Clone Sequence Records
BS03319.3prime Sequence
842 bp (799 high quality bases) assembled on 2005-11-30
> BS03319.3prime
ATGGTCTAGAAAGCTTCTATAGGGGTTCCTGCTGAAAGTAATCGTGCTCC
AAACAGGCCAAGGCGGATGGTCGCAGGTGGAGGTCGTAGGAAAGCATTTT
ATTCAACAGATCATCGGCGTACTTGCACAGGTGTGGGCAAAAGTCTTTTG
GTCTCTTTGGATGCCGCTGGGGAAAGTGTTCCAGGGCCACGGAAATGGTC
TGTGGCCACTGTTGCTCGGTGGGTCTACCGGTCAGTTCGAAGATGCGGTC
CAGCTGATTCTTTTCGGAGGTGCCCGGGAATAGGGCGCGCCGATTGAACA
TCTCGAAGATGATGCAGGCGGCACTCCAGATGTCCACGGTGCTGTTGTAG
GGCTGGGCGAGCAGAACCTCGGGTGCGCGGTACCACAAGGTGACCACCAC
GGAGGTGAGCTTCATCTCCGAACCGTAGGTCTTGGCCAAGCCAAAGTCGG
CGATCTTGAGGTGGCCCTGCGAGGAGACCAGCAGGTTTTGCGGCTTAAGA
TCCCGATGGATGATACGGTGTGAGTGTAAGAAGTCCACACCGGTCAGTAG
TTCCCTTGACAAGCGCTGAATTGTGGGCGGCGACATGCCCGATTTGGGAA
GTCTGTCTATAAGATCCGAAAGATCCTGCTCCACATGTTCGAAAACCAAC
AGAATCAGCAATTGGCCGTCGCGCTCCAGAAACTGGCATACTTCGTACAG
TTTGACAATATTCGCATGATTGCTGGCATTCAGCTGCTTCAGCAGCGAAA
TCTCCCGCAGCGTGGACATTGGCACACCGTTCTCGTTCAGCGATATCCTA
ACCTTCTTCAGCGCCACTATGTTGCCGGTGATCACATCGCGG
BS03319.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:30:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5072-PC | 954 | Cdk4-RC | 129..954 | 842..17 | 4130 | 100 | Minus |
CG5072-PA | 954 | Cdk4-RA | 129..954 | 842..17 | 4130 | 100 | Minus |
CG5072-PB | 954 | Cdk4-RB | 129..954 | 842..17 | 4130 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:48:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk4-RE | 1600 | CG5072-RE | 362..1187 | 842..17 | 4130 | 100 | Minus |
Cdk4-RD | 1447 | CG5072-RD | 209..1034 | 842..17 | 4130 | 100 | Minus |
Cdk4-RB | 2026 | CG5072-RB | 788..1613 | 842..17 | 4130 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:48:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16584347..16584678 | 568..237 | 1660 | 100 | Minus |
2R | 25286936 | 2R | 16582896..16583036 | 842..702 | 705 | 100 | Minus |
2R | 25286936 | 2R | 16584148..16584287 | 705..566 | 685 | 99.3 | Minus |
2R | 25286936 | 2R | 16584744..16584879 | 236..101 | 680 | 100 | Minus |
2R | 25286936 | 2R | 16584952..16585035 | 100..17 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 08:48:38 has no hits.
