Clone Sequence Records
BS03266.3prime Sequence
864 bp (774 high quality bases) assembled on 2005-11-30
> BS03266.3prime
ATGGTCTAGAAAGCTTTTAATAAGCCCATAGCTTTATAACTTTGTCCTTG
CCACCAGAGGCAACTCTAGAGCCATCGGGCGCCCAGTCCACTCCGAACAC
CTCATCCGCATGTCCAGGCAGCTCCTGTGCCAGTTTCTTCGTCTGCACAC
TCCATACTTTTAGAGTTGAGTCTTTGCTGCCGGAAACAATCAAGCGGGAG
TCCGCGGACCAGGCAACCGTGTAAACAGCCTGCACATGACCCCGGAAGGT
GGCCATGTACTGACCATCGCTGGCTCGCCACAGACGCACTGACTTGTCAA
ATGAAGCAGACGCAATTAGCTTTACATCCGGCGAATATTTCACATCGTTG
ACCACGTTCTGGTGCCCTGTCATGCGCTCAACGCACTTGTTCTGGTTGTT
CCGCCACAGATAGAGGGTGTTGTCATCCGAACAGGAAACCAGCGACTCCA
CCTCGTCAGGGCACACGGCCTGGTAGCGCTTCAAGGCAGATTCCTGCAAT
TCCTCAGTGCTCAAACTGAGGTGGCTCTTGGAGCGATCCTTCACCGGATG
GAATGGACCAGTGCGCAGGACGTAATCGGTGCTCAGCGCAATGTTGTTTA
CCCAGTGAGCGTGGCCAGAGAACGTCCGGCACAAGATTCCATCAGCTGCT
CGCCACATCTTCACTGTGCGATCTTTGGAGGATGTATAAATAAGGCCCGC
TCCACCCCATCTCACTGCTGTCACAGCATTTGTGTGTCCGGCAATGTTCA
TAAGGCACTGGCCCAATTTTACGTCCCAAATCCGGCAGTCCCCGTCTCCA
CTGGCGGAAGCAAGTTTCCTGCACTCCGGATCGCGATGATACGGTTCCCA
GGCGAGGCAGTTGA
BS03266.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:29:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2863-PA | 1467 | Nle-RA | 620..1467 | 864..17 | 4165 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:42:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nle-RA | 1584 | CG2863-RA | 677..1524 | 864..17 | 4195 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:42:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 567089..567445 | 508..864 | 1755 | 99.4 | Plus |
2L | 23513712 | 2L | 566680..567030 | 157..507 | 1740 | 99.7 | Plus |
2L | 23513712 | 2L | 566498..566626 | 30..158 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:42:48 has no hits.
BS03266.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:22:44 Download gff for
BS03266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2863-PA | 621..1467 | 17..863 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:36:24 Download gff for
BS03266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2863-PA | 621..1467 | 17..863 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:50:08 Download gff for
BS03266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nle-RA | 678..1524 | 17..863 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:36:50 Download gff for
BS03266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nle-RA | 678..1524 | 17..863 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:36:50 Download gff for
BS03266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 566680..567030 | 157..507 | 99 | <- | Plus |
2L | 566498..566624 | 30..156 | 100 | <- | Plus |
2L | 567089..567444 | 508..863 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:50:08 Download gff for
BS03266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 566498..566624 | 30..156 | 100 | <- | Plus |
arm_2L | 566680..567030 | 157..507 | 99 | <- | Plus |
arm_2L | 567089..567444 | 508..863 | 99 | | Plus |
BS03266.5prime Sequence
822 bp (767 high quality bases) assembled on 2005-11-29
> BS03266.5prime
GAAGTTATCAGTCGACATGTTGGCCAAAAAACAGAAAATGCAGGAGACGG
ACACGGAGCAAGAGGCCACGCCACATACGATACAGGCGCGCCTCGTTTCG
GACACGGGCGAGGAAGCCGGCCCGCCAATCGACCTGCCGGCAGGAATCAC
TACCCAGCAATTGGGACTGATTTGCAACGCGCTGCTGAAAAACGAGGAAG
CCACTCCATATTTGTTTTTCGTGGGCGAGGATGAGATCAAGAAGAGCCTG
GAGGACACGTTGGACTTGGCGTCAGTGGACACCGAAAACGTGATCGATAT
TGTGTATCAGCCACAGGCGGTTTTCAAAGTGCGCCCAGTGACAAGATGCA
CGAGTTCCATGCCGGGACACGCCGAGGCTGTGGTTTCGCTGAATTTCAGC
CCGGATGGTGCTCATCTCGCCAGTGGAAGTGGCGACACCACAGTGCGATT
GTGGGATCTTAACACAGAGACACCGCACTTCACCTGCACAGGTCATAAGC
AGTGGGTTCTGTGCGTATCCTGGGCTCCGGATGGCAAACGGTTGGCCAGC
GGTTGCAAAGCGGGCTCTATAATCATCTGGGACCCGGAGACGGGTCAGCA
GAAGGGGCGACCATTGAGTGGGCACAAGAAACACATCAACTGCCTCGCCT
GGGAACCGTATCATCGCGATCCGGAGTGCAGGAAACTTGCTTCCGCCAGT
GGAGACGGGGACTGCCGGATTTGGGACGTAAAATTGGGCCAGTGCCTTAT
GAACATTGCCGGACACACAAATGCTGTGACAGCAGTGAGATGGGGTGGAG
CGGGCCTTATTTATACATCCTC
BS03266.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:29:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2863-PA | 1467 | Nle-RA | 1..806 | 17..822 | 3930 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:01:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nle-RA | 1584 | CG2863-RA | 58..863 | 17..822 | 3970 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:00:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 567259..568064 | 822..17 | 3970 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:01:00 has no hits.
