Clone Sequence Records
BS03338.3prime Sequence
826 bp (750 high quality bases) assembled on 2005-11-30
> BS03338.3prime
ATGGTCTAGAAAGCTTTCAAGCCTCCAGTTTCAGCTGATCGATGGAGCTT
AGAGTAGTTTCAATAAGCAGATTGTAGTCCAATTCGTTTAGACTGGCCTT
CGCAGTCAGCAGGTCCAGAAAGGAGTCCAGTGGCGAAAGGGCTTCGGCAG
TTAGATCGCTCCGCGCATTATTTCGCGATTGATTCACGCAGGCCGTGGGT
CGCTGCTGGTGCAACACCTCCTGCTGCTGACCCGACAGAATGTTGGCCGC
ATGCTCGCGTCCGCGGATCATAAGGCTGTCCGGATGCTGCCAGCATTTGA
GTAACCTTTGAGCACGCTGCTTGGGCAGAGCAGACAAAAGTGATAGCTTC
CGCTCAATGCCCAGTGGAGAATCTTCAATATCGAAAACAATGGCCTTCAT
CACATCCACTTGCAGTTCGAACACATGATTTTCCACATACTGCAGAAACA
TATCATAGCCCAGCGCACGATAGCCCAAGTAGGTGAAGAACGAGGAGAAA
CCCTCGGGCAGGGGAAACGCAATCGATTCCACAGCCAGGCAATAGCGCTC
GAGGATTAGAAACAGAGAGTGCTGTTGATTGGCAGCCATTTGGTCAATCA
ACTGAAAACCCCTCGAGGTCTCCATGCGCGCATCTAGGCCTGCAGCACGA
CAAACCAGAGAGCAAAGAGCCCGCGAGAGTTCAAGCTGCGCGGAAACGAA
CTGGGAGGCCACCGCATGCACATGAGCTGGAGCCTGGGAGCGCTCGAAAA
AGGTCTCCTTCAGCCAGCGGAAGCCAGTGTTGGGCTTTGACGTGTGCTTC
ACCCAGGGAACGCTCAGCTCGCGCAG
BS03338.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:30:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10739-PA | 2748 | pigeon-RA | 1962..2748 | 803..17 | 3935 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:37:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pigeon-RA | 3187 | CG10739-RA | 2025..2835 | 826..16 | 4010 | 99.8 | Minus |
pigeon-RB | 3334 | CG10739-RB | 2025..2694 | 826..157 | 3305 | 99.7 | Minus |
pigeon-RB | 3334 | CG10739-RB | 2833..2982 | 165..16 | 720 | 98.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:36:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19188875..19189100 | 382..157 | 1130 | 100 | Minus |
2L | 23513712 | 2L | 19188302..19188531 | 826..597 | 1105 | 98.7 | Minus |
2L | 23513712 | 2L | 19188591..19188805 | 596..382 | 1075 | 100 | Minus |
2L | 23513712 | 2L | 19189445..19189586 | 157..16 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 15:36:58 has no hits.