BS03319.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:23:20 Download gff for
BS03319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk4-PA | 129..954 | 17..842 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:37:11 Download gff for
BS03319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5072-PB | 129..954 | 17..842 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:11:00 Download gff for
BS03319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk4-RA | 563..1391 | 12..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:51:37 Download gff for
BS03319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk4-RB | 788..1616 | 12..842 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 11:51:37 Download gff for
BS03319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16582896..16583036 | 702..842 | 100 | -> | Minus |
2R | 16584152..16584287 | 566..701 | 100 | -> | Minus |
2R | 16584350..16584678 | 237..565 | 100 | -> | Minus |
2R | 16584744..16584879 | 101..236 | 100 | -> | Minus |
2R | 16584952..16585038 | 12..100 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:11:00 Download gff for
BS03319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12470401..12470541 | 702..842 | 100 | -> | Minus |
arm_2R | 12471657..12471792 | 566..701 | 100 | -> | Minus |
arm_2R | 12471855..12472183 | 237..565 | 100 | -> | Minus |
arm_2R | 12472249..12472384 | 101..236 | 100 | -> | Minus |
arm_2R | 12472457..12472543 | 12..100 | 96 | | Minus |
BS03319.5prime Sequence
880 bp (777 high quality bases) assembled on 2005-11-30
> BS03319.5prime
GAAGTTATCAGTCGACATGTCATATGTACGCCAGCTGAAGCGGCAGAAAA
TGTCCCAGGCGAAGAAGTTCGGCGATGGCGATCCGTTCAACTACCAGGAG
CTCAACATCATCGGCGAAGGTGCCTATGGAACGGTTTACAGAGCCCGCGA
TGTGATCACCGGCAACATAGTGGCGCTGAAGAAGGTTAGGATATCGCTGA
ACGAGAACGGTGTGCCAATGTCCACGCTGCGGGAGATTTCGCTGCTGAAG
CAGCTGAATGCCAGCAATCATGCGAATATTGTCAAACTGTACGAAGTATG
CCAGTTTCTGGAGCGCGACGGCCAATTGCTGATTCTGTTGGTTTTCGAAC
ATGTGGAGCAGGATCTTTCGGATCTTATAGACAGACTTCCCAAATCGGGC
ATGTCGCCGCCCACAATTCAGCGCTTGTCAAGGGAACTACTGACCGGTGT
GGACTTCTTACACTCACACCGTATCATCCATCGGGATCTTAAGCCGCAAA
ACCTGCTGGTCTCCTCGCAGGGCCACCTCAAGATCGCCGACTTTGGCTTG
GCCAAGACCTACGGTTCGGAGATGAAGCTCACCTCCGTGGTGGTCACCTT
GTGGTACCGCGCACCCGAGGTTCTGCTCGCCCAGCCCTACAACAGCACCG
TGGACATCTGGAGTGCCGCCTGCATCATCTTCGAGATGTTCAATCGGCGC
GCCCTATTCCCGGGCACCTCCGAAAAGAATCAGCTGGACCGCATCTTCGA
ACTGACCGGTAGACCCACCGAGCAACAGTGGCCACAGACCATTTCCGTGG
GCCTGGAACACTTTCCCCAGCGGCATCCAAAGAGACAAAAAGACTTTTGC
CCCCACCTGTGCCAGTACGCCGATGATCTG
BS03319.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:30:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5072-PC | 954 | Cdk4-RC | 1..864 | 17..880 | 4220 | 99.5 | Plus |
CG5072-PA | 954 | Cdk4-RA | 1..864 | 17..880 | 4220 | 99.5 | Plus |
CG5072-PB | 954 | Cdk4-RB | 1..864 | 17..880 | 4220 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:18:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk4-RE | 1600 | CG5072-RE | 234..1097 | 17..880 | 4260 | 99.5 | Plus |
Cdk4-RD | 1447 | CG5072-RD | 81..944 | 17..880 | 4260 | 99.5 | Plus |
Cdk4-RB | 2026 | CG5072-RB | 660..1523 | 17..880 | 4260 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:18:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16584347..16584678 | 419..750 | 1660 | 100 | Plus |
2R | 25286936 | 2R | 16582869..16583036 | 118..285 | 840 | 100 | Plus |
2R | 25286936 | 2R | 16584148..16584287 | 282..421 | 685 | 99.3 | Plus |
2R | 25286936 | 2R | 16584744..16584873 | 751..880 | 590 | 96.9 | Plus |
2R | 25286936 | 2R | 16580913..16581018 | 17..122 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:18:38 has no hits.
