Clone BS03338 Report

Search the DGRC for BS03338

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:33
Well:38
Vector:pDNR-Dual
Associated Gene/Transcriptpigeon-RA
Protein status:BS03338.pep: full length peptide match
Sequenced Size:2780

Clone Sequence Records

BS03338.3prime Sequence

826 bp (750 high quality bases) assembled on 2005-11-30

> BS03338.3prime
ATGGTCTAGAAAGCTTTCAAGCCTCCAGTTTCAGCTGATCGATGGAGCTT
AGAGTAGTTTCAATAAGCAGATTGTAGTCCAATTCGTTTAGACTGGCCTT
CGCAGTCAGCAGGTCCAGAAAGGAGTCCAGTGGCGAAAGGGCTTCGGCAG
TTAGATCGCTCCGCGCATTATTTCGCGATTGATTCACGCAGGCCGTGGGT
CGCTGCTGGTGCAACACCTCCTGCTGCTGACCCGACAGAATGTTGGCCGC
ATGCTCGCGTCCGCGGATCATAAGGCTGTCCGGATGCTGCCAGCATTTGA
GTAACCTTTGAGCACGCTGCTTGGGCAGAGCAGACAAAAGTGATAGCTTC
CGCTCAATGCCCAGTGGAGAATCTTCAATATCGAAAACAATGGCCTTCAT
CACATCCACTTGCAGTTCGAACACATGATTTTCCACATACTGCAGAAACA
TATCATAGCCCAGCGCACGATAGCCCAAGTAGGTGAAGAACGAGGAGAAA
CCCTCGGGCAGGGGAAACGCAATCGATTCCACAGCCAGGCAATAGCGCTC
GAGGATTAGAAACAGAGAGTGCTGTTGATTGGCAGCCATTTGGTCAATCA
ACTGAAAACCCCTCGAGGTCTCCATGCGCGCATCTAGGCCTGCAGCACGA
CAAACCAGAGAGCAAAGAGCCCGCGAGAGTTCAAGCTGCGCGGAAACGAA
CTGGGAGGCCACCGCATGCACATGAGCTGGAGCCTGGGAGCGCTCGAAAA
AGGTCTCCTTCAGCCAGCGGAAGCCAGTGTTGGGCTTTGACGTGTGCTTC
ACCCAGGGAACGCTCAGCTCGCGCAG

BS03338.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:30:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10739-PA 2748 pigeon-RA 1962..2748 803..17 3935 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
pigeon-RA 3187 CG10739-RA 2025..2835 826..16 4010 99.8 Minus
pigeon-RB 3334 CG10739-RB 2025..2694 826..157 3305 99.7 Minus
pigeon-RB 3334 CG10739-RB 2833..2982 165..16 720 98.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19188875..19189100 382..157 1130 100 Minus
2L 23513712 2L 19188302..19188531 826..597 1105 98.7 Minus
2L 23513712 2L 19188591..19188805 596..382 1075 100 Minus
2L 23513712 2L 19189445..19189586 157..16 710 100 Minus
Blast to na_te.dros performed on 2015-02-06 15:36:58 has no hits.

BS03338.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:23:52 Download gff for BS03338.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10739-PA 1939..2748 17..826 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:37:54 Download gff for BS03338.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10739-PA 1939..2748 17..826 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:14:34 Download gff for BS03338.3prime
Subject Subject Range Query Range Percent Splice Strand
pigeon-RA 2025..2838 10..826 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:57:15 Download gff for BS03338.3prime
Subject Subject Range Query Range Percent Splice Strand
pigeon-RA 2025..2838 10..826 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 18:57:15 Download gff for BS03338.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19188302..19188531 597..826 99 -> Minus
2L 19188591..19188805 382..596 100 -> Minus
2L 19188876..19189100 157..381 100 -> Minus
2L 19189446..19189589 10..156 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:14:34 Download gff for BS03338.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19188302..19188531 597..826 99 -> Minus
arm_2L 19188591..19188805 382..596 100 -> Minus
arm_2L 19188876..19189100 157..381 100 -> Minus
arm_2L 19189446..19189589 10..156 97   Minus

