Clone BS03266 Report

Search the DGRC for BS03266

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:32
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptNle-RA
Protein status:BS03266.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03266.3prime Sequence

864 bp (774 high quality bases) assembled on 2005-11-30

> BS03266.3prime
ATGGTCTAGAAAGCTTTTAATAAGCCCATAGCTTTATAACTTTGTCCTTG
CCACCAGAGGCAACTCTAGAGCCATCGGGCGCCCAGTCCACTCCGAACAC
CTCATCCGCATGTCCAGGCAGCTCCTGTGCCAGTTTCTTCGTCTGCACAC
TCCATACTTTTAGAGTTGAGTCTTTGCTGCCGGAAACAATCAAGCGGGAG
TCCGCGGACCAGGCAACCGTGTAAACAGCCTGCACATGACCCCGGAAGGT
GGCCATGTACTGACCATCGCTGGCTCGCCACAGACGCACTGACTTGTCAA
ATGAAGCAGACGCAATTAGCTTTACATCCGGCGAATATTTCACATCGTTG
ACCACGTTCTGGTGCCCTGTCATGCGCTCAACGCACTTGTTCTGGTTGTT
CCGCCACAGATAGAGGGTGTTGTCATCCGAACAGGAAACCAGCGACTCCA
CCTCGTCAGGGCACACGGCCTGGTAGCGCTTCAAGGCAGATTCCTGCAAT
TCCTCAGTGCTCAAACTGAGGTGGCTCTTGGAGCGATCCTTCACCGGATG
GAATGGACCAGTGCGCAGGACGTAATCGGTGCTCAGCGCAATGTTGTTTA
CCCAGTGAGCGTGGCCAGAGAACGTCCGGCACAAGATTCCATCAGCTGCT
CGCCACATCTTCACTGTGCGATCTTTGGAGGATGTATAAATAAGGCCCGC
TCCACCCCATCTCACTGCTGTCACAGCATTTGTGTGTCCGGCAATGTTCA
TAAGGCACTGGCCCAATTTTACGTCCCAAATCCGGCAGTCCCCGTCTCCA
CTGGCGGAAGCAAGTTTCCTGCACTCCGGATCGCGATGATACGGTTCCCA
GGCGAGGCAGTTGA

BS03266.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:29:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG2863-PA 1467 Nle-RA 620..1467 864..17 4165 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
Nle-RA 1584 CG2863-RA 677..1524 864..17 4195 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 567089..567445 508..864 1755 99.4 Plus
2L 23513712 2L 566680..567030 157..507 1740 99.7 Plus
2L 23513712 2L 566498..566626 30..158 645 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:42:48 has no hits.

BS03266.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:22:44 Download gff for BS03266.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2863-PA 621..1467 17..863 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:36:24 Download gff for BS03266.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2863-PA 621..1467 17..863 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:50:08 Download gff for BS03266.3prime
Subject Subject Range Query Range Percent Splice Strand
Nle-RA 678..1524 17..863 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:36:50 Download gff for BS03266.3prime
Subject Subject Range Query Range Percent Splice Strand
Nle-RA 678..1524 17..863 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:36:50 Download gff for BS03266.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 566680..567030 157..507 99 <- Plus
2L 566498..566624 30..156 100 <- Plus
2L 567089..567444 508..863 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:50:08 Download gff for BS03266.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 566498..566624 30..156 100 <- Plus
arm_2L 566680..567030 157..507 99 <- Plus
arm_2L 567089..567444 508..863 99   Plus