BS03338.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:23:52 Download gff for
BS03338.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10739-PA | 1939..2748 | 17..826 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:37:54 Download gff for
BS03338.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10739-PA | 1939..2748 | 17..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:14:34 Download gff for
BS03338.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pigeon-RA | 2025..2838 | 10..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:57:15 Download gff for
BS03338.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pigeon-RA | 2025..2838 | 10..826 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 18:57:15 Download gff for
BS03338.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19188302..19188531 | 597..826 | 99 | -> | Minus |
2L | 19188591..19188805 | 382..596 | 100 | -> | Minus |
2L | 19188876..19189100 | 157..381 | 100 | -> | Minus |
2L | 19189446..19189589 | 10..156 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:14:34 Download gff for
BS03338.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19188302..19188531 | 597..826 | 99 | -> | Minus |
arm_2L | 19188591..19188805 | 382..596 | 100 | -> | Minus |
arm_2L | 19188876..19189100 | 157..381 | 100 | -> | Minus |
arm_2L | 19189446..19189589 | 10..156 | 97 | | Minus |
BS03338.5prime Sequence
716 bp (656 high quality bases) assembled on 2005-11-30
> BS03338.5prime
GAAGTTATCAGTCGACATGCTGCGGCAGGAGAACTTGGCAGCCAACTTCT
GCGGTCTCCTGGCCAGCCAGGGCTATAAAGAGAAGGCAAACGAGTGGCGC
ATTTTGGGCCAGGAACAGGATGGATCTCTGCTCACGTCCTGGATATTCGA
GTACGCGGACGAGGATCAGCGCAAGGAGACGTGCATTGGCCACTTTCACG
CCACCAAGAAGCAGCTGCGACTCCTTTGGACCCTCGACAATTGCCGTGAG
ATCGTCCAGGCAACGATTAACAGCAGTGTCACATTGCTGTCCTTCGTGGA
GAAAACTGAGGGCAAGCTCTATCAGGCCTTTGTCGTGGAGGTAAGGAGCT
CCGAAGGTGGCACGGCCACGCCCCTCAACTCGGAGCCCTCCAACCGCCAG
ATGATGACGCAGTTCCTGTGGCGCGTCGAGAGTGCCACGCGCACCTGCTG
GCAGGACAAGCTACTGGTGCTCACCCACGAGGAATCCATCAAGCAGTACA
GCTGCGTGGTCAAGCAGAGCTCCACCACATGCTCGACTGGCGGAGGCGAG
GGCAGCGCCTGGAGGCTAGACACCAGCATACTGACCTACGAAACGCTGGC
CAGGAACTTTAGCTGGGCCCAGTGGGATCCCGAGTGCCAGGCTCTTTATT
ACATTCACTTGAAGCCGAAGGCCAAGAGCCTCAGTCTGCTGGACGAGAGG
GAGGAGGCTGGCGAGC
BS03338.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:30:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10739-PA | 2748 | pigeon-RA | 1..700 | 17..716 | 3500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:01:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pigeon-RB | 3334 | CG10739-RB | 87..786 | 17..716 | 3500 | 100 | Plus |
pigeon-RA | 3187 | CG10739-RA | 87..786 | 17..716 | 3500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:01:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19186249..19186655 | 79..485 | 2035 | 100 | Plus |
2L | 23513712 | 2L | 19186719..19186949 | 486..716 | 1155 | 100 | Plus |