BS03338.5prime Sequence

716 bp (656 high quality bases) assembled on 2005-11-30

> BS03338.5prime
GAAGTTATCAGTCGACATGCTGCGGCAGGAGAACTTGGCAGCCAACTTCT
GCGGTCTCCTGGCCAGCCAGGGCTATAAAGAGAAGGCAAACGAGTGGCGC
ATTTTGGGCCAGGAACAGGATGGATCTCTGCTCACGTCCTGGATATTCGA
GTACGCGGACGAGGATCAGCGCAAGGAGACGTGCATTGGCCACTTTCACG
CCACCAAGAAGCAGCTGCGACTCCTTTGGACCCTCGACAATTGCCGTGAG
ATCGTCCAGGCAACGATTAACAGCAGTGTCACATTGCTGTCCTTCGTGGA
GAAAACTGAGGGCAAGCTCTATCAGGCCTTTGTCGTGGAGGTAAGGAGCT
CCGAAGGTGGCACGGCCACGCCCCTCAACTCGGAGCCCTCCAACCGCCAG
ATGATGACGCAGTTCCTGTGGCGCGTCGAGAGTGCCACGCGCACCTGCTG
GCAGGACAAGCTACTGGTGCTCACCCACGAGGAATCCATCAAGCAGTACA
GCTGCGTGGTCAAGCAGAGCTCCACCACATGCTCGACTGGCGGAGGCGAG
GGCAGCGCCTGGAGGCTAGACACCAGCATACTGACCTACGAAACGCTGGC
CAGGAACTTTAGCTGGGCCCAGTGGGATCCCGAGTGCCAGGCTCTTTATT
ACATTCACTTGAAGCCGAAGGCCAAGAGCCTCAGTCTGCTGGACGAGAGG
GAGGAGGCTGGCGAGC

BS03338.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG10739-PA 2748 pigeon-RA 1..700 17..716 3500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
pigeon-RB 3334 CG10739-RB 87..786 17..716 3500 100 Plus
pigeon-RA 3187 CG10739-RA 87..786 17..716 3500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19186249..19186655 79..485 2035 100 Plus
2L 23513712 2L 19186719..19186949 486..716 1155 100 Plus
2L 23513712 2L 19186129..19186192 17..80 320 100 Plus
Blast to na_te.dros performed on 2015-02-12 20:01:32 has no hits.

BS03338.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:23:53 Download gff for BS03338.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10739-PA 1..700 17..716 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:37:55 Download gff for BS03338.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10739-PA 1..700 17..716 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:33:39 Download gff for BS03338.5prime
Subject Subject Range Query Range Percent Splice Strand
pigeon-RA 87..786 17..716 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:31:19 Download gff for BS03338.5prime
Subject Subject Range Query Range Percent Splice Strand
pigeon-RA 87..786 17..716 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:31:19 Download gff for BS03338.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19186129..19186192 17..80 100 -> Plus
2L 19186251..19186655 81..485 100 -> Plus
2L 19186719..19186949 486..716 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:33:39 Download gff for BS03338.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19186129..19186192 17..80 100 -> Plus
arm_2L 19186251..19186655 81..485 100 -> Plus
arm_2L 19186719..19186949 486..716 100   Plus

