Clone Sequence Records
BS03270.3prime Sequence
808 bp (744 high quality bases) assembled on 2005-11-30
> BS03270.3prime
ATGGTCTAGAAAGCTTTCATCCCATTCCGAGGTCATTCATCAGATGCTGC
CTGATCACCTGGCCCTCCTCCTCGGCCAGAAGTTGAGCTGTGACCGTATT
CACCAAGTTGAAGGCGATTCCAAAGGCGCTGAATATGCACCATACGCCCA
GGGCCAACCAGCGGAGTGGGCGTGGTCGCAGCCCACCATCCAGTTGCCGG
AGAAGCAGCAGACCCACACTAATCCCGGCCAGAGCACCGGTCATGTGAGC
GATATAGGAGACAGAGGGTCGTGTCTGCAGCTGATGCATTGCCAGTTCTC
TTGAATAGAGGGCATACCCCAAATCGCAGAAAACGAACAAAATCACAGCC
ATTAGCTGAATTACCCCGTGTCTCATTTGACCAAAGTTGAGCAAAAGACT
CGCCAGTTGGGCGGCCAGCAAGGCGTAAACTCCTCCACTGGCTCCCACCA
GAAAAACTTCCGAGTCCACCACCGAAGTTCCCAAAGAGCCAGCCAAAACT
CCGGCCATATAAATGACTCCCGTTCTCAGCGATCCATGTACCAGCTCCAA
TGGCACACCGAACAGGAGCTGAGTGAGCACATTGTAACCCAGATGGAGCC
AACTGGCGTGGAGCAGGGCATAGCTAAGGAATCTCCAGAGCTGCAGGCGC
TGGTCGGGTCGATATACCAGAAGAGAATCCTCTGGTGGATCAGCACCCAC
CCATAGAAACACGAGAACCTCAAGGAGCGTGGCGAGGATAATGAAAAAGG
GCGGAATCCACTTGAAAGGCGCGGCAGACCCTTCATGATGTTTCGCCCTG
TGATTCCC
BS03270.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:29:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1214-PA | 1026 | ru-RA | 235..1026 | 808..17 | 3960 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:37:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ru-RA | 1798 | CG1214-RA | 555..1346 | 808..17 | 3960 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:37:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1386210..1386596 | 720..334 | 1935 | 100 | Minus |
3L | 28110227 | 3L | 1386668..1386985 | 334..17 | 1590 | 100 | Minus |
3L | 28110227 | 3L | 1384751..1384842 | 808..717 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 15:37:07 has no hits.
BS03270.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:22:51 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:36:31 Download gff for
BS03270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1214-PA | 235..1026 | 17..808 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:14:36 Download gff for
BS03270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ru-RA | 555..1346 | 17..808 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:57:20 Download gff for
BS03270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ru-RA | 555..1346 | 17..808 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 18:57:20 Download gff for
BS03270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1384751..1384840 | 719..808 | 100 | -> | Minus |
3L | 1386212..1386596 | 334..718 | 100 | -> | Minus |
3L | 1386669..1386985 | 17..333 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:14:36 Download gff for
BS03270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1384751..1384840 | 719..808 | 100 | -> | Minus |
arm_3L | 1386212..1386596 | 334..718 | 100 | -> | Minus |
arm_3L | 1386669..1386985 | 17..333 | 100 | | Minus |
BS03270.5prime Sequence
882 bp (756 high quality bases) assembled on 2005-11-30
> BS03270.5prime
GAAGTTATCAGTCGACATGCTCCTGCTAAGTGGGGCACCGTCACAAGGCA
GACGCCCCAAAAATAGACCCCTCATCGGAACGGTGGAGGAGGGGGAGATG
CCGCCCAGTACCGTTCTGCAAATGCCGCCGGCTCCGTTGTCATCGAAATC
CGGACTGGTGCTGGGCGTCTGCTGTGACCAGCTGATGGCGGTGCAGCCAG
TGCAACGGGCATCCGGAGCAGCAGCAACCAAGAGCAATTCCCCGGATTGG
GGGAATCACAGGGCGAAACATCATGAAGGGTCTGCCGCGCCTTTCAAGTG
