Clone BS03319 Report

Search the DGRC for BS03319

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:33
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptCdk4-RA
Protein status:BS03319.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03319.3prime Sequence

842 bp (799 high quality bases) assembled on 2005-11-30

> BS03319.3prime
ATGGTCTAGAAAGCTTCTATAGGGGTTCCTGCTGAAAGTAATCGTGCTCC
AAACAGGCCAAGGCGGATGGTCGCAGGTGGAGGTCGTAGGAAAGCATTTT
ATTCAACAGATCATCGGCGTACTTGCACAGGTGTGGGCAAAAGTCTTTTG
GTCTCTTTGGATGCCGCTGGGGAAAGTGTTCCAGGGCCACGGAAATGGTC
TGTGGCCACTGTTGCTCGGTGGGTCTACCGGTCAGTTCGAAGATGCGGTC
CAGCTGATTCTTTTCGGAGGTGCCCGGGAATAGGGCGCGCCGATTGAACA
TCTCGAAGATGATGCAGGCGGCACTCCAGATGTCCACGGTGCTGTTGTAG
GGCTGGGCGAGCAGAACCTCGGGTGCGCGGTACCACAAGGTGACCACCAC
GGAGGTGAGCTTCATCTCCGAACCGTAGGTCTTGGCCAAGCCAAAGTCGG
CGATCTTGAGGTGGCCCTGCGAGGAGACCAGCAGGTTTTGCGGCTTAAGA
TCCCGATGGATGATACGGTGTGAGTGTAAGAAGTCCACACCGGTCAGTAG
TTCCCTTGACAAGCGCTGAATTGTGGGCGGCGACATGCCCGATTTGGGAA
GTCTGTCTATAAGATCCGAAAGATCCTGCTCCACATGTTCGAAAACCAAC
AGAATCAGCAATTGGCCGTCGCGCTCCAGAAACTGGCATACTTCGTACAG
TTTGACAATATTCGCATGATTGCTGGCATTCAGCTGCTTCAGCAGCGAAA
TCTCCCGCAGCGTGGACATTGGCACACCGTTCTCGTTCAGCGATATCCTA
ACCTTCTTCAGCGCCACTATGTTGCCGGTGATCACATCGCGG

BS03319.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:30:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5072-PC 954 Cdk4-RC 129..954 842..17 4130 100 Minus
CG5072-PA 954 Cdk4-RA 129..954 842..17 4130 100 Minus
CG5072-PB 954 Cdk4-RB 129..954 842..17 4130 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk4-RE 1600 CG5072-RE 362..1187 842..17 4130 100 Minus
Cdk4-RD 1447 CG5072-RD 209..1034 842..17 4130 100 Minus
Cdk4-RB 2026 CG5072-RB 788..1613 842..17 4130 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:48:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16584347..16584678 568..237 1660 100 Minus
2R 25286936 2R 16582896..16583036 842..702 705 100 Minus
2R 25286936 2R 16584148..16584287 705..566 685 99.3 Minus
2R 25286936 2R 16584744..16584879 236..101 680 100 Minus
2R 25286936 2R 16584952..16585035 100..17 420 100 Minus
Blast to na_te.dros performed on 2015-02-01 08:48:38 has no hits.

BS03319.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:23:20 Download gff for BS03319.3prime
Subject Subject Range Query Range Percent Splice Strand
Cdk4-PA 129..954 17..842 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:37:11 Download gff for BS03319.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5072-PB 129..954 17..842 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:11:00 Download gff for BS03319.3prime
Subject Subject Range Query Range Percent Splice Strand
Cdk4-RA 563..1391 12..842 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:51:37 Download gff for BS03319.3prime
Subject Subject Range Query Range Percent Splice Strand
Cdk4-RB 788..1616 12..842 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 11:51:37 Download gff for BS03319.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16582896..16583036 702..842 100 -> Minus
2R 16584152..16584287 566..701 100 -> Minus
2R 16584350..16584678 237..565 100 -> Minus
2R 16584744..16584879 101..236 100 -> Minus
2R 16584952..16585038 12..100 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:11:00 Download gff for BS03319.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12470401..12470541 702..842 100 -> Minus
arm_2R 12471657..12471792 566..701 100 -> Minus
arm_2R 12471855..12472183 237..565 100 -> Minus
arm_2R 12472249..12472384 101..236 100 -> Minus
arm_2R 12472457..12472543 12..100 96   Minus

