BS03330.3prime Sequence
797 bp (764 high quality bases) assembled on 2005-11-30
> BS03330.3prime
ATGGTCTAGAAAGCTTTCTGAGTTCGTCGTGCAGATTCTCCGATTCGGAC
TGGAAAGCTTCGCTGTCGCAGGCGGCGGGAGTTTCGAATTCAAAGTAGTA
TTCACAGCGATTGGGCTCGCTGACGGCAGTGATTTTGGGTTCCAGGGCAC
AACTAATGTTGATGATGGCCGAACGGTTTGGACCATTCCAGCAGGCAGCA
CCATTGGTGTACTTTTGTTGGGAATATTGCTTTGGCTCTCCACTCCATTT
GTCCCAGCGACCCAGCGTGGTTTCAGGCCCACCGCTCCTCGACTTCTGGG
AGGCCCGATCGAAGGGACAAAGGGTGTACACATACTCCCGATCTTCGAAA
TTGTAGCACTGGCCATCGTGCACGGCCCACTCCTCGGTCAGGCCGTAGCC
CTTGTTGTTCTGGTCGTCGATCTCGTTAACCTCCTGCTGAATCTCGCGCA
GGCTGCGCTCCACTTCCTCGAGAGCATTTCGCGCCTCATTGGCCTGCTGG
ATCAAACGCTGCGTCTCCGGATCGTAGTTAGGTGGCGTGGCTTCTTCCGC
ATCCGGAGAGGCTTCGCCAACGCCCACATCGGGTTCCTCATCATCGTACT
GATCCTCCTCACCCTCTTCGTCGGCTTCAATATCATCATCGCCGGCGAGT
TCAGCTTGTTCTTCGCTTAGCTTTGGTGGAGTGGGCTGGATCGACTCGGT
GGTGACCTCTGGCTGCTGGGCAACTTCCTCCGGCTGCGGCGGCTGGAACA
GACCCTCGGCCAGCATTTGCAGAGACTTAATACGCGGCCAGGCCAGC
BS03330.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:30:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6453-PA | 1647 | CG6453-RA | 867..1644 | 797..20 | 3890 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:42:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6453-RB | 2045 | CG6453-RB | 1016..1798 | 797..15 | 3900 | 99.9 | Minus |
| CG6453-RA | 2255 | CG6453-RA | 1016..1798 | 797..15 | 3900 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:42:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17482445..17483092 | 15..662 | 3225 | 99.8 | Plus |
| 2L | 23513712 | 2L | 17483156..17483292 | 661..797 | 685 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 18:42:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| baggins | 5453 | baggins BAGGINS 5453bp | 1589..1632 | 607..564 | 112 | 72.7 | Minus |
| invader2 | 5124 | invader2 INVADER2 5124bp | 3222..3279 | 317..374 | 110 | 65.5 | Plus |
BS03330.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:23:40 Download gff for
BS03330.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6453-PA | 867..1647 | 17..797 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:37:38 Download gff for
BS03330.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6453-PA | 867..1647 | 17..797 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:49:56 Download gff for
BS03330.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6453-RA | 1016..1802 | 11..797 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:34:09 Download gff for
BS03330.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6453-RA | 1016..1802 | 11..797 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:34:09 Download gff for
BS03330.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17482441..17483090 | 11..660 | 99 | <- | Plus |
| 2L | 17483156..17483292 | 661..797 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:49:56 Download gff for
BS03330.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17482441..17483090 | 11..660 | 99 | <- | Plus |
| arm_2L | 17483156..17483292 | 661..797 | 100 | | Plus |
BS03330.5prime Sequence
756 bp (740 high quality bases) assembled on 2005-11-30
> BS03330.5prime
GAAGTTATCAGTCGACATGCAAAGCTTGCAACTTAGCCAAGTGCTGCTAA
TACCGCTCCTGCTGGCCCTGGTGGCCACCAACGTAGGCTCTGCCAGCGAA
GTTCCACGTCCGCTGGGTGTTCCGCTGGCCAAGGCTTCACTGTACCAACC
TCGGGCGGGCGAAAACAGTTGGACCTGCTTGGATGGCAGCCGCACCATAC
CCTTCTCCCACATCAACGACGATTACTGCGACTGTGCGGATGGAAGCGAT
GAACCTGGCACTGCGGCCTGTCCGCAGGGCCAGTTCCATTGTGTGAACAA
AGGCCACCAGCCGGTAAATATACCCAGTTCGCAGGTGCAGGACGGCATCT
GTGACTGCTGCGATGGCAGTGACGAGTCAGAGACGGTCGGTTGCCCGAAT
ACCTGCTTGGAACTCGGAGCAGCGGCGGCTGTCCAAAGGCGGAATGCAGC
GGAGCTGCACAAACGTGGAGCTGAGCGGCGACAGGAGATGATTACCCGTG
GCAAGCAGATGAGGGCCGAGCGAGAGGCGCGCCGCCTTGAGCTAGATCAA
CGACGCAAGGAACAGGAACTGCTGCGCGCCGAAAAGGAGCAGCTCAAGCA
AACCGCTGAGGCTCTAGAGGCAGAAGCCATTGAAATCTTTAAGGAGCAAC
AGCGCGAGGTGGATGCTGACACCGCACAGGCGGAGCGGGAGCCGCAACAG
ATGCGCCAAGAGGCCACGCTCACCTTTGTGCGCTACGACACCAACAAAGA
TGGCTT
BS03330.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:30:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6453-PA | 1647 | CG6453-RA | 1..740 | 17..756 | 3700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:22:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6453-RB | 2045 | CG6453-RB | 150..889 | 17..756 | 3700 | 100 | Plus |
| CG6453-RA | 2255 | CG6453-RA | 150..889 | 17..756 | 3700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:21:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17483419..17484158 | 756..17 | 3700 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:22:00 has no hits.
BS03330.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:23:41 Download gff for
BS03330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6453-PA | 1..740 | 17..756 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:37:39 Download gff for
BS03330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6453-PA | 1..740 | 17..756 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:47:53 Download gff for
BS03330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6453-RA | 142..889 | 9..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:06:24 Download gff for
BS03330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6453-RA | 142..889 | 9..756 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:06:24 Download gff for
BS03330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17483419..17484166 | 9..756 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:47:53 Download gff for
BS03330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17483419..17484166 | 9..756 | 99 | | Minus |
