Clone Sequence Records
BS03306.5prime Sequence
609 bp (608 high quality bases) assembled on 2005-11-29
> BS03306.5prime
GAAGTTATCAGTCGACATGCAAACCATCAAGTGCGTGGTCGTCGGCGACG
GAGCCGTGGGTAAGACATGCCTGCTCATCTCGTATACAACCAACAAGTTC
CCGTCGGAGTACGTGCCCACGGTGTTCGACAACTATGCGGTCACTGTGAT
GATCGGCGGTGAGCCCTACACACTGGGCCTGTTCGATACGGCCGGACAGG
AGGACTACGATCGGCTGCGTCCGCTCTCCTATCCGCAGACGGATGTCTTC
CTTGTCTGCTTTTCGGTGGTCAGTCCCAGTTCCTTCGAGAACGTCAAGGA
GAAGTGGGTGCCCGAGATTACACACCATTGCCAAAAGACGCCGTTCCTGC
TGGCGGGCACACAGATTGATTTGCGCGACGAGAACAGCACGCTGGAGAAG
CTGGCCAAGAACAAGCAGAAGCCCATCACCATGGAGCAGGGCGAGAAGCT
GGCCAAGGAGCTGAAGGCCGTCAAGTACGTGGAGTGCTCGGCCTTGACAC
AGAAGGGCCTGAAAAATGTATTCGACGAGGCCATCCTGGCCGCCCTCGAG
CCACCAGAGCCCACAAAGAAAAGGAAGTGCAAATTCTTATAAAAGCTTTC
TAGACCATT
BS03306.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:29:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12530-PA | 576 | Cdc42-RA | 1..576 | 17..592 | 2855 | 99.8 | Plus |
CG12530-PB | 576 | Cdc42-RB | 1..576 | 17..592 | 2855 | 99.8 | Plus |
CG8556-PA | 579 | Rac2-RA | 169..233 | 185..249 | 175 | 90.7 | Plus |
CG2248-PA | 579 | Rac1-RA | 10..59 | 26..75 | 150 | 92 | Plus |
CG2248-PA | 579 | Rac1-RA | 464..520 | 480..536 | 135 | 89.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:03:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdc42-RD | 2005 | CG12530-RD | 84..661 | 15..592 | 2875 | 99.8 | Plus |
Cdc42-RC | 2078 | CG12530-RC | 157..734 | 15..592 | 2875 | 99.8 | Plus |
Cdc42-RA | 1392 | CG12530-RA | 157..734 | 15..592 | 2875 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:03:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19697956..19698245 | 15..304 | 1450 | 100 | Plus |
X | 23542271 | X | 19698305..19698594 | 303..592 | 1435 | 99.7 | Plus |
3L | 28110227 | 3L | 1301827..1302347 | 536..16 | 595 | 74.3 | Minus |
3L | 28110227 | 3L | 7434278..7434511 | 249..16 | 465 | 79.9 | Minus |
3R | 32079331 | 3R | 27638122..27638245 | 173..296 | 200 | 77.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:03:55 has no hits.
