Clone BS03269 Report

Search the DGRC for BS03269

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:32
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptCbl-RA
Protein status:BS03269.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03269.5prime Sequence

839 bp (754 high quality bases) assembled on 2005-11-29

> BS03269.5prime
GAAGTTATCAGTCGACATGGCGACGAGAGGCAGTGGAACCCGTGTGCAAT
CGCAGCCAAAGATTTTCCCATCGCTGCTTTCCAAGCTGCACGGCGCTATC
TCGGAAGCCTGCGTCTCGCAGCGTCTGTCCACCGACAAGAAGACGCTGGA
GAAGACCTGGAAGTTGATGGACAAGGTGGTCAAACTGTGCCAGCAGCCGA
AGATGAATCTTAAGAATAGTCCACCGTTTATTTTGGACATCCTGCCGGAT
ACGTACCAGCGCCTGAGATTGATCTACTCAAAGAACGAGGACCAGATGCA
CCTGCTCCATGCCAACGAGCACTTCAACGTGTTCATCAACAACCTGATGC
GAAAGTGCAAGCAGGCCATCAAGTTGTTCAAGGAGGGCAAGGAGAAGATG
TTCGACGAGAACTCCCACTACCGCCGCAATCTCACCAAGCTCAGCCTGGT
CTTCTCCCACATGCTCAGCGAACTGAAGGCCATATTCCCCAACGGTGTCT
TTGCCGGGGATCAATTTCGGATCACCAAAGCGGATGCGGCTGACTTTTGG
AAGAGCAACTTCGGTAACAGCACATTGGTTCCCTGGAAAATCTTCCGGCA
GGAGCTTAACAAAGTACATCCCATAATCTCCGGCCTGGAGGCCATGGCCC
TAAAGACCACTATCGATCTTACCTGCAACGACTTCATTTCCAACTTCGAG
TTCGACGTCTTCACACGCCTCTTCCAGCCTTGGGTGACCCTGCTACGCAA
CTGGCAGATTCTGGCCGTCACACATCGGGGCTACGTGGCGTTTCTCACAT
ACGACGAGGTGAAGGCTCGCCTACAGCGCTACATCCTCA

BS03269.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG7037-PA 1347 Cbl-RA 1..823 17..839 4090 99.8 Plus
CG7037-PB 2637 Cbl-RB 1..823 17..839 4090 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:50:00
Subject Length Description Subject Range Query Range Score Percent Strand
Cbl-RB 4902 CG7037-RB 356..1178 17..839 4100 99.9 Plus
Cbl-RA 2948 CG7037-RA 356..1178 17..839 4100 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:49:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8425309..8425862 17..570 2770 100 Plus
3L 28110227 3L 8426403..8426674 568..839 1345 99.6 Plus
Blast to na_te.dros performed on 2015-02-11 23:49:56 has no hits.

BS03269.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:22:49 Download gff for BS03269.5prime
Subject Subject Range Query Range Percent Splice Strand
Cbl-PA 1..822 17..838 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:36:30 Download gff for BS03269.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7037-PB 1..822 17..838 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:11:10 Download gff for BS03269.5prime
Subject Subject Range Query Range Percent Splice Strand
Cbl-RA 349..1177 10..838 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:16 Download gff for BS03269.5prime
Subject Subject Range Query Range Percent Splice Strand
Cbl-RA 349..1177 10..838 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:16 Download gff for BS03269.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8425302..8425862 10..570 99 -> Plus
3L 8426406..8426673 571..838 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:11:10 Download gff for BS03269.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8418402..8418962 10..570 99 -> Plus
arm_3L 8419506..8419773 571..838 99   Plus

BS03269.3prime Sequence

906 bp (783 high quality bases) assembled on 2005-11-30

> BS03269.3prime
ATGGTCTAGAAAGCTTCTATACCTCAGTGTCGTCTTCTTCCTGCTGCTGC
TGTCGCCCATTGGTGACGTTCCGGTTGTGTTGCTTGCGCGGATCGAAAGC
GTCCACAACGATTTGTTCGGTGCCCTTGATTTCGGCCCGACAGAAGGGGC
AGCCCTGTCCCTCGGAATCCACTTGCCAGGAGGTAAGGCAGGGAGTGCAC
AACAAGTGGCCACAGGGCTCGATGCGGATATCTTTGTCGTTCTCCGCACA
GATTTTGCACAGCTGAAAGGTGCTGCCCATTTCACAGTATAGTTCGTATT
GCTCTTGGGTAACGGTTATGTGGTCCTCTGTGGGACTTTGAACGGCAGAC
GACAGATCCGGATTGTACGCTTGGCCATCTGGGTACAAGTAGAAGCCCTC
TCGATGGCCATCGAGCAGCGCCTGGCACAGCGACTTGTTCTGAGGGATTG
TCTGCAGAATCTCTCCCTCGGCAGTTACGTAGCCGATGGCCCATTGGCCC
AATCGCGTGCAGGAGAGCCGGAAAACGTAGCTGCCCGCCTTGAGGATGTA
GCGCTGTAGGCGAGCCTTCACCTCGTCGTATGTGAGAAACGCCACGTAGC
CCGGATGTGTGACGGCCAGAATCTGCCAGTTGCGTAGCAGGGTCACCCAA
GGCTGGAAGAGGCGTGTGAAGACGTCGAACTCGAAGTTGGAAATGAAGTC
GTTGCAGGTAAGATCGATAGTGGTCTTTAGGGCCATGGCCTCCAGGCCGG
AGATTATGGGATGTACTTTGTTAAGCTCCTGCCGGAAGATTTTCCAGGGA
ACCAATGTGCTGTTACCGAAGTTGCTCTTCCAAAAGTCAGCCGCATCCGC
TTTGGTGATCCGAAATTGAATCCCGGCAAAGACACCGTTTGGGGAATATG
GCCTTC