2L | 23513712 | 2L | 19186129..19186192 | 17..80 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:01:32 has no hits.
BS03338.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:23:53 Download gff for
BS03338.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10739-PA | 1..700 | 17..716 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:37:55 Download gff for
BS03338.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10739-PA | 1..700 | 17..716 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:33:39 Download gff for
BS03338.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pigeon-RA | 87..786 | 17..716 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:31:19 Download gff for
BS03338.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pigeon-RA | 87..786 | 17..716 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:31:19 Download gff for
BS03338.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19186129..19186192 | 17..80 | 100 | -> | Plus |
2L | 19186251..19186655 | 81..485 | 100 | -> | Plus |
2L | 19186719..19186949 | 486..716 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:33:39 Download gff for
BS03338.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19186129..19186192 | 17..80 | 100 | -> | Plus |
arm_2L | 19186251..19186655 | 81..485 | 100 | -> | Plus |
arm_2L | 19186719..19186949 | 486..716 | 100 | | Plus |
BS03338.complete Sequence
2780 bp assembled on 2010-05-10
GenBank Submission: KX798298
> BS03338.complete
GAAGTTATCAGTCGACATGCTGCGGCAGGAGAACTTGGCAGCCAACTTCT
GCGGTCTCCTGGCCAGCCAGGGCTATAAAGAGAAGGCAAACGAGTGGCGC
ATTTTGGGCCAGGAACAGGATGGATCTCTGCTCACGTCCTGGATATTCGA
GTACGCGGACGAGGATCAGCGCAAGGAGACGTGCATTGGCCACTTTCACG
CCACCAAGAAGCAGCTGCGACTCCTTTGGACCCTCGACAATTGCCGTGAG
ATCGTCCAGGCAACGATTAACAGCAGTGTCACATTGCTGTCCTTCGTGGA
GAAAACTGAGGGCAAGCTCTATCAGGCCTTTGTCGTGGAGGTAAGGAGCT
CCGAAGGTGGCACGGCCACGCCCCTCAACTCGGAGCCCTCCAACCGCCAG
ATGATGACGCAGTTCCTGTGGCGCGTCGAGAGTGCCACGCGCACCTGCTG
GCAGGACAAGCTACTGGTGCTCACCCACGAGGAATCCATCAAGCAGTACA
GCTGCGTGGTCAAGCAGAGCTCCACCACATGCTCGACTGGCGGAGGCGAG
GGCAGCGCCTGGAGGCTAGACACCAGCATACTGACCTACGAAACGCTGGC
CAGGAACTTTAGCTGGGCCCAGTGGGATCCCGAGTGCCAGGCTCTTTATT
ACATTCACTTGAAGCCGAAGGCCAAGAGCCTCAGTCTGCTGGACGAGAGG
GAGGAGGCTGGCGAGCAGACAACTCCTACTTTAAGCCCCACGCTCTCCGC
CTTTCAGTTTAACGAAAAACAGCCAACGGAAACAGTGCTTAATATACCCC
TCAATTTGCCAAAGCTGCCCAATGGCTCCAAAGAGGAATCGCCAAGCTAC
GATGACGATGCGGTTCCCTTGCGCGTGCACGATAGTTCGCTAAATCTCAT
CATACTGGCGGACACCTCGGGCATGTTTTTCGTCTGTCACTACTACCTGT
ACCAGCCGATGCAGTCGGAGCAAAGGGATGTGCACTTTGCCTACTCGGTG
ACTTTGCTTCACCACGGCTATGTGGTGCACTGCGTCATGCCCGGTGTGCC
GTGGCAAAAGGCCCGTCTGCTGAGGCCAACATTTGCGCTACACGGCCAGC
ATCACTTGCTGGTGTCGTCCGCCTTTTTTGTCCACCTCTTGGACGTGGGA
CTGCAGCACGAACCGAACTGCCATATCGTGTGTGCAGCCCACAATCGAAG
TCCCGATATCACACAGCTGGTGCCTTTGCGAAAGTGGGGAGCTCTGGCTT
ATGATGCGGCCACCTTGGATCTGGTCTCGTTGTCCGTGCCCAAATCCCAT