BS03266.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:22:45 Download gff for
BS03266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2863-PA | 1..806 | 17..822 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:36:25 Download gff for
BS03266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2863-PA | 1..806 | 17..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:37:41 Download gff for
BS03266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nle-RA | 56..863 | 14..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:42:56 Download gff for
BS03266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nle-RA | 56..863 | 14..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:42:56 Download gff for
BS03266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 567259..568066 | 14..822 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:37:41 Download gff for
BS03266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 567259..568066 | 14..822 | 99 | | Minus |
BS03266.complete Sequence
1499 bp (1499 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634708
> BS03266.complete
GAAGTTATCAGTCGACATGTTGGCCAAAAAACAGAAAATGCAGGAGACGG
ACACGGAGCAAGAGGCCACGCCACATACGATACAGGCGCGCCTCGTTTCG
GACACGGGCGAGGAAGCCGGCCCGCCAATCGACCTGCCGGCAGGAATCAC
TACCCAGCAATTGGGACTGATTTGCAACGCGCTGCTGAAAAACGAGGAAG
CCACTCCATATTTGTTTTTCGTGGGCGAGGATGAGATCAAGAAGAGCCTG
GAGGACACGTTGGACTTGGCGTCAGTGGACACCGAAAACGTGATCGATAT
TGTGTATCAGCCACAGGCGGTTTTCAAAGTGCGCCCAGTGACAAGATGCA
CGAGTTCCATGCCGGGACACGCCGAGGCTGTGGTTTCGCTGAATTTCAGC
CCGGATGGTGCTCATCTCGCCAGTGGAAGTGGCGACACCACAGTGCGATT
GTGGGATCTTAACACAGAGACACCGCACTTCACCTGCACAGGTCATAAGC
AGTGGGTTCTGTGCGTATCCTGGGCTCCGGATGGCAAACGGTTGGCCAGC
GGTTGCAAAGCGGGCTCTATAATCATCTGGGACCCGGAGACGGGTCAGCA
GAAGGGGCGACCATTGAGTGGGCACAAGAAACACATCAACTGCCTCGCCT
GGGAACCGTATCATCGCGATCCGGAGTGCAGGAAACTTGCTTCCGCCAGT
GGAGACGGGGACTGCCGGATTTGGGACGTAAAATTGGGCCAGTGCCTTAT
GAACATTGCCGGACACACAAATGCTGTGACAGCAGTGAGATGGGGTGGAG
CGGGCCTTATTTATACATCCTCCAAAGATCGCACAGTGAAGATGTGGCGA
GCAGCTGATGGAATCTTGTGCCGGACGTTCTCTGGCCACGCTCACTGGGT
AAACAACATTGCGCTGAGCACCGATTACGTCCTGCGCACTGGTCCATTCC
ATCCGGTGAAGGATCGCTCCAAGAGCCACCTCAGTTTGAGCACTGAGGAA
TTGCAGGAATCTGCCTTGAAGCGCTACCAGGCCGTGTGCCCTGACGAGGT
GGAGTCGCTGGTTTCCTGTTCGGATGACAACACCCTCTATCTGTGGCGGA
ACAACCAGAACAAGTGCGTTGAGCGCATGACAGGGCACCAGAACGTGGTC
AACGATGTGAAATATTCGCCGGATGTAAAGCTAATTGCGTCTGCTTCATT
TGACAAGTCAGTGCGTCTGTGGCGAGCCAGCGATGGTCAGTACATGGCCA
CCTTCCGGGGTCATGTGCAGGCTGTTTACACGGTTGCCTGGTCCGCGGAC
TCCCGCTTGATTGTTTCCGGCAGCAAAGACTCAACTCTAAAAGTATGGAG
TGTGCAGACGAAGAAACTGGCACAGGAGCTGCCTGGACATGCGGATGAGG
TGTTCGGAGTGGACTGGGCGCCCGATGGCTCTAGAGTTGCCTCTGGTGGC
AAGGACAAAGTTATAAAGCTATGGGCTTATTAAAAGCTTTCTAGACCAT
BS03266.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:40:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nle-RA | 1467 | CG2863-PA | 1..1467 | 17..1483 | 7245 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:40:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nle-RA | 1584 | CG2863-RA | 58..1524 | 17..1483 | 7245 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:40:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 567089..568064 | 992..17 | 4805 | 99.5 | Minus |
2L | 23513712 | 2L | 566680..567030 | 1343..993 | 1740 | 99.7 | Minus |
2L | 23513712 | 2L | 566498..566626 | 1470..1342 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:40:20 has no hits.
