Clone BS03272 Report

Search the DGRC for BS03272

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:32
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptDl-RA
Protein status:BS03272.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03272.3prime Sequence

866 bp (784 high quality bases) assembled on 2005-11-30

> BS03272.3prime
ATGGTCTAGAAAGCTTTTACATATGCGGAGTGCCGCAGACCACGGATCGC
TGCTGTTGCGCCGTCCCCGCTCCGCTGCCCGCTACCGAAGCTGCAGCCAT
TAGTTGGGATGAACAGGCTCCGGCCACTCCCGCCGCCGCCAACGAGGGCC
AACGCTGGCTACAGTAGGAACCCTCGCCTAAAACAGAGATCCTCTTGCCC
TCCGCCGCTCCCGGTCCTCCGCCAGACGCTCCCTTGGCTGAGCTGCCTGC
CGGCGAACCGCGGTGCATGAGCGTGGGATCGGTGTTGAGTTGCTTTTGCG
ACTTGGCTCTTTGTAGCGGAGCCACACAAAAGTCTGAGTTGGCATTGTTG
TTATCCGCCACCGAGGCCACATATCCGCCGTACATGAGACACTCGTCCGC
CGCTGCTGCCGCCGCCGCCGCTGCTGCTGCTGAGGCACAAATGTTGTTGA
CCGACTTGTCCCAGGTGTTTTTGATGATATTCGGGTTGCCGCCATCGAAG
GTGAGACCGCTGTTGCTGCCAGTTTTGCCGCCCAGAGAGGCTGAAGCCAA
AGCTACACCCACCCCACTGCCATTGTGATGCATTGTGGCCACCGCATTCT
GTTCGTTCTGCTTCCTGGCCTCCGCGTCGTCCTTTTCCTGAGCACGCTTA
CGCTTGCGCTTCATGCAGAAGACCACGCACGCCGCAATAACCGCCACCAA
AGGCATCGCAACGGAGAAAACAGCAATTAGGACTACCTGGGCATTGGTCA
AACCATCGGCTCTCGCTTGTGTGGTTGCTCCATATTGGTGGGCATCGAAG
GTCACCGAAATCGTAGGACTCCTCATCGCACTGCTTGCCCCCTGAACCAT
TGGCACACACGCATTC

BS03272.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:29:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG3619-PA 2502 Dl-RA 1710..2502 809..17 3965 100 Minus
CG3619-PB 2502 Dl-RB 1710..2502 809..17 3965 100 Minus
CG3619-PA 2502 Dl-RA 1679..1711 841..809 165 100 Minus
CG3619-PB 2502 Dl-RB 1679..1711 841..809 165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:14:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dl-RC 4581 CG3619-RC 2333..3181 866..17 4180 99.6 Minus
Dl-RB 3546 CG3619-RB 2333..3181 866..17 4180 99.6 Minus
Dl-RA 5278 CG3619-RA 2333..3181 866..17 4180 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:14:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19304828..19305676 17..866 4155 99.5 Plus
Blast to na_te.dros performed 2015-02-09 02:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2360..2484 531..402 116 56.9 Minus

BS03272.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:22:53 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:36:34 Download gff for BS03272.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3619-PB 1654..2502 17..866 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:02:29 Download gff for BS03272.3prime
Subject Subject Range Query Range Percent Splice Strand
Dl-RA 2333..3183 12..866 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:14:30 Download gff for BS03272.3prime
Subject Subject Range Query Range Percent Splice Strand
Dl-RA 2333..3183 12..866 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:14:30 Download gff for BS03272.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19304826..19305676 12..866 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:02:29 Download gff for BS03272.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15130548..15131398 12..866 99   Plus

BS03272.5prime Sequence

835 bp (771 high quality bases) assembled on 2005-11-30

> BS03272.5prime
GAAGTTATCAGTCGACATGCATTGGATTAAATGTTTATTAACAGCATTCA
TTTGCTTCACAGTCATCGTGCAGGTTCACAGTTCCGGCAGCTTTGAGTTG
CGCCTGAAGTACTTCAGCAACGATCACGGGCGGGACAACGAGGGTCGCTG
CTGCAGCGGGGAGTCGGACGGAGCGACGGGCAAGTGCCTGGGCAGCTGCA
AGACGCGGTTTCGCGTCTGCCTAAAGCACTACCAGGCCACCATCGACACC
ACCTCCCAGTGCACCTACGGGGACGTGATCACGCCCATTCTCGGCGAGAA
CTCGGTCAATCTGACCGACGCCCAGCGCTTCCAGAACAAGGGCTTCACGA
ATCCCATCCAGTTCCCCTTCTCGTTCTCATGGCCGGGTACCTTCTCGCTG
ATCGTCGAGGCCTGGCATGATACGAACAACAGCGGCAATGCGCGCACCAA
CAAGCTCCTCATCCAGCGACTCTTGGTGCAGCAGGTACTGGAAGTGTCCT
CCGAATGGAAGACGAACAAGTCGGAATCGCAGTACACGTCGCTGGAGTAC
GATTTCCGTGTCACCTGCGATCTCAACTACTACGGATCCGGCTGTGCCAA
GTTCTGCCGGCCCCGCGACGATTCATTTGGACACTCGACTTGCTCGGAGA
CGGGCGAAATTATCTGTTTGACCGGATGGCAGGGCGATTACTGTCACATA
CCCAAATGCGCCAAAGGCTGTGAACATGGACATTGCGACAAGCCCAATCA
ATGCGTTTGCCAACTGGGCTGGAAAGGAGCCTTGTGCAACGAGTGCGTTC
TGGACCCGAACTGCATCCATGGCACCTGCAACAAA

