Clone BS03306 Report

Search the DGRC for BS03306

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:33
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCdc42-RA
Protein status:BS03306.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03306.5prime Sequence

609 bp (608 high quality bases) assembled on 2005-11-29

> BS03306.5prime
GAAGTTATCAGTCGACATGCAAACCATCAAGTGCGTGGTCGTCGGCGACG
GAGCCGTGGGTAAGACATGCCTGCTCATCTCGTATACAACCAACAAGTTC
CCGTCGGAGTACGTGCCCACGGTGTTCGACAACTATGCGGTCACTGTGAT
GATCGGCGGTGAGCCCTACACACTGGGCCTGTTCGATACGGCCGGACAGG
AGGACTACGATCGGCTGCGTCCGCTCTCCTATCCGCAGACGGATGTCTTC
CTTGTCTGCTTTTCGGTGGTCAGTCCCAGTTCCTTCGAGAACGTCAAGGA
GAAGTGGGTGCCCGAGATTACACACCATTGCCAAAAGACGCCGTTCCTGC
TGGCGGGCACACAGATTGATTTGCGCGACGAGAACAGCACGCTGGAGAAG
CTGGCCAAGAACAAGCAGAAGCCCATCACCATGGAGCAGGGCGAGAAGCT
GGCCAAGGAGCTGAAGGCCGTCAAGTACGTGGAGTGCTCGGCCTTGACAC
AGAAGGGCCTGAAAAATGTATTCGACGAGGCCATCCTGGCCGCCCTCGAG
CCACCAGAGCCCACAAAGAAAAGGAAGTGCAAATTCTTATAAAAGCTTTC
TAGACCATT

BS03306.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:29:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG12530-PA 576 Cdc42-RA 1..576 17..592 2855 99.8 Plus
CG12530-PB 576 Cdc42-RB 1..576 17..592 2855 99.8 Plus
CG8556-PA 579 Rac2-RA 169..233 185..249 175 90.7 Plus
CG2248-PA 579 Rac1-RA 10..59 26..75 150 92 Plus
CG2248-PA 579 Rac1-RA 464..520 480..536 135 89.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:03:57
Subject Length Description Subject Range Query Range Score Percent Strand
Cdc42-RD 2005 CG12530-RD 84..661 15..592 2875 99.8 Plus
Cdc42-RC 2078 CG12530-RC 157..734 15..592 2875 99.8 Plus
Cdc42-RA 1392 CG12530-RA 157..734 15..592 2875 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:03:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19697956..19698245 15..304 1450 100 Plus
X 23542271 X 19698305..19698594 303..592 1435 99.7 Plus
3L 28110227 3L 1301827..1302347 536..16 595 74.3 Minus
3L 28110227 3L 7434278..7434511 249..16 465 79.9 Minus
3R 32079331 3R 27638122..27638245 173..296 200 77.4 Plus
Blast to na_te.dros performed on 2015-02-12 06:03:55 has no hits.

BS03306.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:22:59 Download gff for BS03306.5prime
Subject Subject Range Query Range Percent Splice Strand
Cdc42-PB 1..576 17..592 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:36:42 Download gff for BS03306.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12530-PB 1..576 17..592 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:40:14 Download gff for BS03306.5prime
Subject Subject Range Query Range Percent Splice Strand
Cdc42-RC 153..744 9..600 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:47:16 Download gff for BS03306.5prime
Subject Subject Range Query Range Percent Splice Strand
Cdc42-RA 153..744 9..600 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:47:16 Download gff for BS03306.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19697952..19698245 9..304 98 -> Plus
X 19698307..19698604 305..600 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:40:14 Download gff for BS03306.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19591985..19592278 9..304 98 -> Plus
arm_X 19592340..19592637 305..600 98   Plus