BS03319.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:23:21 Download gff for
BS03319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk4-PA | 1..864 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:37:12 Download gff for
BS03319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5072-PB | 1..864 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:47:16 Download gff for
BS03319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk4-RA | 428..1298 | 9..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:04:50 Download gff for
BS03319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk4-RB | 653..1523 | 9..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:04:50 Download gff for
BS03319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16584152..16584287 | 286..421 | 100 | -> | Plus |
2R | 16580906..16581015 | 9..119 | 97 | -> | Plus |
2R | 16582871..16583036 | 120..285 | 100 | -> | Plus |
2R | 16584350..16584678 | 422..750 | 100 | -> | Plus |
2R | 16584744..16584873 | 751..880 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:47:16 Download gff for
BS03319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12468411..12468520 | 9..119 | 97 | -> | Plus |
arm_2R | 12470376..12470541 | 120..285 | 100 | -> | Plus |
arm_2R | 12471657..12471792 | 286..421 | 100 | -> | Plus |
arm_2R | 12471855..12472183 | 422..750 | 100 | -> | Plus |
arm_2R | 12472249..12472378 | 751..880 | 96 | | Plus |
BS03319.complete Sequence
986 bp (986 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ638770
> BS03319.complete
GAAGTTATCAGTCGACATGTCATATGTACGCCAGCTGAAGCGGCAGAAAA
TGTCCCAGGCGAAGAAGTTCGGCGATGGCGATCCGTTCAACTACCAGGAG
CTCAACATCATCGGCGAAGGTGCCTATGGAACGGTTTACAGAGCCCGCGA
TGTGATCACCGGCAACATAGTGGCGCTGAAGAAGGTTAGGATATCGCTGA
ACGAGAACGGTGTGCCAATGTCCACGCTGCGGGAGATTTCGCTGCTGAAG
CAGCTGAATGCCAGCAATCATGCGAATATTGTCAAACTGTACGAAGTATG
CCAGTTTCTGGAGCGCGACGGCCAATTGCTGATTCTGTTGGTTTTCGAAC
ATGTGGAGCAGGATCTTTCGGATCTTATAGACAGACTTCCCAAATCGGGC
ATGTCGCCGCCCACAATTCAGCGCTTGTCAAGGGAACTACTGACCGGTGT
GGACTTCTTACACTCACACCGTATCATCCATCGGGATCTTAAGCCGCAAA
ACCTGCTGGTCTCCTCGCAGGGCCACCTCAAGATCGCCGACTTTGGCTTG
GCCAAGACCTACGGTTCGGAGATGAAGCTCACCTCCGTGGTGGTCACCTT
GTGGTACCGCGCACCCGAGGTTCTGCTCGCCCAGCCCTACAACAGCACCG
TGGACATCTGGAGTGCCGCCTGCATCATCTTCGAGATGTTCAATCGGCGC
GCCCTATTCCCGGGCACCTCCGAAAAGAATCAGCTGGACCGCATCTTCGA
ACTGACCGGTAGACCCACCGAGCAACAGTGGCCACAGACCATTTCCGTGG
CCCTGGAACACTTTCCCCAGCGGCATCCAAAGAGACCAAAAGACTTTTGC
CCACACCTGTGCAAGTACGCCGATGATCTGTTGAATAAAATGCTTTCCTA
CGACCTCCACCTGCGACCATCCGCCTTGGCCTGTTTGGAGCACGATTACT
TTCAGCAGGAACCCCTATAGAAGCTTTCTAGACCAT
BS03319.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:58:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk4-RE | 954 | CG5072-PE | 1..954 | 17..970 | 4770 | 100 | Plus |
Cdk4-RD | 954 | CG5072-PD | 1..954 | 17..970 | 4770 | 100 | Plus |
Cdk4-RB | 954 | CG5072-PB | 1..954 | 17..970 | 4770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:58:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk4-RE | 1600 | CG5072-RE | 234..1187 | 17..970 | 4770 | 100 | Plus |
Cdk4-RD | 1447 | CG5072-RD | 81..1034 | 17..970 | 4770 | 100 | Plus |
Cdk4-RB | 2026 | CG5072-RB | 660..1613 | 17..970 | 4770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:58:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16584347..16584678 | 419..750 | 1660 | 100 | Plus |
2R | 25286936 | 2R | 16582869..16583036 | 118..285 | 840 | 100 | Plus |
2R | 25286936 | 2R | 16584148..16584287 | 282..421 | 685 | 99.3 | Plus |
2R | 25286936 | 2R | 16584744..16584879 | 751..886 | 680 | 100 | Plus |
2R | 25286936 | 2R | 16580913..16581018 | 17..122 | 530 | 100 | Plus |
2R | 25286936 | 2R | 16584952..16585035 | 887..970 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:58:06 has no hits.