BS03272.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:29:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG3619-PA 2502 Dl-RA 1..819 17..835 4045 99.7 Plus
CG3619-PB 2502 Dl-RB 1..819 17..835 4045 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dl-RC 4581 CG3619-RC 678..1498 15..835 4075 99.8 Plus
Dl-RB 3546 CG3619-RB 678..1498 15..835 4075 99.8 Plus
Dl-RA 5278 CG3619-RA 678..1498 15..835 4075 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19319817..19320134 386..69 1590 100 Minus
3R 32079331 3R 19311816..19312064 701..453 1245 100 Minus
3R 32079331 3R 19306511..19306589 835..757 365 97.5 Minus
3R 32079331 3R 19316006..19316073 452..385 340 100 Minus
3R 32079331 3R 19325480..19325540 75..15 305 100 Minus
3R 32079331 3R 19308707..19308761 756..702 275 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:59:51 has no hits.

BS03272.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:22:54 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:36:35 Download gff for BS03272.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3619-PB 1..816 17..832 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:38:00 Download gff for BS03272.5prime
Subject Subject Range Query Range Percent Splice Strand
Dl-RA 670..1495 7..832 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:16:22 Download gff for BS03272.5prime
Subject Subject Range Query Range Percent Splice Strand
Dl-RA 670..1495 7..832 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:16:22 Download gff for BS03272.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19325482..19325548 7..73 95   Minus
3R 19306514..19306589 757..832 97 <- Minus
3R 19308707..19308761 702..756 100 <- Minus
3R 19311816..19312064 453..701 100 <- Minus
3R 19316006..19316072 386..452 100 <- Minus
3R 19319818..19320129 74..385 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:38:00 Download gff for BS03272.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15132236..15132311 757..832 97 <- Minus
arm_3R 15134429..15134483 702..756 100 <- Minus
arm_3R 15137538..15137786 453..701 100 <- Minus
arm_3R 15141728..15141794 386..452 100 <- Minus
arm_3R 15145540..15145851 74..385 100 <- Minus
arm_3R 15151204..15151270 7..73 95   Minus

