Clone Sequence Records
BS03312.3prime Sequence
841 bp (751 high quality bases) assembled on 2005-11-30
> BS03312.3prime
ATGGTCTAGAAAGCTTCTAGTCGCGTCCCACTTTGTGAGTGGCCACGGGC
TTATCCACCCGCACCACCCGTTCGGCTACGTTCAGGTAGGCCTCGTACTC
AACGATATCCGGCGTGGTGTCGTAATGGTAGTGACCGCCCCAGTTGCTGA
AGGAGAAGGAGTGGAAGTGCTGCAGGCGAAGGTCCAGGTCGTGCTCCTTG
GTCACCAGCGTGCCCACGGCGTTCAGCTGGGCGGGCATCTCGTAGAACTT
GAGCCACTCGTTCACCTCCTCGTCGCTGTTGATGGGCGTCTTGCTGAAGT
CCCGCATCACGTGCTGGTGGGCAGCGCCCTTCTTGATCAGAAAAATGCCA
CCCAGACCCACCACCTTGTCCCCGTAGTGGTTCTCCAGGCCCTTGCGGAT
GCACTCGATGAAGTTCTGTTCGCCAGTGCGCTGCTTGGCGGTGATTTTCA
ACACCTGACCAGGCTTGCCCTGGCTGAGGAAGAGGTTGAGAAGCAGGGCG
CACCTGGGCTCTGTGTGGGGTATCTTCTCCAGGACGCACTCCTCCTGCTC
TCCCCTCACAGTGGCCGTGTAGCTGCCGTTCGTGAGCTCATCCTTCTCGT
TCACGGACAAGTTGAAGATGCCCTCGCAGTTGGATCCCCGGATGGGCCAA
GGTCCCGCTCCGGCGCCCACGGCGAACACCGTGCCGGGGCCCTGGATCTT
TCGCGTGATCTCGGCGATGTTGTACAGCTTATCTCGCTGCACGAGGGGCA
GCAGAAAGGGTGGGCCTCCCGCCTCCAGCAGCGTGGGCTTGCCGCCCAGT
CCACTCTCCACCAGGCCGAACTGCTTGGCCTTCAGATCCGG
BS03312.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:29:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9119-PA | 969 | CG9119-RA | 145..969 | 841..17 | 4125 | 100 | Minus |
CG32335-PA | 1086 | CG32335-RA | 853..908 | 250..195 | 155 | 91 | Minus |
CG32335-PA | 1086 | CG32335-RA | 958..1032 | 145..71 | 150 | 88 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:11:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9119-RA | 1212 | CG9119-RA | 301..1126 | 841..16 | 4130 | 100 | Minus |
CG32335-RB | 1082 | CG32335-RB | 233..1014 | 823..42 | 1105 | 76.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:11:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1203402..1204227 | 16..841 | 4130 | 100 | Plus |
3L | 28110227 | 3L | 1201939..1202720 | 42..823 | 1090 | 76 | Plus |
Blast to na_te.dros performed on 2015-01-31 15:11:18 has no hits.
