Clone BS03312 Report

Search the DGRC for BS03312

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:33
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptCG9119-RA
Protein status:BS03312.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03312.3prime Sequence

841 bp (751 high quality bases) assembled on 2005-11-30

> BS03312.3prime
ATGGTCTAGAAAGCTTCTAGTCGCGTCCCACTTTGTGAGTGGCCACGGGC
TTATCCACCCGCACCACCCGTTCGGCTACGTTCAGGTAGGCCTCGTACTC
AACGATATCCGGCGTGGTGTCGTAATGGTAGTGACCGCCCCAGTTGCTGA
AGGAGAAGGAGTGGAAGTGCTGCAGGCGAAGGTCCAGGTCGTGCTCCTTG
GTCACCAGCGTGCCCACGGCGTTCAGCTGGGCGGGCATCTCGTAGAACTT
GAGCCACTCGTTCACCTCCTCGTCGCTGTTGATGGGCGTCTTGCTGAAGT
CCCGCATCACGTGCTGGTGGGCAGCGCCCTTCTTGATCAGAAAAATGCCA
CCCAGACCCACCACCTTGTCCCCGTAGTGGTTCTCCAGGCCCTTGCGGAT
GCACTCGATGAAGTTCTGTTCGCCAGTGCGCTGCTTGGCGGTGATTTTCA
ACACCTGACCAGGCTTGCCCTGGCTGAGGAAGAGGTTGAGAAGCAGGGCG
CACCTGGGCTCTGTGTGGGGTATCTTCTCCAGGACGCACTCCTCCTGCTC
TCCCCTCACAGTGGCCGTGTAGCTGCCGTTCGTGAGCTCATCCTTCTCGT
TCACGGACAAGTTGAAGATGCCCTCGCAGTTGGATCCCCGGATGGGCCAA
GGTCCCGCTCCGGCGCCCACGGCGAACACCGTGCCGGGGCCCTGGATCTT
TCGCGTGATCTCGGCGATGTTGTACAGCTTATCTCGCTGCACGAGGGGCA
GCAGAAAGGGTGGGCCTCCCGCCTCCAGCAGCGTGGGCTTGCCGCCCAGT
CCACTCTCCACCAGGCCGAACTGCTTGGCCTTCAGATCCGG

BS03312.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG9119-PA 969 CG9119-RA 145..969 841..17 4125 100 Minus
CG32335-PA 1086 CG32335-RA 853..908 250..195 155 91 Minus
CG32335-PA 1086 CG32335-RA 958..1032 145..71 150 88 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9119-RA 1212 CG9119-RA 301..1126 841..16 4130 100 Minus
CG32335-RB 1082 CG32335-RB 233..1014 823..42 1105 76.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:11:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1203402..1204227 16..841 4130 100 Plus
3L 28110227 3L 1201939..1202720 42..823 1090 76 Plus
Blast to na_te.dros performed on 2015-01-31 15:11:18 has no hits.

BS03312.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:23:06 Download gff for BS03312.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9119-PA 145..969 17..841 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:36:52 Download gff for BS03312.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9119-PA 145..969 17..841 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:24:36 Download gff for BS03312.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9119-RA 301..1137 3..841 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:40:50 Download gff for BS03312.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9119-RA 301..1137 3..841 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:40:50 Download gff for BS03312.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1203391..1204227 3..841 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:24:36 Download gff for BS03312.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1203391..1204227 3..841 99   Plus