GATTCCGCCCTTTTTCATTATCCTCGCCACGCTCCTTGAGGTTCTCGTGT
TTCTATGGGTGGGTGCTGATCCACCAGAGGATTCTCTTCTGGTATATCGA
CCCGACCAGCGCCTGCAGCTCTGGAGATTCCTTAGCTATGCCCTGCTCCA
CGCCAGTTGGCTCCATCTGGGTTACAATGTGCTCACTCAGCTCCTGTTCG
GTGTGCCATTGGAGCTGGTACATGGATCGCTGAGAACGGGAGTCATTTAT
ATGGCCGGAGTTTTGGCTGGCTCTTTGGGAACTTCGGTGGTGGACTCGGA
AGTTTTTCTGGTGGGAGCCAGTGGAGGAGTTTACGCCTTGCTGGCCGCCC
AACTGGCGAGTCTTTTGCTCAACTTTGGTCAAATGAGACACGGGGTAATT
CAGCTAATGGCTGTGATTTTGTTCGTTTTCTGCGATTTGGGGTATGCCCT
CTATTCAAGAGAACTGGCAATGCATCAGCTGCAGACACGACCCTCTGTCT
CCTATATCGCTCACATGACCGGTGCTCTGGCCGGGATTAGTGTGGGTCTG
CTGCTTCTCCCGCAACTGGATGGTGGGCTGCG
BS03270.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:29:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1214-PA | 1026 | ru-RA | 1..866 | 17..882 | 4305 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:31:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ru-RA | 1798 | CG1214-RA | 321..1186 | 17..882 | 4315 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:31:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1386210..1386596 | 339..725 | 1935 | 100 | Plus |
3L | 28110227 | 3L | 1384517..1384842 | 17..342 | 1630 | 100 | Plus |
3L | 28110227 | 3L | 1386668..1386825 | 725..882 | 775 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 02:31:18 has no hits.
BS03270.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:22:52 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:36:33 Download gff for
BS03270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1214-PA | 1..866 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:41:53 Download gff for
BS03270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ru-RA | 311..1186 | 8..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:08:56 Download gff for
BS03270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ru-RA | 311..1186 | 8..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:08:56 Download gff for
BS03270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1384507..1384840 | 8..340 | 98 | -> | Plus |
3L | 1386212..1386596 | 341..725 | 100 | -> | Plus |
3L | 1386669..1386825 | 726..882 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:41:53 Download gff for
BS03270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1384507..1384840 | 8..340 | 98 | -> | Plus |
arm_3L | 1386212..1386596 | 341..725 | 100 | -> | Plus |
arm_3L | 1386669..1386825 | 726..882 | 99 | | Plus |
BS03270.complete Sequence
1058 bp (1058 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634711
> BS03270.complete
GAAGTTATCAGTCGACATGCTCCTGCTAAGTGGGGCACCGTCACAAGGCA
GACGCCCCAAAAATAGACCCCTCATCGGAACGGTGGAGGAGGGGGAGATG
CCGCCCAGTACCGTTCTGCAAATGCCGCCGGCTCCGTTGTCATCGAAATC
CGGACTGGTGCTGGGCGTCTGCTGTGACCAGCTGATGGCGGTGCAGCCAG
TGCAACGGGCATCCGGAGCAGCAGCAACCAAGAGCAATTCCCCGGATTGG
GGGAATCACAGGGCGAAACATCATGAAGGGTCTGCCGCGCCTTTCAAGTG
GATTCCGCCCTTTTTCATTATCCTCGCCACGCTCCTTGAGGTTCTCGTGT
TTCTATGGGTGGGTGCTGATCCACCAGAGGATTCTCTTCTGGTATATCGA
CCCGACCAGCGCCTGCAGCTCTGGAGATTCCTTAGCTATGCCCTGCTCCA
CGCCAGTTGGCTCCATCTGGGTTACAATGTGCTCACTCAGCTCCTGTTCG
GTGTGCCATTGGAGCTGGTACATGGATCGCTGAGAACGGGAGTCATTTAT
ATGGCCGGAGTTTTGGCTGGCTCTTTGGGAACTTCGGTGGTGGACTCGGA
AGTTTTTCTGGTGGGAGCCAGTGGAGGAGTTTACGCCTTGCTGGCCGCCC