BS03269.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:29:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG7037-PA 1347 Cbl-RA 475..1347 889..17 4315 99.7 Minus
CG7037-PB 2637 Cbl-RB 475..1342 889..22 4290 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
Cbl-RA 2948 CG7037-RA 814..1702 906..17 4395 99.7 Minus
Cbl-RB 4902 CG7037-RB 814..1697 906..22 4370 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:46:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8426403..8426813 812..402 2055 100 Minus
3L 28110227 3L 8427269..8427409 157..17 705 100 Minus
3L 28110227 3L 8426901..8427027 402..276 635 100 Minus
3L 28110227 3L 8427091..8427214 277..154 620 100 Minus
3L 28110227 3L 8425767..8425862 906..810 405 96.9 Minus
Blast to na_te.dros performed on 2015-02-01 08:46:16 has no hits.

BS03269.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:22:48 Download gff for BS03269.3prime
Subject Subject Range Query Range Percent Splice Strand
Cbl-PA 459..1347 17..906 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:36:29 Download gff for BS03269.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7037-PA 459..1347 17..906 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:10:35 Download gff for BS03269.3prime
Subject Subject Range Query Range Percent Splice Strand
Cbl-RA 814..1705 10..906 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:51:17 Download gff for BS03269.3prime
Subject Subject Range Query Range Percent Splice Strand
Cbl-RA 814..1705 10..906 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 11:51:17 Download gff for BS03269.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8425767..8425862 810..906 96 -> Minus
3L 8426406..8426813 402..809 100 -> Minus
3L 8426902..8427026 277..401 100 -> Minus
3L 8427092..8427213 155..276 100 -> Minus
3L 8427272..8427412 10..154 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:10:35 Download gff for BS03269.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8418867..8418962 810..906 96 -> Minus
arm_3L 8419506..8419913 402..809 100 -> Minus
arm_3L 8420002..8420126 277..401 100 -> Minus
arm_3L 8420192..8420313 155..276 100 -> Minus
arm_3L 8420372..8420512 10..154 97   Minus

BS03269.complete Sequence

1379 bp (1379 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634710

> BS03269.complete
GAAGTTATCAGTCGACATGGCGACGAGAGGCAGTGGAACCCGTGTGCAAT
CGCAGCCAAAGATTTTCCCATCGCTGCTTTCCAAGCTGCACGGCGCTATC
TCGGAAGCCTGCGTCTCGCAGCGTCTGTCCACCGACAAGAAGACGCTGGA
GAAGACCTGGAAGTTGATGGACAAGGTGGTCAAACTGTGCCAGCAGCCGA
AGATGAATCTTAAGAATAGTCCACCGTTTATTTTGGACATCCTGCCGGAT
ACGTACCAGCGCCTGAGATTGATCTACTCAAAGAACGAGGACCAGATGCA
CCTGCTCCATGCCAACGAGCACTTCAACGTGTTCATCAACAACCTGATGC
GAAAGTGCAAGCAGGCCATCAAGTTGTTCAAGGAGGGCAAGGAGAAGATG
TTCGACGAGAACTCCCACTACCGCCGCAATCTCACCAAGCTCAGCCTGGT
CTTCTCCCACATGCTCAGCGAACTGAAGGCCATATTCCCCAACGGTGTCT
TTGCCGGGGATCAATTTCGGATCACCAAAGCGGATGCGGCTGACTTTTGG
AAGAGCAACTTCGGTAACAGCACATTGGTTCCCTGGAAAATCTTCCGGCA
GGAGCTTAACAAAGTACATCCCATAATCTCCGGCCTGGAGGCCATGGCCC
TAAAGACCACTATCGATCTTACCTGCAACGACTTCATTTCCAACTTCGAG
TTCGACGTCTTCACACGCCTCTTCCAGCCTTGGGTGACCCTGCTACGCAA
CTGGCAGATTCTGGCCGTCACACATCCGGGCTACGTGGCGTTTCTCACAT
ACGACGAGGTGAAGGCTCGCCTACAGCGCTACATCCTCAAGGCGGGCAGC
TACGTTTTCCGGCTCTCCTGCACGCGATTGGGCCAATGGGCCATCGGCTA
CGTAACTGCCGAGGGAGAGATTCTGCAGACAATCCCTCAGAACAAGTCGC
TGTGCCAGGCGCTGCTCGATGGCCATCGAGAGGGCTTCTACTTGTACCCA
GATGGCCAAGCGTACAATCCGGATCTGTCGTCTGCCGTTCAAAGTCCCAC
AGAGGACCACATAACCGTTACCCAAGAGCAATACGAACTATACTGTGAAA
TGGGCAGCACCTTTCAGCTGTGCAAAATCTGTGCGGAGAACGACAAAGAT
ATCCGCATCGAGCCCTGTGGCCACTTGTTGTGCACTCCCTGCCTTACCTC
CTGGCAAGTGGATTCCGAGGGACAGGGCTGCCCCTTCTGTCGGGCCGAAA
TCAAGGGCACCGAACAAATCGTTGTGGACGCTTTCGATCCGCGCAAGCAA
CACAACCGGAACGTCACCAATGGGCGACAGCAGCAGCAGGAAGAAGACGA
CACTGAGGTATAGAAGCTTTCTAGACCAT