BS03272.complete Sequence

2534 bp assembled on 2008-01-02

GenBank Submission: FJ634712

> BS03272.complete
GAAGTTATCAGTCGACATGCATTGGATTAAATGTTTATTAACAGCATTCA
TTTGCTTCACAGTCATCGTGCAGGTTCACAGTTCCGGCAGCTTTGAGTTG
CGCCTGAAGTACTTCAGCAACGATCACGGGCGGGACAACGAGGGTCGCTG
CTGCAGCGGGGAGTCGGACGGAGCGACGGGCAAGTGCCTGGGCAGCTGCA
AGACGCGGTTTCGCGTCTGCCTAAAGCACTACCAGGCCACCATCGACACC
ACCTCCCAGTGCACCTACGGGGACGTGATCACGCCCATTCTCGGCGAGAA
CTCGGTCAATCTGACCGACGCCCAGCGCTTCCAGAACAAGGGCTTCACGA
ATCCCATCCAGTTCCCCTTCTCGTTCTCATGGCCGGGTACCTTCTCGCTG
ATCGTCGAGGCCTGGCATGATACGAACAACAGCGGCAATGCGCGCACCAA
CAAGCTCCTCATCCAGCGACTCTTGGTGCAGCAGGTACTGGAAGTGTCCT
CCGAATGGAAGACGAACAAGTCGGAATCGCAGTACACGTCGCTGGAGTAC
GATTTCCGTGTCACCTGCGATCTCAACTACTACGGATCCGGCTGTGCCAA
GTTCTGCCGGCCCCGCGACGATTCATTTGGACACTCGACTTGCTCGGAGA
CGGGCGAAATTATCTGTTTGACCGGATGGCAGGGCGATTACTGTCACATA
CCCAAATGCGCCAAAGGCTGTGAACATGGACATTGCGACAAGCCCAATCA
ATGCGTTTGCCAACTGGGCTGGAAGGGAGCCTTGTGCAACGAGTGCGTTC
TGGAACCGAACTGCATCCATGGCACCTGCAACAAACCCTGGACTTGCATC
TGCAACGAGGGTTGGGGAGGCTTGTACTGCAACCAGGATCTGAACTACTG
CACCAACCACAGACCCTGCAAGAATGGCGGAACCTGCTTCAACACCGGCG
AGGGATTGTACACATGCAAATGCGCTCCAGGATACAGTGGTGATGATTGC
GAAAATGAGATCTACTCCTGCGATGCCGATGTCAATCCCTGCCAGAATGG
TGGTACCTGCATCGATGAGCCGCACACAAAAACCGGCTACAAGTGTCATT
GCGCCAACGGCTGGAGCGGAAAGATGTGCGAGGAGAAAGTGCTCACGTGT
TCGGACAAACCCTGTCATCAGGGAATCTGCCGCAACGTTCGTCCTGGTTT
GGGAAGCAAGGGTCAGGGCTACCAGTGCGAATGTCCCATTGGCTACAGCG
GACCCAACTGCGATCTCCAGCTGGACAACTGCAGTCCGAATCCCTGCATT
AACGGTGGAAGCTGTCAGCCGAGCGGAAAGTGTATTTGCCCAGCGGGATT
TTCGGGAACGAGATGCGAGACCAACATTGACGATTGTCTTGGCCACCAGT
GCGAGAACGGAGGCACCTGCATAGATATGGTCAACCAATATCGCTGCCAA
TGCGTTCCCGGTTTCCATGGCACCCACTGTAGTAGCAAAGTTGACTTGTG
CCTCATCAGACCGTGTGCCAATGGAGGAACCTGCTTGAATCTCAACAACG
ATTACCAGTGCACCTGTCGTGCGGGATTTACTGGCAAGGATTGCTCCGTG
GACATCGATGAGTGCAGCAGTGGACCCTGTCATAACGGCGGCACCTGCAT
GAACCGTGTCAATTCGTTCGAATGCGTGTGTGCCAATGGTTTCAGGGGCA
AGCAGTGCGATGAGGAGTCCTACGATTCGGTGACCTTCGATGCCCACCAA
TATGGAGCAACCACACAAGCGAGAGCCGATGGTTTGACCAATGCCCAGGT
AGTCCTAATTGCTGTTTTCTCCGTTGCGATGCCTTTGGTGGCGGTTATTG
CGGCGTGCGTGGTCTTCTGCATGAAGCGCAAGCGTAAGCGTGCTCAGGAA
AAGGACGACGCGGAGGCCAGGAAGCAGAACGAACAGAATGCGGTGGCCAC
AATGCATCACAATGGCAGTGGGGTGGGTGTAGCTTTGGCTTCAGCCTCTC
TGGGCGGCAAAACTGGCAGCAACAGCGGTCTCACCTTCGATGGCGGCAAC
CCGAATATCATCAAAAACACCTGGGACAAGTCGGTCAACAACATTTGTGC
CTCAGCAGCAGCAGCGGCGGCGGCGGCAGCAGCGGCGGACGAGTGTCTCA
TGTACGGCGGATATGTGGCCTCGGTGGCGGATAACAACAATGCCAACTCA
GACTTTTGTGTGGCTCCGCTACAAAGAGCCAAGTCGCAAAAGCAACTCAA
CACCGATCCCACGCTCATGCACCGCGGTTCGCCGGCAGGCAGCTCAGCCA
AGGGAGCGTCTGGCGGAGGACCGGGAGCGGCGGAGGGCAAGAGGATCTCT
GTTTTAGGCGAGGGTTCCTACTGTAGCCAGCGTTGGCCCTCGTTGGCGGC
GGCGGGAGTGGCCGGAGCCTGTTCATCCCAACTAATGGCTGCAGCTTCGG
TAGCGGGCAGCGGAGCGGGGACGGCGCAACAGCAGCGATCCGTGGTCTGC
GGCACTCCGCATATGTAAAAGCTTTCTAGACCAT

BS03272.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dl-RC 2502 CG3619-PC 1..2502 17..2518 12510 100 Plus
Dl-RB 2502 CG3619-PB 1..2502 17..2518 12510 100 Plus
Dl-RA 2502 CG3619-PA 1..2502 17..2518 12510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dl-RC 4581 CG3619-RC 678..3181 15..2518 12520 100 Plus
Dl-RB 3546 CG3619-RB 678..3181 15..2518 12520 100 Plus
Dl-RA 5278 CG3619-RA 678..3181 15..2518 12520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:36:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19304828..19306589 2518..757 8810 100 Minus
3R 32079331 3R 19319817..19320134 386..69 1590 100 Minus
3R 32079331 3R 19311816..19312064 701..453 1245 100 Minus
3R 32079331 3R 19316006..19316073 452..385 340 100 Minus
3R 32079331 3R 19325480..19325540 75..15 305 100 Minus
3R 32079331 3R 19308707..19308761 756..702 275 100 Minus
Blast to na_te.dros performed 2014-11-28 05:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2360..2484 2004..2133 116 56.9 Plus