BS03266.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:58 Download gff for
BS03266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nle-RA | 1..1467 | 17..1483 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:18:29 Download gff for
BS03266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nle-RA | 97..1565 | 14..1483 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:29:17 Download gff for
BS03266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nle-RA | 63..1522 | 22..1481 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:58 Download gff for
BS03266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nle-RA | 97..1565 | 14..1483 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:03 Download gff for
BS03266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nle-RA | 63..1522 | 22..1481 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:03 Download gff for
BS03266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 566490..566624 | 1344..1478 | 97 | <- | Minus |
2L | 566680..567030 | 993..1343 | 99 | <- | Minus |
2L | 567089..568059 | 22..992 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:29:17 Download gff for
BS03266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 566490..566624 | 1344..1478 | 97 | <- | Minus |
arm_2L | 566680..567030 | 993..1343 | 99 | <- | Minus |
arm_2L | 567089..568059 | 22..992 | 99 | | Minus |
BS03266.pep Sequence
Translation from 16 to 1482
> BS03266.pep
MLAKKQKMQETDTEQEATPHTIQARLVSDTGEEAGPPIDLPAGITTQQLG
LICNALLKNEEATPYLFFVGEDEIKKSLEDTLDLASVDTENVIDIVYQPQ
AVFKVRPVTRCTSSMPGHAEAVVSLNFSPDGAHLASGSGDTTVRLWDLNT
ETPHFTCTGHKQWVLCVSWAPDGKRLASGCKAGSIIIWDPETGQQKGRPL
SGHKKHINCLAWEPYHRDPECRKLASASGDGDCRIWDVKLGQCLMNIAGH
TNAVTAVRWGGAGLIYTSSKDRTVKMWRAADGILCRTFSGHAHWVNNIAL
STDYVLRTGPFHPVKDRSKSHLSLSTEELQESALKRYQAVCPDEVESLVS
CSDDNTLYLWRNNQNKCVERMTGHQNVVNDVKYSPDVKLIASASFDKSVR
LWRASDGQYMATFRGHVQAVYTVAWSADSRLIVSGSKDSTLKVWSVQTKK
LAQELPGHADEVFGVDWAPDGSRVASGGKDKVIKLWAY*
BS03266.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nle-PA | 488 | CG2863-PA | 1..488 | 1..488 | 2610 | 100 | Plus |
ebi-PA | 700 | CG4063-PA | 353..689 | 117..480 | 358 | 28.4 | Plus |
Lis-1-PG | 411 | CG8440-PG | 102..408 | 155..486 | 346 | 25.7 | Plus |
Lis-1-PF | 411 | CG8440-PF | 102..408 | 155..486 | 346 | 25.7 | Plus |
Lis-1-PB | 411 | CG8440-PB | 102..408 | 155..486 | 346 | 25.7 | Plus |
ebi-PA | 700 | CG4063-PA | 342..655 | 191..487 | 308 | 28 | Plus |
Lis-1-PG | 411 | CG8440-PG | 185..387 | 111..298 | 244 | 29.5 | Plus |
Lis-1-PF | 411 | CG8440-PF | 185..387 | 111..298 | 244 | 29.5 | Plus |