4160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:31:33
Subject Length Description Subject Range Query Range Score Percent Strand
Ranbp9-RD 3243 CG5252-RD 105..936 17..848 4160 100 Plus
Ranbp9-RA 3311 CG5252-RA 173..1004 17..848 4160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11412913..11413559 154..800 3235 100 Plus
3R 32079331 3R 11412694..11412833 17..156 700 100 Plus
3R 32079331 3R 11413613..11413661 800..848 245 100 Plus
Blast to na_te.dros performed on 2015-02-10 02:31:30 has no hits.

BS03258.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:22:35 Download gff for BS03258.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5252-PA 1..831 17..847 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:36:11 Download gff for BS03258.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5252-PA 1..831 17..847 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:41:56 Download gff for BS03258.5prime
Subject Subject Range Query Range Percent Splice Strand
Ranbp9-RA 171..1003 14..847 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:08:58 Download gff for BS03258.5prime
Subject Subject Range Query Range Percent Splice Strand
Ranbp9-RA 171..1003 14..847 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:08:58 Download gff for BS03258.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11412692..11412832 14..155 99 -> Plus
3R 11412915..11413559 156..800 100 -> Plus
3R 11413614..11413660 801..847 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:41:56 Download gff for BS03258.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7238414..7238554 14..155 99 -> Plus
arm_3R 7238637..7239281 156..800 100 -> Plus
arm_3R 7239336..7239382 801..847 100   Plus