BS03319.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:50 Download gff for
BS03319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk4-RB | 1..954 | 17..970 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:18:22 Download gff for
BS03319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk4-RB | 635..1598 | 9..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:17 Download gff for
BS03319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk4-RA | 435..1388 | 17..970 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:50 Download gff for
BS03319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk4-RB | 635..1598 | 9..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:29:42 Download gff for
BS03319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk4-RB | 660..1613 | 17..970 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:29:42 Download gff for
BS03319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16580913..16581015 | 17..119 | 100 | -> | Plus |
2R | 16582871..16583036 | 120..285 | 100 | -> | Plus |
2R | 16584152..16584287 | 286..421 | 100 | -> | Plus |
2R | 16584350..16584678 | 422..750 | 100 | -> | Plus |
2R | 16584744..16584879 | 751..886 | 100 | -> | Plus |
2R | 16584952..16585035 | 887..970 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:17 Download gff for
BS03319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12468418..12468520 | 17..119 | 100 | -> | Plus |
arm_2R | 12470376..12470541 | 120..285 | 100 | -> | Plus |
arm_2R | 12471657..12471792 | 286..421 | 100 | -> | Plus |
arm_2R | 12471855..12472183 | 422..750 | 100 | -> | Plus |
arm_2R | 12472249..12472384 | 751..886 | 100 | -> | Plus |
arm_2R | 12472457..12472540 | 887..970 | 100 | | Plus |
BS03319.pep Sequence
Translation from 16 to 969
> BS03319.pep
MSYVRQLKRQKMSQAKKFGDGDPFNYQELNIIGEGAYGTVYRARDVITGN
IVALKKVRISLNENGVPMSTLREISLLKQLNASNHANIVKLYEVCQFLER
DGQLLILLVFEHVEQDLSDLIDRLPKSGMSPPTIQRLSRELLTGVDFLHS
HRIIHRDLKPQNLLVSSQGHLKIADFGLAKTYGSEMKLTSVVVTLWYRAP
EVLLAQPYNSTVDIWSAACIIFEMFNRRALFPGTSEKNQLDRIFELTGRP
TEQQWPQTISVALEHFPQRHPKRPKDFCPHLCKYADDLLNKMLSYDLHLR
PSALACLEHDYFQQEPL*
BS03319.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk4-PE | 317 | CG5072-PE | 1..317 | 1..317 | 1653 | 100 | Plus |
Cdk4-PD | 317 | CG5072-PD | 1..317 | 1..317 | 1653 | 100 | Plus |
Cdk4-PB | 317 | CG5072-PB | 1..317 | 1..317 | 1653 | 100 | Plus |
Cdk4-PA | 317 | CG5072-PA | 1..317 | 1..317 | 1653 | 100 | Plus |
Cdk4-PC | 317 | CG5072-PC | 1..317 | 1..317 | 1653 | 100 | Plus |