BS03319.5prime Sequence

880 bp (777 high quality bases) assembled on 2005-11-30

> BS03319.5prime
GAAGTTATCAGTCGACATGTCATATGTACGCCAGCTGAAGCGGCAGAAAA
TGTCCCAGGCGAAGAAGTTCGGCGATGGCGATCCGTTCAACTACCAGGAG
CTCAACATCATCGGCGAAGGTGCCTATGGAACGGTTTACAGAGCCCGCGA
TGTGATCACCGGCAACATAGTGGCGCTGAAGAAGGTTAGGATATCGCTGA
ACGAGAACGGTGTGCCAATGTCCACGCTGCGGGAGATTTCGCTGCTGAAG
CAGCTGAATGCCAGCAATCATGCGAATATTGTCAAACTGTACGAAGTATG
CCAGTTTCTGGAGCGCGACGGCCAATTGCTGATTCTGTTGGTTTTCGAAC
ATGTGGAGCAGGATCTTTCGGATCTTATAGACAGACTTCCCAAATCGGGC
ATGTCGCCGCCCACAATTCAGCGCTTGTCAAGGGAACTACTGACCGGTGT
GGACTTCTTACACTCACACCGTATCATCCATCGGGATCTTAAGCCGCAAA
ACCTGCTGGTCTCCTCGCAGGGCCACCTCAAGATCGCCGACTTTGGCTTG
GCCAAGACCTACGGTTCGGAGATGAAGCTCACCTCCGTGGTGGTCACCTT
GTGGTACCGCGCACCCGAGGTTCTGCTCGCCCAGCCCTACAACAGCACCG
TGGACATCTGGAGTGCCGCCTGCATCATCTTCGAGATGTTCAATCGGCGC
GCCCTATTCCCGGGCACCTCCGAAAAGAATCAGCTGGACCGCATCTTCGA
ACTGACCGGTAGACCCACCGAGCAACAGTGGCCACAGACCATTTCCGTGG
GCCTGGAACACTTTCCCCAGCGGCATCCAAAGAGACAAAAAGACTTTTGC
CCCCACCTGTGCCAGTACGCCGATGATCTG

BS03319.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:30:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5072-PC 954 Cdk4-RC 1..864 17..880 4220 99.5 Plus
CG5072-PA 954 Cdk4-RA 1..864 17..880 4220 99.5 Plus
CG5072-PB 954 Cdk4-RB 1..864 17..880 4220 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:18:42
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk4-RE 1600 CG5072-RE 234..1097 17..880 4260 99.5 Plus
Cdk4-RD 1447 CG5072-RD 81..944 17..880 4260 99.5 Plus
Cdk4-RB 2026 CG5072-RB 660..1523 17..880 4260 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16584347..16584678 419..750 1660 100 Plus
2R 25286936 2R 16582869..16583036 118..285 840 100 Plus
2R 25286936 2R 16584148..16584287 282..421 685 99.3 Plus
2R 25286936 2R 16584744..16584873 751..880 590 96.9 Plus
2R 25286936 2R 16580913..16581018 17..122 530 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:18:38 has no hits.

BS03319.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:23:21 Download gff for BS03319.5prime
Subject Subject Range Query Range Percent Splice Strand
Cdk4-PA 1..864 17..880 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:37:12 Download gff for BS03319.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5072-PB 1..864 17..880 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:47:16 Download gff for BS03319.5prime
Subject Subject Range Query Range Percent Splice Strand
Cdk4-RA 428..1298 9..880 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:04:50 Download gff for BS03319.5prime
Subject Subject Range Query Range Percent Splice Strand
Cdk4-RB 653..1523 9..880 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:04:50 Download gff for BS03319.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16584152..16584287 286..421 100 -> Plus
2R 16580906..16581015 9..119 97 -> Plus
2R 16582871..16583036 120..285 100 -> Plus
2R 16584350..16584678 422..750 100 -> Plus
2R 16584744..16584873 751..880 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:47:16 Download gff for BS03319.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12468411..12468520 9..119 97 -> Plus
arm_2R 12470376..12470541 120..285 100 -> Plus
arm_2R 12471657..12471792 286..421 100 -> Plus
arm_2R 12471855..12472183 422..750 100 -> Plus
arm_2R 12472249..12472378 751..880 96   Plus