BS03258.complete Sequence

3089 bp assembled on 2008-01-02

GenBank Submission: FJ634706

> BS03258.complete
GAAGTTATCAGTCGACATGTCGCTGCAATTCCAAAACGACTGCGGGGACT
CCGTTAAGCAAGCCATCATCGAGGAGCTGCAGAACCTACTTAGCTCGGAC
ACAGGAGTCCTGCAGCAGACAGAAAAGAGGATCAAGCAGCTGGAGTACAC
GGAAGGCTATGGCGTCTACCTGTCCGAGATCATTATGAACCAGGCGCACG
AGCTGCCACTCCGTCAAATCGCGATCGTGATGCTCACTCGTTACGTGGAG
AACCACTGGACGGATGACGATGATGTTAAAAGGAAAGCCAACGGTTGTAT
GGCCAGCGAGCAGGCCAAGCGAACCATACGAAACATTCTGCCAAACGGAC
TGTATGATCCCAATTCAAAGATACGCTCCTCAGTCGCGCATACCATCTCC
ACCATAGCCGCCACGGATTACCCACATTGTTGGGCGGAGCTGTTCGACAT
CATTGTCAAATGCCTGGGCGGCAATGAGGATTCCATACACGGTGCCATGC
AGGTGCTGCAGGATTTCAGCTACGACGTGGAGCAAATCAAGGAACTGGGT
CCAGTAGTCATACCCGAAGTCTATCGCATCTTCGACTCCGAGCAAAATTA
CTCGATCAAAACAAGAGTTTCGGCCATTCGCATCTTGAAGCCACTTTTTG
CATCCATTGCTGCACTGATCACCAACAAAGAAGAGCAGAGCACCATGATG
AGCTCCATTTTGACAAACTTTATGGACAAGCTTATGCATTACCTGAGCAT
GAATAGCGGCGCCGTTTCCAGTTTCCTGCTTCGCACGGAAATTATCAAGG
TGTTTACCCATTTGGTCAATGAGATGCCAAAGTACATCAACCCCTTTATG
GACCGTGTTCTGCCCATTGTCTGGCAGCTACTCACACAAATAGCCGAGAC
TTACGTGAAGGTGTCGGTGAATCAGACTGAGACAAGTCCGCTGGCCAGCG
GCGACAGCGAGGAGGATGACGAGCAGACCAATTTCCAATCACTGATCATC
CAGATCCTTGAGTTCATCAACTGCATACTGACATGCAACAAACTACGTGG
CAGCATCAAAAATGTGCTGGCCGACCTCATATACATAACCATTGTTTACA
TTCAGCTGAGCGAGGAGCAGTTGGAGGACTGGCATGATGATCCGGAGAAG
TTCGTGGATGATGAGGATGATGGCGGTGTGGAGCTCACGGTGCGCATGTG
CGGCCGTGATGTTCTCCTGGCTATTAACGACGAATTCGGAGCCAACGCAA
TTCAGCCATTGCAGGAGGCATTGGGCAGGCACTTTAGTGTGGCTGATGCA
GAAAAAGCGGCCAACAATCCCAACTGGTGGAAGATCCAGGAGGCCTGCAT
GGATGCCGTGCATGCTTTCCGCGACGTCATCCTCGCCGGCGACTCTACGT
TTGACCTCCTCAACTACTTGACCATAGTTCGGAATTTGCTTGTGCATCAA
GAATCTCCACCTCTTGTTGGTCGTGCCCTTTGGACGTTGAGCATCTACTC
CAAGTCGGACCTATACAATCCGCAGATGTTGACCGAGATTCTTGATGTCA
CGCTGTGCAGCCTGTCGCCGGAGAAGTCACACATCCTTAGAATCAGCGCA
GTGCGCACCCTGAATGGATTCCTGCAGGCGAACGAAACAATCGATGGAGA
GAAGCGAACTTTGTTGGTCTCAAAGCTGCCGGGTTTCCTAGACGGAATTA
TGGCTTTAGTGCCGGGATCCAAGGCAGCAGTCTTAGCACTGCTAATGGAA
GCCCTAACTTTCATGGTTAAATTCGATGCTGAGTTTGCCTTTGCTAGCCA
GGCAAAGATTACGCCGCTAGCCATCGCTGTATTCCTGAAATACACTGAAG
ATCCGTATGTGCTTGAAACAGTCCAGGATCTCATCAAAGCTCTGTGCCAG
CGCAAGGAGTGCCTGGGACCGCTACAGGAGAAGTTTATTCCAACGATTGT
TAGCATCCTGGGGCTGACAGGAGCTGCTTCCACGGAAAAGCAGGATATTG
CCCTAGACGTCCTTAACACAATCGTGCGCTACACGGAGCCGCCGCTGAAC
AATTCCCTGTTAGAGACCGCTTTTCCCGCCATTATAAACTGCGTTCTACA
CACGGACGACCATGCTGTCATGGTAGCTGGGGGCGAGTGCCTGCGCAGCT
TTATCAATGTCTCCCCGGAACAAATATGCAGCTACAAGAACGGCGAGGGC
ATCAACTGCATCATGCAAGTGGTGGCCACTGTTCTTCTGAATCCGATGAA
CAGCGAAATGACTGCGGCGGGCCAAATTGGACGTCTTGTTATCACTATTA
TCACCAAGATGGGAAGCATGCTCGGCCAGAATGTGGACATGCTGCTGAAG
GCTGTGATAAGCAAAATGCAGAACCTCGAGTGCCTAAAAGTGATAATGAA
TCTTGTGTTGATCTTCGCCCATTTGTTCCTCACGCAAATGGACGCCGTAC
TCAACTTTCTGTCCACCGTTCCCGGACCCAACGGGGAGCCAGCGATGCAG
TTTGTACTCACAAACTGGCTCTCCCGCCAGAACTCCTTTTTCGGAAACTA
TGAGCGAAAGGTCACCACCATGGCTCTGTGCAAGCTGTTCGAGTATGGTG
TTGCCACTCAGGACAACCGTTTGACCACAATAACATTCAAAGAACTGGTG
GACGACCCCACCGACACGCGCAGACGTACTCGATCCGTGGCAGCTACAAC
CCAGAAGTGGGTAACAATTCCGGCTCTCGTCAAGATCTTCAAGGTTTTGA
TCTCCGAGTACCAGCACTTCCAGGAGGGCAAGAGCGACGAACCTCTTACG
GACAGCGAAGAGGATGGCGATGATGAGGATGCGCCCGGAAATCCGGACAA
GCCGCGTTACATATCCGATCTGTTCGAATCTGACGAGGATAACGCCGAGG
ACGAACAACTGTTGCAAGAGCTGCTGAAGGAAACCAACTACCAGGGCGAC
ATAGCCGACAACCTGCAGAAGTTCCTTACCACCTTCACGCAGAACGAACA
CTTTCCCACTTTCTATGAACACCTCACCGAGGGTGAACGCCTCATCCTGC
TCAGCAAGGTCCAGCAGAAGTAGAAGCTTTCTAGACCAT

BS03258.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
Ranbp9-RD 3057 CG5252-PD 1..3057 17..3073 15285 100 Plus
Ranbp9-RA 3057 CG5252-PA 1..3057 17..3073 15285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
Ranbp9-RD 3243 CG5252-RD 105..3161 17..3073 15285 100 Plus
Ranbp9-RA 3311 CG5252-RA 173..3229 17..3073 15285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11414702..11415492 1772..2562 3955 100 Plus
3R 32079331 3R 11412913..11413559 154..800 3235 100 Plus
3R 32079331 3R 11414090..11414642 1219..1771 2765 100 Plus
3R 32079331 3R 11415546..11416060 2559..3073 2575 100 Plus
3R 32079331 3R 11413613..11414033 800..1220 2105 100 Plus
3R 32079331 3R 11412694..11412833 17..156 700 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:47:14 has no hits.