TTGATAGAGGCTTTCCGCAATGACAGTTCGCTGGACAATAGAATCAGCAT
TATCCACTACTTCCTTTTGCACTCGAACGATATGGATGTGTTGGCCGAGC
TGCTGAACAATATCTTGGAGCGACCACTCTCCCTGGATACGGTGGCTTTG
CTGAAGGAGGCTCTTGTGGCTGGCAGCTATGCGGCTGCTGTTCGCGGACT
ACCAGAGGATGCCAAGCCACTGATGCGACTACTGCCATTGACTACTGCCT
TAGCCTCGCGACCAATCCACGCAAAGGTGGCCGATATAAGCGTGGGTCTC
TCTCATGAAACCCTGCACAATACCAGCATGATGCTGCTCTCGCCACAGCA
GCGCCTTTCACCTTATCGCACGGACATCTGGACTCGCTTATGGGACCTTC
TCAACGAGTCAGCCAAGCAGGAGCAGCCTAGATTCAGTGCTGAGCAGGTG
ACGGAGAAGTTGATCTTTAGTTTGGCCTGCTACCAGCCGGAGGCTCTGTC
CAGATGCACCACGCCACTTTCGCCAGACACGGGCACCGGTGGATTTGGTG
ACTATAGTAGCGGAAGTGCTTTTCCATTCAGCAACGAAGTGCTGCCCTTT
ATCGAACTGGAGGGATGCACAGCCAGCAAGCAGGAGCACGTCATTTCTGT
GTATCTGCGCGAGCTGAGCGTTCACCTGGTGAAGCACACGTCAAAGCCCA
ACACTGGCTTCCGCTGGCTGAAGGAGACCTTTTTCGAGCGCTCCCAGGCT
CCAGCTCATGTGCATGCGGTGGCCTCCCAGTTCGTTTCCGCGCAGCTTGA
ACTCTCGCGGGCTCTTTGCTCTCTGGTTTGTCGTGCTGCAGGCCTAGATG
CGCGCATGGAGACCTCGAGGGGTTTTCAGTTGATTGACCAAATGGCTGCC
AATCAACAGCACTCTCTGTTTCTAATCCTCGAGCGCTATTGCCTGGCTGT
GGAATCGATTGCGTTTCCCCTGCCCGAGGGTTTCTCCTCGTTCTTCACCT
ACTTGGGCTATCGTGCGCTGGGCTATGATATGTTTCTGCAGTATGTGGAA
AATCATGTGTTCGAACTGCAAGTGGATGTGATGAAGGCCATTGTTTTCGA
TATTGAAGATTCTCCACTGGGCATTGAGCGGAAGCTATCACTTTTGTCTG
CTCTGCCCAAGCAGCGTGCTCAAAGGTTACTCAAATGCTGGCAGCATCCG
GACAGCCTTATGATCCGCGGACGCGAGCATGCGGCCAACATTCTGTCGGG
TCAGCAGCAGGAGGTGTTGCACCAGCAGCGACCCACGGCCTGCGTGAATC
AATCGCGAAATAATGCGCGGAGCGATCTAACTGCCGAAGCCCTTTCGCCA
CTGGACTCCTTTCTGGACCTGCTGACTGCGAAGGCCAGTCTAAACGAATT
GGACTACAATCTGCTTATTGAAACTACTCTAAGCTCCATCGATCAGCTGA
AACTGGAGGCTTGAAAGCTTTCTAGACCAT
BS03338.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:56:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pigeon-RA | 2748 | CG10739-PA | 1..2748 | 17..2764 | 13740 | 100 | Plus |
pigeon-RB | 2733 | CG10739-PB | 1..2608 | 17..2624 | 13040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:56:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pigeon-RA | 3187 | CG10739-RA | 87..2835 | 17..2765 | 13745 | 100 | Plus |
pigeon-RB | 3334 | CG10739-RB | 87..2694 | 17..2624 | 13040 | 100 | Plus |
pigeon-RB | 3334 | CG10739-RB | 2833..2982 | 2616..2765 | 720 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:56:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19187078..19188242 | 787..1951 | 5825 | 100 | Plus |
2L | 23513712 | 2L | 19186249..19186655 | 79..485 | 2035 | 100 | Plus |
2L | 23513712 | 2L | 19186719..19187020 | 486..787 | 1510 | 100 | Plus |
2L | 23513712 | 2L | 19188298..19188531 | 1951..2184 | 1170 | 100 | Plus |
2L | 23513712 | 2L | 19188875..19189100 | 2399..2624 | 1130 | 100 | Plus |
2L | 23513712 | 2L | 19188591..19188805 | 2185..2399 | 1075 | 100 | Plus |
2L | 23513712 | 2L | 19189445..19189586 | 2624..2765 | 710 | 100 | Plus |
2L | 23513712 | 2L | 19186129..19186192 | 17..80 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:56:08 has no hits.