BS03312.5prime Sequence

821 bp (705 high quality bases) assembled on 2005-11-30

> BS03312.5prime
GAAGTTATCAGTCGACATGAGCCAGAACCAACTGAGTACGGAGCAACTGC
TCTTCGAGGAGAAGCCGCTGTACGTGCCCCCATTGTCAGAGTTGCAGAAC
GTTATACAGGGTGCCCTGGCGGCCAACTTCGCCAATGTGAATGTCAGTGT
GGGCCCTTGTCCGGATCTGAAGGCCAAGCAGTTCGGCCTGGTGGAGAGTG
GACTGGGCGGCAAGCCCACGCTGCTGGAGGCGGGAGGCCCACCCTTTCTG
CTGCCCCTCGTGCAGCGAGATAAGCTGTACAACATCGCCGAGATCACGCG
AAAGATCCAGGGCCCCGGCACGGTGTTCGCCGTGGGCGCCGGAGCGGGAC
CTTGGCCCATCCGGGGATCCAACTGCGAGGGCATCTTCAACTTGTCCGTG
AACGAGAAGGATGAGCTCACGAACGGCAGCTACACGGCCACTGTGAGGGG
AGAGCAGGAGGAGTGCGTCCTGGAGAAGATACCCCACACAGAGCCCAGGT
GCGCCCTGCTTCTCAACCTCTTCCTCAGCCAGGGCAAGCCTGGTCAGGTG
TTGAAAATCACCGCCAAGCAGCGCACTGGCGAACAGAACTTCATCGAGTG
CATCCGCAAGGGCCTGGAGAACCACTACGGGGACAAGGTGGTGGGTCTGG
GTGGCATTTTTCTGATCAAGAAGGGCGCTGCCCACCAGCACGTGATGCGG
GACTTCAGCAAGACGCCCATCAACAGCGACGAGGAGGTGAACGAGTGGCT
CAAGTTCTACGAGATGCCCGCCCAGCTGACCGCCGTGGGCACGCTGGTGA
CCAAGGAGCACGACCTGGACC

BS03312.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:30:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG9119-PA 969 CG9119-RA 1..805 17..821 4000 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:28:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9119-RA 1212 CG9119-RA 157..961 17..821 4010 99.9 Plus
CG32335-RB 1082 CG32335-RB 92..861 38..807 820 74.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:28:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1203567..1204287 821..101 3590 99.9 Minus
3L 28110227 3L 1202092..1202758 807..141 785 74.5 Minus
3L 28110227 3L 1204555..1204639 101..17 425 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:28:19 has no hits.

BS03312.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:23:08 Download gff for BS03312.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9119-PA 1..805 17..821 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:36:53 Download gff for BS03312.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9119-PA 1..805 17..821 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:35:19 Download gff for BS03312.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9119-RA 149..961 9..821 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:48:52 Download gff for BS03312.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9119-RA 149..961 9..821 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:48:52 Download gff for BS03312.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1203567..1204286 102..821 99 <- Minus
3L 1204555..1204647 9..101 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:35:19 Download gff for BS03312.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1203567..1204286 102..821 99 <- Minus
arm_3L 1204555..1204647 9..101 95   Minus