BS03266.5prime Sequence

822 bp (767 high quality bases) assembled on 2005-11-29

> BS03266.5prime
GAAGTTATCAGTCGACATGTTGGCCAAAAAACAGAAAATGCAGGAGACGG
ACACGGAGCAAGAGGCCACGCCACATACGATACAGGCGCGCCTCGTTTCG
GACACGGGCGAGGAAGCCGGCCCGCCAATCGACCTGCCGGCAGGAATCAC
TACCCAGCAATTGGGACTGATTTGCAACGCGCTGCTGAAAAACGAGGAAG
CCACTCCATATTTGTTTTTCGTGGGCGAGGATGAGATCAAGAAGAGCCTG
GAGGACACGTTGGACTTGGCGTCAGTGGACACCGAAAACGTGATCGATAT
TGTGTATCAGCCACAGGCGGTTTTCAAAGTGCGCCCAGTGACAAGATGCA
CGAGTTCCATGCCGGGACACGCCGAGGCTGTGGTTTCGCTGAATTTCAGC
CCGGATGGTGCTCATCTCGCCAGTGGAAGTGGCGACACCACAGTGCGATT
GTGGGATCTTAACACAGAGACACCGCACTTCACCTGCACAGGTCATAAGC
AGTGGGTTCTGTGCGTATCCTGGGCTCCGGATGGCAAACGGTTGGCCAGC
GGTTGCAAAGCGGGCTCTATAATCATCTGGGACCCGGAGACGGGTCAGCA
GAAGGGGCGACCATTGAGTGGGCACAAGAAACACATCAACTGCCTCGCCT
GGGAACCGTATCATCGCGATCCGGAGTGCAGGAAACTTGCTTCCGCCAGT
GGAGACGGGGACTGCCGGATTTGGGACGTAAAATTGGGCCAGTGCCTTAT
GAACATTGCCGGACACACAAATGCTGTGACAGCAGTGAGATGGGGTGGAG
CGGGCCTTATTTATACATCCTC

BS03266.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG2863-PA 1467 Nle-RA 1..806 17..822 3930 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
Nle-RA 1584 CG2863-RA 58..863 17..822 3970 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 567259..568064 822..17 3970 99.5 Minus
Blast to na_te.dros performed on 2015-02-13 09:01:00 has no hits.

BS03266.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:22:45 Download gff for BS03266.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2863-PA 1..806 17..822 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:36:25 Download gff for BS03266.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2863-PA 1..806 17..822 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:37:41 Download gff for BS03266.5prime
Subject Subject Range Query Range Percent Splice Strand
Nle-RA 56..863 14..822 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:42:56 Download gff for BS03266.5prime
Subject Subject Range Query Range Percent Splice Strand
Nle-RA 56..863 14..822 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:42:56 Download gff for BS03266.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 567259..568066 14..822 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:37:41 Download gff for BS03266.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 567259..568066 14..822 99   Minus

BS03266.complete Sequence

1499 bp (1499 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634708

> BS03266.complete
GAAGTTATCAGTCGACATGTTGGCCAAAAAACAGAAAATGCAGGAGACGG
ACACGGAGCAAGAGGCCACGCCACATACGATACAGGCGCGCCTCGTTTCG
GACACGGGCGAGGAAGCCGGCCCGCCAATCGACCTGCCGGCAGGAATCAC
TACCCAGCAATTGGGACTGATTTGCAACGCGCTGCTGAAAAACGAGGAAG
CCACTCCATATTTGTTTTTCGTGGGCGAGGATGAGATCAAGAAGAGCCTG
GAGGACACGTTGGACTTGGCGTCAGTGGACACCGAAAACGTGATCGATAT
TGTGTATCAGCCACAGGCGGTTTTCAAAGTGCGCCCAGTGACAAGATGCA
CGAGTTCCATGCCGGGACACGCCGAGGCTGTGGTTTCGCTGAATTTCAGC
CCGGATGGTGCTCATCTCGCCAGTGGAAGTGGCGACACCACAGTGCGATT
GTGGGATCTTAACACAGAGACACCGCACTTCACCTGCACAGGTCATAAGC
AGTGGGTTCTGTGCGTATCCTGGGCTCCGGATGGCAAACGGTTGGCCAGC
GGTTGCAAAGCGGGCTCTATAATCATCTGGGACCCGGAGACGGGTCAGCA
GAAGGGGCGACCATTGAGTGGGCACAAGAAACACATCAACTGCCTCGCCT
GGGAACCGTATCATCGCGATCCGGAGTGCAGGAAACTTGCTTCCGCCAGT
GGAGACGGGGACTGCCGGATTTGGGACGTAAAATTGGGCCAGTGCCTTAT
GAACATTGCCGGACACACAAATGCTGTGACAGCAGTGAGATGGGGTGGAG
CGGGCCTTATTTATACATCCTCCAAAGATCGCACAGTGAAGATGTGGCGA
GCAGCTGATGGAATCTTGTGCCGGACGTTCTCTGGCCACGCTCACTGGGT
AAACAACATTGCGCTGAGCACCGATTACGTCCTGCGCACTGGTCCATTCC
ATCCGGTGAAGGATCGCTCCAAGAGCCACCTCAGTTTGAGCACTGAGGAA
TTGCAGGAATCTGCCTTGAAGCGCTACCAGGCCGTGTGCCCTGACGAGGT
GGAGTCGCTGGTTTCCTGTTCGGATGACAACACCCTCTATCTGTGGCGGA
ACAACCAGAACAAGTGCGTTGAGCGCATGACAGGGCACCAGAACGTGGTC
AACGATGTGAAATATTCGCCGGATGTAAAGCTAATTGCGTCTGCTTCATT
TGACAAGTCAGTGCGTCTGTGGCGAGCCAGCGATGGTCAGTACATGGCCA
CCTTCCGGGGTCATGTGCAGGCTGTTTACACGGTTGCCTGGTCCGCGGAC
TCCCGCTTGATTGTTTCCGGCAGCAAAGACTCAACTCTAAAAGTATGGAG
TGTGCAGACGAAGAAACTGGCACAGGAGCTGCCTGGACATGCGGATGAGG
TGTTCGGAGTGGACTGGGCGCCCGATGGCTCTAGAGTTGCCTCTGGTGGC
AAGGACAAAGTTATAAAGCTATGGGCTTATTAAAAGCTTTCTAGACCAT