BS03338.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:38 Download gff for
BS03338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pigeon-RA | 89..2835 | 17..2763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:17 Download gff for
BS03338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pigeon-RA | 87..2833 | 17..2763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:46 Download gff for
BS03338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pigeon-RA | 87..2833 | 17..2763 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:46 Download gff for
BS03338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19186129..19186192 | 17..80 | 100 | -> | Plus |
2L | 19186251..19186655 | 81..485 | 100 | -> | Plus |
2L | 19186719..19187020 | 486..787 | 100 | -> | Plus |
2L | 19187079..19188242 | 788..1951 | 100 | -> | Plus |
2L | 19188299..19188531 | 1952..2184 | 100 | -> | Plus |
2L | 19188591..19188805 | 2185..2399 | 100 | -> | Plus |
2L | 19188876..19189100 | 2400..2624 | 100 | -> | Plus |
2L | 19189446..19189584 | 2625..2763 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:17 Download gff for
BS03338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19186129..19186192 | 17..80 | 100 | -> | Plus |
arm_2L | 19186251..19186655 | 81..485 | 100 | -> | Plus |
arm_2L | 19186719..19187020 | 486..787 | 100 | -> | Plus |
arm_2L | 19187079..19188242 | 788..1951 | 100 | -> | Plus |
arm_2L | 19188299..19188531 | 1952..2184 | 100 | -> | Plus |
arm_2L | 19188591..19188805 | 2185..2399 | 100 | -> | Plus |
arm_2L | 19188876..19189100 | 2400..2624 | 100 | -> | Plus |
arm_2L | 19189446..19189584 | 2625..2763 | 100 | | Plus |
BS03338.pep Sequence
Translation from 16 to 2763
> BS03338.pep
MLRQENLAANFCGLLASQGYKEKANEWRILGQEQDGSLLTSWIFEYADED
QRKETCIGHFHATKKQLRLLWTLDNCREIVQATINSSVTLLSFVEKTEGK
LYQAFVVEVRSSEGGTATPLNSEPSNRQMMTQFLWRVESATRTCWQDKLL
VLTHEESIKQYSCVVKQSSTTCSTGGGEGSAWRLDTSILTYETLARNFSW
AQWDPECQALYYIHLKPKAKSLSLLDEREEAGEQTTPTLSPTLSAFQFNE
KQPTETVLNIPLNLPKLPNGSKEESPSYDDDAVPLRVHDSSLNLIILADT
SGMFFVCHYYLYQPMQSEQRDVHFAYSVTLLHHGYVVHCVMPGVPWQKAR
LLRPTFALHGQHHLLVSSAFFVHLLDVGLQHEPNCHIVCAAHNRSPDITQ
LVPLRKWGALAYDAATLDLVSLSVPKSHLIEAFRNDSSLDNRISIIHYFL
LHSNDMDVLAELLNNILERPLSLDTVALLKEALVAGSYAAAVRGLPEDAK
PLMRLLPLTTALASRPIHAKVADISVGLSHETLHNTSMMLLSPQQRLSPY
RTDIWTRLWDLLNESAKQEQPRFSAEQVTEKLIFSLACYQPEALSRCTTP
LSPDTGTGGFGDYSSGSAFPFSNEVLPFIELEGCTASKQEHVISVYLREL
SVHLVKHTSKPNTGFRWLKETFFERSQAPAHVHAVASQFVSAQLELSRAL
CSLVCRAAGLDARMETSRGFQLIDQMAANQQHSLFLILERYCLAVESIAF
PLPEGFSSFFTYLGYRALGYDMFLQYVENHVFELQVDVMKAIVFDIEDSP
LGIERKLSLLSALPKQRAQRLLKCWQHPDSLMIRGREHAANILSGQQQEV
LHQQRPTACVNQSRNNARSDLTAEALSPLDSFLDLLTAKASLNELDYNLL
IETTLSSIDQLKLEA*
BS03338.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:18:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pigeon-PA | 915 | CG10739-PA | 1..915 | 1..915 | 4746 | 100 | Plus |
pigeon-PB | 910 | CG10739-PB | 1..871 | 1..871 | 4531 | 99.9 | Plus |