BS03312.complete Sequence

1001 bp (1001 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634714

> BS03312.complete
GAAGTTATCAGTCGACATGAGCCAGAACCAACTGAGTACGGAGCAACTGC
TCTTCGAGGAGAAGCCGCTGTACGTGCCCCCATTGTCAGAGTTGCAGAAC
GTTATACAGGGTGCCCTGGCGGCCAACTTCGCCAATGTGAATGTCAGTGT
GGGCCCTTGTCCGGATCTGAAGGCCAAGCAGTTCGGCCTGGTGGAGAGTG
GACTGGGCGGCAAGCCCACGCTGCTGGAGGCGGGAGGCCCACCCTTTCTG
CTGCCCCTCGTGCAGCGAGATAAGCTGTACAACATCGCCGAGATCACGCG
AAAGATCCAGGGCCCCGGCACGGTGTTCGCCGTGGGCGCCGGAGCGGGAC
CTTGGCCCATCCGGGGATCCAACTGCGAGGGCATCTTCAACTTGTCCGTG
AACGAGAAGGATGAGCTCACGAACGGCAGCTACACGGCCACTGTGAGGGG
AGAGCAGGAGGAGTGCGTCCTGGAGAAGATACCCCACACAGAGCCCAGGT
GCGCCCTGCTTCTCAACCTCTTCCTCAGCCAGGGCAAGCCTGGTCAGGTG
TTGAAAATCACCGCCAAGCAGCGCACTGGCGAACAGAACTTCATCGAGTG
CATCCGCAAGGGCCTGGAGAACCACTACGGGGACAAGGTGGTGGGTCTGG
GTGGCATTTTTCTGATCAAGAAGGGCGCTGCCCACCAGCACGTGATGCGG
GACTTCAGCAAGACGCCCATCAACAGCGACGAGGAGGTGAACGAGTGGCT
CAAGTTCTACGAGATGCCCGCCCAGCTGAACGCCGTGGGCACGCTGGTGA
CCAAGGAGCACGACCTGGACCTTCGCCTGCAGCACTTCCACTCCTTCTCC
TTCAGCAACTGGGGCGGTCACTACCATTACGACACCACGCCGGATATCGT
TGAGTACGAGGCCTACCTGAACGTAGCCGAACGGGTGGTGCGGGTGGATA
AGCCCGTGGCCACTCACAAAGTGGGACGCGACTAGAAGCTTTCTAGACCA
T

BS03312.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9119-RA 969 CG9119-PA 1..969 17..985 4845 100 Plus
CG32335-RB 969 CG32335-PB 22..944 38..960 1135 74.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG9119-RA 1212 CG9119-RA 157..1126 17..986 4850 100 Plus
CG32335-RB 1082 CG32335-RB 92..1014 38..960 1135 74.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1203402..1204287 986..101 4430 100 Minus
3L 28110227 3L 1201939..1202758 960..141 1115 75.7 Minus
3L 28110227 3L 1204555..1204639 101..17 425 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:45:16 has no hits.

BS03312.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:47 Download gff for BS03312.complete
Subject Subject Range Query Range Percent Splice Strand
CG9119-RA 1..969 17..985 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:18:17 Download gff for BS03312.complete
Subject Subject Range Query Range Percent Splice Strand
CG9119-RA 146..1134 9..999 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:31 Download gff for BS03312.complete
Subject Subject Range Query Range Percent Splice Strand
CG9119-RA 157..1125 17..985 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:47 Download gff for BS03312.complete
Subject Subject Range Query Range Percent Splice Strand
CG9119-RA 146..1134 9..999 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:03 Download gff for BS03312.complete
Subject Subject Range Query Range Percent Splice Strand
CG9119-RA 157..1125 17..985 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:03 Download gff for BS03312.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1203403..1204286 102..985 100 <- Minus
3L 1204555..1204639 17..101 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:31 Download gff for BS03312.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1203403..1204286 102..985 100 <- Minus
arm_3L 1204555..1204639 17..101 100   Minus

BS03312.pep Sequence

Translation from 16 to 984

> BS03312.pep
MSQNQLSTEQLLFEEKPLYVPPLSELQNVIQGALAANFANVNVSVGPCPD
LKAKQFGLVESGLGGKPTLLEAGGPPFLLPLVQRDKLYNIAEITRKIQGP
GTVFAVGAGAGPWPIRGSNCEGIFNLSVNEKDELTNGSYTATVRGEQEEC
VLEKIPHTEPRCALLLNLFLSQGKPGQVLKITAKQRTGEQNFIECIRKGL
ENHYGDKVVGLGGIFLIKKGAAHQHVMRDFSKTPINSDEEVNEWLKFYEM
PAQLNAVGTLVTKEHDLDLRLQHFHSFSFSNWGGHYHYDTTPDIVEYEAY
LNVAERVVRVDKPVATHKVGRD*

BS03312.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG9119-PA 322 CG9119-PA 1..322 1..322 1699 100 Plus
CG32335-PB 322 CG32335-PB 1..322 1..322 1350 76.7 Plus