BS03269.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:48:18
Subject Length Description Subject Range Query Range Score Percent Strand
Cbl-RA 1347 CG7037-PA 1..1347 17..1363 6735 100 Plus
Cbl-RB 2637 CG7037-PB 1..1342 17..1358 6710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:48:20
Subject Length Description Subject Range Query Range Score Percent Strand
Cbl-RA 2948 CG7037-RA 356..1702 17..1363 6735 100 Plus
Cbl-RB 4902 CG7037-RB 356..1697 17..1358 6710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8425309..8425862 17..570 2770 100 Plus
3L 28110227 3L 8426403..8426813 568..978 2055 100 Plus
3L 28110227 3L 8427269..8427409 1223..1363 705 100 Plus
3L 28110227 3L 8426901..8427027 978..1104 635 100 Plus
3L 28110227 3L 8427091..8427214 1103..1226 620 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:48:17 has no hits.

BS03269.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:00 Download gff for BS03269.complete
Subject Subject Range Query Range Percent Splice Strand
Cbl-RA 1..1347 17..1363 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:18:33 Download gff for BS03269.complete
Subject Subject Range Query Range Percent Splice Strand
Cbl-RA 358..1714 10..1370 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:22 Download gff for BS03269.complete
Subject Subject Range Query Range Percent Splice Strand
Cbl-RA 356..1702 17..1363 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:00 Download gff for BS03269.complete
Subject Subject Range Query Range Percent Splice Strand
Cbl-RA 358..1714 10..1370 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:14 Download gff for BS03269.complete
Subject Subject Range Query Range Percent Splice Strand
Cbl-RA 356..1702 17..1363 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:14 Download gff for BS03269.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8425309..8425862 17..570 100 -> Plus
3L 8426406..8426813 571..978 100 -> Plus
3L 8426902..8427026 979..1103 100 -> Plus
3L 8427092..8427213 1104..1225 100 -> Plus
3L 8427272..8427409 1226..1363 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:22 Download gff for BS03269.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8418409..8418962 17..570 100 -> Plus
arm_3L 8419506..8419913 571..978 100 -> Plus
arm_3L 8420002..8420126 979..1103 100 -> Plus
arm_3L 8420192..8420313 1104..1225 100 -> Plus
arm_3L 8420372..8420509 1226..1363 100   Plus

BS03269.pep Sequence

Translation from 16 to 1362

> BS03269.pep
MATRGSGTRVQSQPKIFPSLLSKLHGAISEACVSQRLSTDKKTLEKTWKL
MDKVVKLCQQPKMNLKNSPPFILDILPDTYQRLRLIYSKNEDQMHLLHAN
EHFNVFINNLMRKCKQAIKLFKEGKEKMFDENSHYRRNLTKLSLVFSHML
SELKAIFPNGVFAGDQFRITKADAADFWKSNFGNSTLVPWKIFRQELNKV
HPIISGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQPWVTLLRNWQILA
VTHPGYVAFLTYDEVKARLQRYILKAGSYVFRLSCTRLGQWAIGYVTAEG
EILQTIPQNKSLCQALLDGHREGFYLYPDGQAYNPDLSSAVQSPTEDHIT
VTQEQYELYCEMGSTFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVDS
EGQGCPFCRAEIKGTEQIVVDAFDPRKQHNRNVTNGRQQQQEEDDTEV*

BS03269.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
Cbl-PA 448 CG7037-PA 1..448 1..448 2386 100 Plus
Cbl-PB 878 CG7037-PB 1..447 1..447 2382 100 Plus