BS03312.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:23:06 Download gff for
BS03312.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9119-PA | 145..969 | 17..841 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:36:52 Download gff for
BS03312.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9119-PA | 145..969 | 17..841 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:24:36 Download gff for
BS03312.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9119-RA | 301..1137 | 3..841 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:40:50 Download gff for
BS03312.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9119-RA | 301..1137 | 3..841 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:40:50 Download gff for
BS03312.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1203391..1204227 | 3..841 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:24:36 Download gff for
BS03312.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1203391..1204227 | 3..841 | 99 | | Plus |
BS03312.5prime Sequence
821 bp (705 high quality bases) assembled on 2005-11-30
> BS03312.5prime
GAAGTTATCAGTCGACATGAGCCAGAACCAACTGAGTACGGAGCAACTGC
TCTTCGAGGAGAAGCCGCTGTACGTGCCCCCATTGTCAGAGTTGCAGAAC
GTTATACAGGGTGCCCTGGCGGCCAACTTCGCCAATGTGAATGTCAGTGT
GGGCCCTTGTCCGGATCTGAAGGCCAAGCAGTTCGGCCTGGTGGAGAGTG
GACTGGGCGGCAAGCCCACGCTGCTGGAGGCGGGAGGCCCACCCTTTCTG
CTGCCCCTCGTGCAGCGAGATAAGCTGTACAACATCGCCGAGATCACGCG
AAAGATCCAGGGCCCCGGCACGGTGTTCGCCGTGGGCGCCGGAGCGGGAC
CTTGGCCCATCCGGGGATCCAACTGCGAGGGCATCTTCAACTTGTCCGTG
AACGAGAAGGATGAGCTCACGAACGGCAGCTACACGGCCACTGTGAGGGG
AGAGCAGGAGGAGTGCGTCCTGGAGAAGATACCCCACACAGAGCCCAGGT
GCGCCCTGCTTCTCAACCTCTTCCTCAGCCAGGGCAAGCCTGGTCAGGTG
TTGAAAATCACCGCCAAGCAGCGCACTGGCGAACAGAACTTCATCGAGTG
CATCCGCAAGGGCCTGGAGAACCACTACGGGGACAAGGTGGTGGGTCTGG
GTGGCATTTTTCTGATCAAGAAGGGCGCTGCCCACCAGCACGTGATGCGG
GACTTCAGCAAGACGCCCATCAACAGCGACGAGGAGGTGAACGAGTGGCT
CAAGTTCTACGAGATGCCCGCCCAGCTGACCGCCGTGGGCACGCTGGTGA
CCAAGGAGCACGACCTGGACC
BS03312.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:30:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9119-PA | 969 | CG9119-RA | 1..805 | 17..821 | 4000 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:28:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9119-RA | 1212 | CG9119-RA | 157..961 | 17..821 | 4010 | 99.9 | Plus |
CG32335-RB | 1082 | CG32335-RB | 92..861 | 38..807 | 820 | 74.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:28:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1203567..1204287 | 821..101 | 3590 | 99.9 | Minus |
3L | 28110227 | 3L | 1202092..1202758 | 807..141 | 785 | 74.5 | Minus |
3L | 28110227 | 3L | 1204555..1204639 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:28:19 has no hits.
BS03312.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:23:08 Download gff for
BS03312.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9119-PA | 1..805 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:36:53 Download gff for
BS03312.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9119-PA | 1..805 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:35:19 Download gff for
BS03312.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9119-RA | 149..961 | 9..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:48:52 Download gff for
BS03312.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9119-RA | 149..961 | 9..821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:48:52 Download gff for
BS03312.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1203567..1204286 | 102..821 | 99 | <- | Minus |
3L | 1204555..1204647 | 9..101 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:35:19 Download gff for
BS03312.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1203567..1204286 | 102..821 | 99 | <- | Minus |
arm_3L | 1204555..1204647 | 9..101 | 95 | | Minus |