BS03258.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:07 Download gff for BS03258.complete
Subject Subject Range Query Range Percent Splice Strand
Ranbp9-RA 1..3057 17..3073 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:24 Download gff for BS03258.complete
Subject Subject Range Query Range Percent Splice Strand
Ranbp9-RA 173..3229 17..3073 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:02 Download gff for BS03258.complete
Subject Subject Range Query Range Percent Splice Strand
Ranbp9-RA 173..3229 17..3073 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:04:08 Download gff for BS03258.complete
Subject Subject Range Query Range Percent Splice Strand
Ranbp9-RA 171..3229 14..3073 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:47 Download gff for BS03258.complete
Subject Subject Range Query Range Percent Splice Strand
Ranbp9-RA 173..3229 17..3073 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:47 Download gff for BS03258.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11412694..11412832 17..155 100 -> Plus
3R 11412915..11413559 156..800 100 -> Plus
3R 11413614..11414032 801..1219 100 -> Plus
3R 11414091..11414642 1220..1771 100 -> Plus
3R 11414702..11415490 1772..2560 100 -> Plus
3R 11415548..11416060 2561..3073 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:02 Download gff for BS03258.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7238416..7238554 17..155 100 -> Plus
arm_3R 7238637..7239281 156..800 100 -> Plus
arm_3R 7239336..7239754 801..1219 100 -> Plus
arm_3R 7239813..7240364 1220..1771 100 -> Plus
arm_3R 7240424..7241212 1772..2560 100 -> Plus
arm_3R 7241270..7241782 2561..3073 100   Plus

BS03258.pep Sequence

Translation from 16 to 3072

> BS03258.pep
MSLQFQNDCGDSVKQAIIEELQNLLSSDTGVLQQTEKRIKQLEYTEGYGV
YLSEIIMNQAHELPLRQIAIVMLTRYVENHWTDDDDVKRKANGCMASEQA
KRTIRNILPNGLYDPNSKIRSSVAHTISTIAATDYPHCWAELFDIIVKCL
GGNEDSIHGAMQVLQDFSYDVEQIKELGPVVIPEVYRIFDSEQNYSIKTR
VSAIRILKPLFASIAALITNKEEQSTMMSSILTNFMDKLMHYLSMNSGAV
SSFLLRTEIIKVFTHLVNEMPKYINPFMDRVLPIVWQLLTQIAETYVKVS
VNQTETSPLASGDSEEDDEQTNFQSLIIQILEFINCILTCNKLRGSIKNV
LADLIYITIVYIQLSEEQLEDWHDDPEKFVDDEDDGGVELTVRMCGRDVL
LAINDEFGANAIQPLQEALGRHFSVADAEKAANNPNWWKIQEACMDAVHA
FRDVILAGDSTFDLLNYLTIVRNLLVHQESPPLVGRALWTLSIYSKSDLY
NPQMLTEILDVTLCSLSPEKSHILRISAVRTLNGFLQANETIDGEKRTLL
VSKLPGFLDGIMALVPGSKAAVLALLMEALTFMVKFDAEFAFASQAKITP
LAIAVFLKYTEDPYVLETVQDLIKALCQRKECLGPLQEKFIPTIVSILGL
TGAASTEKQDIALDVLNTIVRYTEPPLNNSLLETAFPAIINCVLHTDDHA
VMVAGGECLRSFINVSPEQICSYKNGEGINCIMQVVATVLLNPMNSEMTA
AGQIGRLVITIITKMGSMLGQNVDMLLKAVISKMQNLECLKVIMNLVLIF
AHLFLTQMDAVLNFLSTVPGPNGEPAMQFVLTNWLSRQNSFFGNYERKVT
TMALCKLFEYGVATQDNRLTTITFKELVDDPTDTRRRTRSVAATTQKWVT
IPALVKIFKVLISEYQHFQEGKSDEPLTDSEEDGDDEDAPGNPDKPRYIS
DLFESDEDNAEDEQLLQELLKETNYQGDIADNLQKFLTTFTQNEHFPTFY
EHLTEGERLILLSKVQQK*

BS03258.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:29:17
Subject Length Description Subject Range Query Range Score Percent Strand
Ranbp9-PD 1018 CG5252-PD 1..1018 1..1018 5206 100 Plus
Ranbp9-PA 1018 CG5252-PA 1..1018 1..1018 5206 100 Plus