AACTGGCGAGTCTTTTGCTCAACTTTGGTCAAATGAGACACGGGGTAATT
CAGCTAATGGCTGTGATTTTGTTCGTTTTCTGCGATTTGGGGTATGCCCT
CTATTCAAGAGAACTGGCAATGCATCAGCTGCAGACACGACCCTCTGTCT
CCTATATCGCTCACATGACCGGTGCTCTGGCCGGGATTAGTGTGGGTCTG
CTGCTTCTCCGGCAACTGGATGGTGGGCTGCGACCACGCCCACTCCGCTG
GTTGGCCCTGGGCGTATGGTGCATATTCAGCGCCTTTGGAATCGCCTTCA
ACTTGGTGAATACGGTCACAGCTCAACTTCTGGCCGAGGAGGAGGGCCAG
GTGATCAGGCAGCATCTGATGAATGACCTCGGAATGGGATGAAAGCTTTC
TAGACCAT
BS03270.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:50:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ru-RA | 1026 | CG1214-PA | 1..1026 | 17..1042 | 5130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ru-RA | 1798 | CG1214-RA | 321..1346 | 17..1042 | 5130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1386210..1386596 | 339..725 | 1935 | 100 | Plus |
3L | 28110227 | 3L | 1384517..1384842 | 17..342 | 1630 | 100 | Plus |
3L | 28110227 | 3L | 1386668..1386985 | 725..1042 | 1590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:50:19 has no hits.
BS03270.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:29:29 Download gff for
BS03270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ru-RA | 1..1026 | 17..1042 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:12:51 Download gff for
BS03270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ru-RA | 319..1354 | 8..1042 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:58:25 Download gff for
BS03270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ru-RA | 321..1345 | 17..1041 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:29:29 Download gff for
BS03270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ru-RA | 319..1354 | 8..1042 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:21:17 Download gff for
BS03270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ru-RA | 321..1345 | 17..1041 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:21:17 Download gff for
BS03270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1384517..1384840 | 17..340 | 100 | -> | Plus |
3L | 1386212..1386596 | 341..725 | 100 | -> | Plus |
3L | 1386669..1386984 | 726..1041 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:58:25 Download gff for
BS03270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1386669..1386984 | 726..1041 | 100 | | Plus |
arm_3L | 1384517..1384840 | 17..340 | 100 | -> | Plus |
arm_3L | 1386212..1386596 | 341..725 | 100 | -> | Plus |
BS03270.pep Sequence
Translation from 16 to 1041
> BS03270.pep
MLLLSGAPSQGRRPKNRPLIGTVEEGEMPPSTVLQMPPAPLSSKSGLVLG
VCCDQLMAVQPVQRASGAAATKSNSPDWGNHRAKHHEGSAAPFKWIPPFF
IILATLLEVLVFLWVGADPPEDSLLVYRPDQRLQLWRFLSYALLHASWLH
LGYNVLTQLLFGVPLELVHGSLRTGVIYMAGVLAGSLGTSVVDSEVFLVG
ASGGVYALLAAQLASLLLNFGQMRHGVIQLMAVILFVFCDLGYALYSREL
AMHQLQTRPSVSYIAHMTGALAGISVGLLLLRQLDGGLRPRPLRWLALGV
WCIFSAFGIAFNLVNTVTAQLLAEEEGQVIRQHLMNDLGMG*
BS03270.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ru-PA | 341 | CG1214-PA | 1..341 | 1..341 | 1756 | 100 | Plus |
rho-PB | 355 | CG1004-PB | 28..354 | 24..340 | 740 | 46.7 | Plus |
rho-PA | 355 | CG1004-PA | 28..354 | 24..340 | 740 | 46.7 | Plus |
stet-PA | 330 | CG33166-PA | 66..306 | 97..315 | 626 | 51.9 | Plus |
stet-PB | 485 | CG33166-PB | 221..461 | 97..315 | 626 | 51.9 | Plus |