BS03312.complete Sequence
1001 bp (1001 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634714
> BS03312.complete
GAAGTTATCAGTCGACATGAGCCAGAACCAACTGAGTACGGAGCAACTGC
TCTTCGAGGAGAAGCCGCTGTACGTGCCCCCATTGTCAGAGTTGCAGAAC
GTTATACAGGGTGCCCTGGCGGCCAACTTCGCCAATGTGAATGTCAGTGT
GGGCCCTTGTCCGGATCTGAAGGCCAAGCAGTTCGGCCTGGTGGAGAGTG
GACTGGGCGGCAAGCCCACGCTGCTGGAGGCGGGAGGCCCACCCTTTCTG
CTGCCCCTCGTGCAGCGAGATAAGCTGTACAACATCGCCGAGATCACGCG
AAAGATCCAGGGCCCCGGCACGGTGTTCGCCGTGGGCGCCGGAGCGGGAC
CTTGGCCCATCCGGGGATCCAACTGCGAGGGCATCTTCAACTTGTCCGTG
AACGAGAAGGATGAGCTCACGAACGGCAGCTACACGGCCACTGTGAGGGG
AGAGCAGGAGGAGTGCGTCCTGGAGAAGATACCCCACACAGAGCCCAGGT
GCGCCCTGCTTCTCAACCTCTTCCTCAGCCAGGGCAAGCCTGGTCAGGTG
TTGAAAATCACCGCCAAGCAGCGCACTGGCGAACAGAACTTCATCGAGTG
CATCCGCAAGGGCCTGGAGAACCACTACGGGGACAAGGTGGTGGGTCTGG
GTGGCATTTTTCTGATCAAGAAGGGCGCTGCCCACCAGCACGTGATGCGG
GACTTCAGCAAGACGCCCATCAACAGCGACGAGGAGGTGAACGAGTGGCT
CAAGTTCTACGAGATGCCCGCCCAGCTGAACGCCGTGGGCACGCTGGTGA
CCAAGGAGCACGACCTGGACCTTCGCCTGCAGCACTTCCACTCCTTCTCC
TTCAGCAACTGGGGCGGTCACTACCATTACGACACCACGCCGGATATCGT
TGAGTACGAGGCCTACCTGAACGTAGCCGAACGGGTGGTGCGGGTGGATA
AGCCCGTGGCCACTCACAAAGTGGGACGCGACTAGAAGCTTTCTAGACCA
T
BS03312.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:45:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9119-RA | 969 | CG9119-PA | 1..969 | 17..985 | 4845 | 100 | Plus |
CG32335-RB | 969 | CG32335-PB | 22..944 | 38..960 | 1135 | 74.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:45:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9119-RA | 1212 | CG9119-RA | 157..1126 | 17..986 | 4850 | 100 | Plus |
CG32335-RB | 1082 | CG32335-RB | 92..1014 | 38..960 | 1135 | 74.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1203402..1204287 | 986..101 | 4430 | 100 | Minus |
3L | 28110227 | 3L | 1201939..1202758 | 960..141 | 1115 | 75.7 | Minus |
3L | 28110227 | 3L | 1204555..1204639 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:45:16 has no hits.
BS03312.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:47 Download gff for
BS03312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9119-RA | 1..969 | 17..985 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:18:17 Download gff for
BS03312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9119-RA | 146..1134 | 9..999 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:31 Download gff for
BS03312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9119-RA | 157..1125 | 17..985 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:47 Download gff for
BS03312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9119-RA | 146..1134 | 9..999 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:03 Download gff for
BS03312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9119-RA | 157..1125 | 17..985 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:03 Download gff for
BS03312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1203403..1204286 | 102..985 | 100 | <- | Minus |
3L | 1204555..1204639 | 17..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:31 Download gff for
BS03312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1203403..1204286 | 102..985 | 100 | <- | Minus |
arm_3L | 1204555..1204639 | 17..101 | 100 | | Minus |
BS03312.pep Sequence
Translation from 16 to 984
> BS03312.pep
MSQNQLSTEQLLFEEKPLYVPPLSELQNVIQGALAANFANVNVSVGPCPD
LKAKQFGLVESGLGGKPTLLEAGGPPFLLPLVQRDKLYNIAEITRKIQGP
GTVFAVGAGAGPWPIRGSNCEGIFNLSVNEKDELTNGSYTATVRGEQEEC
VLEKIPHTEPRCALLLNLFLSQGKPGQVLKITAKQRTGEQNFIECIRKGL
ENHYGDKVVGLGGIFLIKKGAAHQHVMRDFSKTPINSDEEVNEWLKFYEM
PAQLNAVGTLVTKEHDLDLRLQHFHSFSFSNWGGHYHYDTTPDIVEYEAY
LNVAERVVRVDKPVATHKVGRD*
BS03312.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9119-PA | 322 | CG9119-PA | 1..322 | 1..322 | 1699 | 100 | Plus |
CG32335-PB | 322 | CG32335-PB | 1..322 | 1..322 | 1350 | 76.7 | Plus |