BS03306.complete Sequence

608 bp (608 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634713

> BS03306.complete
GAAGTTATCAGTCGACATGCAAACCATCAAGTGCGTGGTCGTCGGCGACG
GAGCCGTGGGTAAGACATGCCTGCTCATCTCGTATACAACCAACAAGTTC
CCGTCGGAGTACGTGCCCACGGTGTTCGACAACTATGCGGTCACTGTGAT
GATCGGCGGTGAGCCCTACACACTGGGCCTGTTCGATACGGCCGGACAGG
AGGACTACGATCGGCTGCGTCCGCTCTCCTATCCGCAGACGGATGTCTTC
CTTGTCTGCTTTTCGGTGGTCAGTCCCAGTTCCTTCGAGAACGTCAAGGA
GAAGTGGGTGCCCGAGATTACACACCATTGCCAAAAGACGCCGTTCCTGC
TGGTGGGCACACAGATTGATTTGCGCGACGAGAACAGCACGCTGGAGAAG
CTGGCCAAGAACAAGCAGAAGCCCATCACCATGGAGCAGGGCGAGAAGCT
GGCCAAGGAGCTGAAGGCCGTCAAGTACGTGGAGTGCTCGGCCTTGACAC
AGAAGGGCCTGAAAAATGTATTCGACGAGGCCATCCTGGCCGCCCTCGAG
CCACCAGAGCCCACAAAGAAAAGGAAGTGCAAATTCTTATAAAAGCTTTC
TAGACCAT

BS03306.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:38:14
Subject Length Description Subject Range Query Range Score Percent Strand
Cdc42-RD 576 CG12530-PD 1..576 17..592 2880 100 Plus
Cdc42-RC 576 CG12530-PC 1..576 17..592 2880 100 Plus
Cdc42-RA 576 CG12530-PA 1..576 17..592 2880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
Cdc42-RD 2005 CG12530-RD 84..661 15..592 2890 100 Plus
Cdc42-RC 2078 CG12530-RC 157..734 15..592 2890 100 Plus
Cdc42-RA 1392 CG12530-RA 157..734 15..592 2890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19697956..19698245 15..304 1450 100 Plus
X 23542271 X 19698305..19698594 303..592 1450 100 Plus
3L 28110227 3L 1301827..1302347 536..16 610 74.5 Minus
3L 28110227 3L 7434278..7434511 249..16 465 79.9 Minus
3R 32079331 3R 27638122..27638245 173..296 200 77.4 Plus
Blast to na_te.dros performed on 2014-11-27 14:38:13 has no hits.

BS03306.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:44 Download gff for BS03306.complete
Subject Subject Range Query Range Percent Splice Strand
Cdc42-RB 1..576 17..592 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:18 Download gff for BS03306.complete
Subject Subject Range Query Range Percent Splice Strand
Cdc42-RB 228..819 9..600 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:12 Download gff for BS03306.complete
Subject Subject Range Query Range Percent Splice Strand
Cdc42-RC 159..732 17..590 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:45 Download gff for BS03306.complete
Subject Subject Range Query Range Percent Splice Strand
Cdc42-RB 228..819 9..600 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:35 Download gff for BS03306.complete
Subject Subject Range Query Range Percent Splice Strand
Cdc42-RA 159..732 17..590 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:35 Download gff for BS03306.complete
Subject Subject Range Query Range Percent Splice Strand
X 19697958..19698245 17..304 100 -> Plus
X 19698307..19698592 305..590 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:12 Download gff for BS03306.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19591991..19592278 17..304 100 -> Plus
arm_X 19592340..19592625 305..590 100   Plus

BS03306.pep Sequence

Translation from 16 to 591

> BS03306.pep
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP
YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE
ITHHCQKTPFLLVGTQIDLRDENSTLEKLAKNKQKPITMEQGEKLAKELK
AVKYVECSALTQKGLKNVFDEAILAALEPPEPTKKRKCKFL*

BS03306.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
Cdc42-PD 191 CG12530-PD 1..191 1..191 1000 100 Plus
Cdc42-PC 191 CG12530-PC 1..191 1..191 1000 100 Plus
Cdc42-PA 191 CG12530-PA 1..191 1..191 1000 100 Plus
Rac1-PB 192 CG2248-PB 1..192 1..191 721 69.8 Plus
Rac1-PA 192 CG2248-PA 1..192 1..191 721 69.8 Plus