BS03266.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
Nle-RA 1467 CG2863-PA 1..1467 17..1483 7245 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
Nle-RA 1584 CG2863-RA 58..1524 17..1483 7245 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 567089..568064 992..17 4805 99.5 Minus
2L 23513712 2L 566680..567030 1343..993 1740 99.7 Minus
2L 23513712 2L 566498..566626 1470..1342 645 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:40:20 has no hits.

BS03266.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:58 Download gff for BS03266.complete
Subject Subject Range Query Range Percent Splice Strand
Nle-RA 1..1467 17..1483 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:18:29 Download gff for BS03266.complete
Subject Subject Range Query Range Percent Splice Strand
Nle-RA 97..1565 14..1483 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:29:17 Download gff for BS03266.complete
Subject Subject Range Query Range Percent Splice Strand
Nle-RA 63..1522 22..1481 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:58 Download gff for BS03266.complete
Subject Subject Range Query Range Percent Splice Strand
Nle-RA 97..1565 14..1483 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:03 Download gff for BS03266.complete
Subject Subject Range Query Range Percent Splice Strand
Nle-RA 63..1522 22..1481 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:03 Download gff for BS03266.complete
Subject Subject Range Query Range Percent Splice Strand
2L 566490..566624 1344..1478 97 <- Minus
2L 566680..567030 993..1343 99 <- Minus
2L 567089..568059 22..992 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:29:17 Download gff for BS03266.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 566490..566624 1344..1478 97 <- Minus
arm_2L 566680..567030 993..1343 99 <- Minus
arm_2L 567089..568059 22..992 99   Minus

BS03266.pep Sequence

Translation from 16 to 1482

> BS03266.pep
MLAKKQKMQETDTEQEATPHTIQARLVSDTGEEAGPPIDLPAGITTQQLG
LICNALLKNEEATPYLFFVGEDEIKKSLEDTLDLASVDTENVIDIVYQPQ
AVFKVRPVTRCTSSMPGHAEAVVSLNFSPDGAHLASGSGDTTVRLWDLNT
ETPHFTCTGHKQWVLCVSWAPDGKRLASGCKAGSIIIWDPETGQQKGRPL
SGHKKHINCLAWEPYHRDPECRKLASASGDGDCRIWDVKLGQCLMNIAGH
TNAVTAVRWGGAGLIYTSSKDRTVKMWRAADGILCRTFSGHAHWVNNIAL
STDYVLRTGPFHPVKDRSKSHLSLSTEELQESALKRYQAVCPDEVESLVS
CSDDNTLYLWRNNQNKCVERMTGHQNVVNDVKYSPDVKLIASASFDKSVR
LWRASDGQYMATFRGHVQAVYTVAWSADSRLIVSGSKDSTLKVWSVQTKK
LAQELPGHADEVFGVDWAPDGSRVASGGKDKVIKLWAY*

BS03266.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
Nle-PA 488 CG2863-PA 1..488 1..488 2610 100 Plus
ebi-PA 700 CG4063-PA 353..689 117..480 358 28.4 Plus
Lis-1-PG 411 CG8440-PG 102..408 155..486 346 25.7 Plus
Lis-1-PF 411 CG8440-PF 102..408 155..486 346 25.7 Plus
Lis-1-PB 411 CG8440-PB 102..408 155..486 346 25.7 Plus
ebi-PA 700 CG4063-PA 342..655 191..487 308 28 Plus
Lis-1-PG 411 CG8440-PG 185..387 111..298 244 29.5 Plus
Lis-1-PF 411 CG8440-PF 185..387 111..298 244 29.5 Plus