BS03319.complete Sequence

986 bp (986 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ638770

> BS03319.complete
GAAGTTATCAGTCGACATGTCATATGTACGCCAGCTGAAGCGGCAGAAAA
TGTCCCAGGCGAAGAAGTTCGGCGATGGCGATCCGTTCAACTACCAGGAG
CTCAACATCATCGGCGAAGGTGCCTATGGAACGGTTTACAGAGCCCGCGA
TGTGATCACCGGCAACATAGTGGCGCTGAAGAAGGTTAGGATATCGCTGA
ACGAGAACGGTGTGCCAATGTCCACGCTGCGGGAGATTTCGCTGCTGAAG
CAGCTGAATGCCAGCAATCATGCGAATATTGTCAAACTGTACGAAGTATG
CCAGTTTCTGGAGCGCGACGGCCAATTGCTGATTCTGTTGGTTTTCGAAC
ATGTGGAGCAGGATCTTTCGGATCTTATAGACAGACTTCCCAAATCGGGC
ATGTCGCCGCCCACAATTCAGCGCTTGTCAAGGGAACTACTGACCGGTGT
GGACTTCTTACACTCACACCGTATCATCCATCGGGATCTTAAGCCGCAAA
ACCTGCTGGTCTCCTCGCAGGGCCACCTCAAGATCGCCGACTTTGGCTTG
GCCAAGACCTACGGTTCGGAGATGAAGCTCACCTCCGTGGTGGTCACCTT
GTGGTACCGCGCACCCGAGGTTCTGCTCGCCCAGCCCTACAACAGCACCG
TGGACATCTGGAGTGCCGCCTGCATCATCTTCGAGATGTTCAATCGGCGC
GCCCTATTCCCGGGCACCTCCGAAAAGAATCAGCTGGACCGCATCTTCGA
ACTGACCGGTAGACCCACCGAGCAACAGTGGCCACAGACCATTTCCGTGG
CCCTGGAACACTTTCCCCAGCGGCATCCAAAGAGACCAAAAGACTTTTGC
CCACACCTGTGCAAGTACGCCGATGATCTGTTGAATAAAATGCTTTCCTA
CGACCTCCACCTGCGACCATCCGCCTTGGCCTGTTTGGAGCACGATTACT
TTCAGCAGGAACCCCTATAGAAGCTTTCTAGACCAT

BS03319.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk4-RE 954 CG5072-PE 1..954 17..970 4770 100 Plus
Cdk4-RD 954 CG5072-PD 1..954 17..970 4770 100 Plus
Cdk4-RB 954 CG5072-PB 1..954 17..970 4770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:58:08
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk4-RE 1600 CG5072-RE 234..1187 17..970 4770 100 Plus
Cdk4-RD 1447 CG5072-RD 81..1034 17..970 4770 100 Plus
Cdk4-RB 2026 CG5072-RB 660..1613 17..970 4770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:58:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16584347..16584678 419..750 1660 100 Plus
2R 25286936 2R 16582869..16583036 118..285 840 100 Plus
2R 25286936 2R 16584148..16584287 282..421 685 99.3 Plus
2R 25286936 2R 16584744..16584879 751..886 680 100 Plus
2R 25286936 2R 16580913..16581018 17..122 530 100 Plus
2R 25286936 2R 16584952..16585035 887..970 420 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:58:06 has no hits.

BS03319.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:50 Download gff for BS03319.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk4-RB 1..954 17..970 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:18:22 Download gff for BS03319.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk4-RB 635..1598 9..975 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:17 Download gff for BS03319.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk4-RA 435..1388 17..970 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:50 Download gff for BS03319.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk4-RB 635..1598 9..975 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:29:42 Download gff for BS03319.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk4-RB 660..1613 17..970 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:29:42 Download gff for BS03319.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16580913..16581015 17..119 100 -> Plus
2R 16582871..16583036 120..285 100 -> Plus
2R 16584152..16584287 286..421 100 -> Plus
2R 16584350..16584678 422..750 100 -> Plus
2R 16584744..16584879 751..886 100 -> Plus
2R 16584952..16585035 887..970 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:17 Download gff for BS03319.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12468418..12468520 17..119 100 -> Plus
arm_2R 12470376..12470541 120..285 100 -> Plus
arm_2R 12471657..12471792 286..421 100 -> Plus
arm_2R 12471855..12472183 422..750 100 -> Plus
arm_2R 12472249..12472384 751..886 100 -> Plus
arm_2R 12472457..12472540 887..970 100   Plus

BS03319.pep Sequence

Translation from 16 to 969

> BS03319.pep
MSYVRQLKRQKMSQAKKFGDGDPFNYQELNIIGEGAYGTVYRARDVITGN
IVALKKVRISLNENGVPMSTLREISLLKQLNASNHANIVKLYEVCQFLER
DGQLLILLVFEHVEQDLSDLIDRLPKSGMSPPTIQRLSRELLTGVDFLHS
HRIIHRDLKPQNLLVSSQGHLKIADFGLAKTYGSEMKLTSVVVTLWYRAP
EVLLAQPYNSTVDIWSAACIIFEMFNRRALFPGTSEKNQLDRIFELTGRP
TEQQWPQTISVALEHFPQRHPKRPKDFCPHLCKYADDLLNKMLSYDLHLR
PSALACLEHDYFQQEPL*

BS03319.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk4-PE 317 CG5072-PE 1..317 1..317 1653 100 Plus
Cdk4-PD 317 CG5072-PD 1..317 1..317 1653 100 Plus
Cdk4-PB 317 CG5072-PB 1..317 1..317 1653 100 Plus
Cdk4-PA 317 CG5072-PA 1..317 1..317 1653 100 Plus
Cdk4-PC 317 CG5072-PC 1..317 1..317 1653 100 Plus