BS03306.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:22:59 Download gff for
BS03306.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdc42-PB | 1..576 | 17..592 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:36:42 Download gff for
BS03306.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12530-PB | 1..576 | 17..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:40:14 Download gff for
BS03306.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdc42-RC | 153..744 | 9..600 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:47:16 Download gff for
BS03306.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdc42-RA | 153..744 | 9..600 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:47:16 Download gff for
BS03306.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19697952..19698245 | 9..304 | 98 | -> | Plus |
X | 19698307..19698604 | 305..600 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:40:14 Download gff for
BS03306.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19591985..19592278 | 9..304 | 98 | -> | Plus |
arm_X | 19592340..19592637 | 305..600 | 98 | | Plus |
BS03306.complete Sequence
608 bp (608 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634713
> BS03306.complete
GAAGTTATCAGTCGACATGCAAACCATCAAGTGCGTGGTCGTCGGCGACG
GAGCCGTGGGTAAGACATGCCTGCTCATCTCGTATACAACCAACAAGTTC
CCGTCGGAGTACGTGCCCACGGTGTTCGACAACTATGCGGTCACTGTGAT
GATCGGCGGTGAGCCCTACACACTGGGCCTGTTCGATACGGCCGGACAGG
AGGACTACGATCGGCTGCGTCCGCTCTCCTATCCGCAGACGGATGTCTTC
CTTGTCTGCTTTTCGGTGGTCAGTCCCAGTTCCTTCGAGAACGTCAAGGA
GAAGTGGGTGCCCGAGATTACACACCATTGCCAAAAGACGCCGTTCCTGC
TGGTGGGCACACAGATTGATTTGCGCGACGAGAACAGCACGCTGGAGAAG
CTGGCCAAGAACAAGCAGAAGCCCATCACCATGGAGCAGGGCGAGAAGCT
GGCCAAGGAGCTGAAGGCCGTCAAGTACGTGGAGTGCTCGGCCTTGACAC
AGAAGGGCCTGAAAAATGTATTCGACGAGGCCATCCTGGCCGCCCTCGAG
CCACCAGAGCCCACAAAGAAAAGGAAGTGCAAATTCTTATAAAAGCTTTC
TAGACCAT
BS03306.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:38:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdc42-RD | 576 | CG12530-PD | 1..576 | 17..592 | 2880 | 100 | Plus |
Cdc42-RC | 576 | CG12530-PC | 1..576 | 17..592 | 2880 | 100 | Plus |
Cdc42-RA | 576 | CG12530-PA | 1..576 | 17..592 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:38:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdc42-RD | 2005 | CG12530-RD | 84..661 | 15..592 | 2890 | 100 | Plus |
Cdc42-RC | 2078 | CG12530-RC | 157..734 | 15..592 | 2890 | 100 | Plus |
Cdc42-RA | 1392 | CG12530-RA | 157..734 | 15..592 | 2890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:38:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19697956..19698245 | 15..304 | 1450 | 100 | Plus |
X | 23542271 | X | 19698305..19698594 | 303..592 | 1450 | 100 | Plus |
3L | 28110227 | 3L | 1301827..1302347 | 536..16 | 610 | 74.5 | Minus |
3L | 28110227 | 3L | 7434278..7434511 | 249..16 | 465 | 79.9 | Minus |
3R | 32079331 | 3R | 27638122..27638245 | 173..296 | 200 | 77.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:38:13 has no hits.
BS03306.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:44 Download gff for
BS03306.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdc42-RB | 1..576 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:18 Download gff for
BS03306.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdc42-RB | 228..819 | 9..600 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:12 Download gff for
BS03306.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdc42-RC | 159..732 | 17..590 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:45 Download gff for
BS03306.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdc42-RB | 228..819 | 9..600 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:35 Download gff for
BS03306.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdc42-RA | 159..732 | 17..590 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:35 Download gff for
BS03306.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19697958..19698245 | 17..304 | 100 | -> | Plus |
X | 19698307..19698592 | 305..590 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:12 Download gff for
BS03306.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19591991..19592278 | 17..304 | 100 | -> | Plus |
arm_X | 19592340..19592625 | 305..590 | 100 | | Plus |
BS03306.pep Sequence
Translation from 16 to 591
> BS03306.pep
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP
YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE
ITHHCQKTPFLLVGTQIDLRDENSTLEKLAKNKQKPITMEQGEKLAKELK
AVKYVECSALTQKGLKNVFDEAILAALEPPEPTKKRKCKFL*
BS03306.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdc42-PD | 191 | CG12530-PD | 1..191 | 1..191 | 1000 | 100 | Plus |
Cdc42-PC | 191 | CG12530-PC | 1..191 | 1..191 | 1000 | 100 | Plus |
Cdc42-PA | 191 | CG12530-PA | 1..191 | 1..191 | 1000 | 100 | Plus |
Rac1-PB | 192 | CG2248-PB | 1..192 | 1..191 | 721 | 69.8 | Plus |
Rac1-PA | 192 | CG2248-PA | 1..192 | 1..191 | 721 | 69.8 | Plus |