BS03272.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:10 Download gff for BS03272.complete
Subject Subject Range Query Range Percent Splice Strand
Dl-RB 1..2502 17..2518 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:35:11 Download gff for BS03272.complete
Subject Subject Range Query Range Percent Splice Strand
Dl-RB 676..3175 17..2516 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:11 Download gff for BS03272.complete
Subject Subject Range Query Range Percent Splice Strand
Dl-RA 680..3179 17..2516 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:04:10 Download gff for BS03272.complete
Subject Subject Range Query Range Percent Splice Strand
Dl-RB 666..3179 7..2523 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:14:40 Download gff for BS03272.complete
Subject Subject Range Query Range Percent Splice Strand
Dl-RA 680..3179 17..2516 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:14:40 Download gff for BS03272.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19319818..19320129 74..385 100 <- Minus
3R 19325482..19325538 17..73 100   Minus
3R 19304830..19306589 757..2516 100 <- Minus
3R 19308707..19308761 702..756 100 <- Minus
3R 19311816..19312064 453..701 100 <- Minus
3R 19316006..19316072 386..452 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:11 Download gff for BS03272.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15130552..15132311 757..2516 100 <- Minus
arm_3R 15134429..15134483 702..756 100 <- Minus
arm_3R 15137538..15137786 453..701 100 <- Minus
arm_3R 15141728..15141794 386..452 100 <- Minus
arm_3R 15145540..15145851 74..385 100 <- Minus
arm_3R 15151204..15151260 17..73 100   Minus

BS03272.pep Sequence

Translation from 16 to 2517

> BS03272.pep
MHWIKCLLTAFICFTVIVQVHSSGSFELRLKYFSNDHGRDNEGRCCSGES
DGATGKCLGSCKTRFRVCLKHYQATIDTTSQCTYGDVITPILGENSVNLT
DAQRFQNKGFTNPIQFPFSFSWPGTFSLIVEAWHDTNNSGNARTNKLLIQ
RLLVQQVLEVSSEWKTNKSESQYTSLEYDFRVTCDLNYYGSGCAKFCRPR
DDSFGHSTCSETGEIICLTGWQGDYCHIPKCAKGCEHGHCDKPNQCVCQL
GWKGALCNECVLEPNCIHGTCNKPWTCICNEGWGGLYCNQDLNYCTNHRP
CKNGGTCFNTGEGLYTCKCAPGYSGDDCENEIYSCDADVNPCQNGGTCID
EPHTKTGYKCHCANGWSGKMCEEKVLTCSDKPCHQGICRNVRPGLGSKGQ
GYQCECPIGYSGPNCDLQLDNCSPNPCINGGSCQPSGKCICPAGFSGTRC
ETNIDDCLGHQCENGGTCIDMVNQYRCQCVPGFHGTHCSSKVDLCLIRPC
ANGGTCLNLNNDYQCTCRAGFTGKDCSVDIDECSSGPCHNGGTCMNRVNS
FECVCANGFRGKQCDEESYDSVTFDAHQYGATTQARADGLTNAQVVLIAV
FSVAMPLVAVIAACVVFCMKRKRKRAQEKDDAEARKQNEQNAVATMHHNG
SGVGVALASASLGGKTGSNSGLTFDGGNPNIIKNTWDKSVNNICASAAAA
AAAAAAADECLMYGGYVASVADNNNANSDFCVAPLQRAKSQKQLNTDPTL
MHRGSPAGSSAKGASGGGPGAAEGKRISVLGEGSYCSQRWPSLAAAGVAG
ACSSQLMAAASVAGSGAGTAQQQRSVVCGTPHM*

BS03272.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dl-PC 833 CG3619-PC 1..833 1..833 4681 100 Plus
Dl-PB 833 CG3619-PB 1..833 1..833 4681 100 Plus
Dl-PA 833 CG3619-PA 1..833 1..833 4681 100 Plus
Ser-PB 1407 CG6127-PB 66..684 6..566 1076 34.4 Plus
Ser-PA 1407 CG6127-PA 66..684 6..566 1076 34.4 Plus
Ser-PB 1407 CG6127-PB 478..952 217..565 633 31.2 Plus
Ser-PB 1407 CG6127-PB 474..837 275..568 449 28.1 Plus
Ser-PB 1407 CG6127-PB 239..417 405..595 189 27.3 Plus