BS03338.complete Sequence

2780 bp assembled on 2010-05-10

GenBank Submission: KX798298

> BS03338.complete
GAAGTTATCAGTCGACATGCTGCGGCAGGAGAACTTGGCAGCCAACTTCT
GCGGTCTCCTGGCCAGCCAGGGCTATAAAGAGAAGGCAAACGAGTGGCGC
ATTTTGGGCCAGGAACAGGATGGATCTCTGCTCACGTCCTGGATATTCGA
GTACGCGGACGAGGATCAGCGCAAGGAGACGTGCATTGGCCACTTTCACG
CCACCAAGAAGCAGCTGCGACTCCTTTGGACCCTCGACAATTGCCGTGAG
ATCGTCCAGGCAACGATTAACAGCAGTGTCACATTGCTGTCCTTCGTGGA
GAAAACTGAGGGCAAGCTCTATCAGGCCTTTGTCGTGGAGGTAAGGAGCT
CCGAAGGTGGCACGGCCACGCCCCTCAACTCGGAGCCCTCCAACCGCCAG
ATGATGACGCAGTTCCTGTGGCGCGTCGAGAGTGCCACGCGCACCTGCTG
GCAGGACAAGCTACTGGTGCTCACCCACGAGGAATCCATCAAGCAGTACA
GCTGCGTGGTCAAGCAGAGCTCCACCACATGCTCGACTGGCGGAGGCGAG
GGCAGCGCCTGGAGGCTAGACACCAGCATACTGACCTACGAAACGCTGGC
CAGGAACTTTAGCTGGGCCCAGTGGGATCCCGAGTGCCAGGCTCTTTATT
ACATTCACTTGAAGCCGAAGGCCAAGAGCCTCAGTCTGCTGGACGAGAGG
GAGGAGGCTGGCGAGCAGACAACTCCTACTTTAAGCCCCACGCTCTCCGC
CTTTCAGTTTAACGAAAAACAGCCAACGGAAACAGTGCTTAATATACCCC
TCAATTTGCCAAAGCTGCCCAATGGCTCCAAAGAGGAATCGCCAAGCTAC
GATGACGATGCGGTTCCCTTGCGCGTGCACGATAGTTCGCTAAATCTCAT
CATACTGGCGGACACCTCGGGCATGTTTTTCGTCTGTCACTACTACCTGT
ACCAGCCGATGCAGTCGGAGCAAAGGGATGTGCACTTTGCCTACTCGGTG
ACTTTGCTTCACCACGGCTATGTGGTGCACTGCGTCATGCCCGGTGTGCC
GTGGCAAAAGGCCCGTCTGCTGAGGCCAACATTTGCGCTACACGGCCAGC
ATCACTTGCTGGTGTCGTCCGCCTTTTTTGTCCACCTCTTGGACGTGGGA
CTGCAGCACGAACCGAACTGCCATATCGTGTGTGCAGCCCACAATCGAAG
TCCCGATATCACACAGCTGGTGCCTTTGCGAAAGTGGGGAGCTCTGGCTT
ATGATGCGGCCACCTTGGATCTGGTCTCGTTGTCCGTGCCCAAATCCCAT
TTGATAGAGGCTTTCCGCAATGACAGTTCGCTGGACAATAGAATCAGCAT
TATCCACTACTTCCTTTTGCACTCGAACGATATGGATGTGTTGGCCGAGC
TGCTGAACAATATCTTGGAGCGACCACTCTCCCTGGATACGGTGGCTTTG
CTGAAGGAGGCTCTTGTGGCTGGCAGCTATGCGGCTGCTGTTCGCGGACT
ACCAGAGGATGCCAAGCCACTGATGCGACTACTGCCATTGACTACTGCCT
TAGCCTCGCGACCAATCCACGCAAAGGTGGCCGATATAAGCGTGGGTCTC
TCTCATGAAACCCTGCACAATACCAGCATGATGCTGCTCTCGCCACAGCA
GCGCCTTTCACCTTATCGCACGGACATCTGGACTCGCTTATGGGACCTTC
TCAACGAGTCAGCCAAGCAGGAGCAGCCTAGATTCAGTGCTGAGCAGGTG
ACGGAGAAGTTGATCTTTAGTTTGGCCTGCTACCAGCCGGAGGCTCTGTC
CAGATGCACCACGCCACTTTCGCCAGACACGGGCACCGGTGGATTTGGTG
ACTATAGTAGCGGAAGTGCTTTTCCATTCAGCAACGAAGTGCTGCCCTTT
ATCGAACTGGAGGGATGCACAGCCAGCAAGCAGGAGCACGTCATTTCTGT
GTATCTGCGCGAGCTGAGCGTTCACCTGGTGAAGCACACGTCAAAGCCCA
ACACTGGCTTCCGCTGGCTGAAGGAGACCTTTTTCGAGCGCTCCCAGGCT
CCAGCTCATGTGCATGCGGTGGCCTCCCAGTTCGTTTCCGCGCAGCTTGA
ACTCTCGCGGGCTCTTTGCTCTCTGGTTTGTCGTGCTGCAGGCCTAGATG
CGCGCATGGAGACCTCGAGGGGTTTTCAGTTGATTGACCAAATGGCTGCC
AATCAACAGCACTCTCTGTTTCTAATCCTCGAGCGCTATTGCCTGGCTGT
GGAATCGATTGCGTTTCCCCTGCCCGAGGGTTTCTCCTCGTTCTTCACCT
ACTTGGGCTATCGTGCGCTGGGCTATGATATGTTTCTGCAGTATGTGGAA
AATCATGTGTTCGAACTGCAAGTGGATGTGATGAAGGCCATTGTTTTCGA
TATTGAAGATTCTCCACTGGGCATTGAGCGGAAGCTATCACTTTTGTCTG
CTCTGCCCAAGCAGCGTGCTCAAAGGTTACTCAAATGCTGGCAGCATCCG
GACAGCCTTATGATCCGCGGACGCGAGCATGCGGCCAACATTCTGTCGGG
TCAGCAGCAGGAGGTGTTGCACCAGCAGCGACCCACGGCCTGCGTGAATC
AATCGCGAAATAATGCGCGGAGCGATCTAACTGCCGAAGCCCTTTCGCCA
CTGGACTCCTTTCTGGACCTGCTGACTGCGAAGGCCAGTCTAAACGAATT
GGACTACAATCTGCTTATTGAAACTACTCTAAGCTCCATCGATCAGCTGA
AACTGGAGGCTTGAAAGCTTTCTAGACCAT

BS03338.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:56:08
Subject Length Description Subject Range Query Range Score Percent Strand
pigeon-RA 2748 CG10739-PA 1..2748 17..2764 13740 100 Plus
pigeon-RB 2733 CG10739-PB 1..2608 17..2624 13040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
pigeon-RA 3187 CG10739-RA 87..2835 17..2765 13745 100 Plus
pigeon-RB 3334 CG10739-RB 87..2694 17..2624 13040 100 Plus
pigeon-RB 3334 CG10739-RB 2833..2982 2616..2765 720 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:56:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19187078..19188242 787..1951 5825 100 Plus
2L 23513712 2L 19186249..19186655 79..485 2035 100 Plus
2L 23513712 2L 19186719..19187020 486..787 1510 100 Plus
2L 23513712 2L 19188298..19188531 1951..2184 1170 100 Plus
2L 23513712 2L 19188875..19189100 2399..2624 1130 100 Plus
2L 23513712 2L 19188591..19188805 2185..2399 1075 100 Plus
2L 23513712 2L 19189445..19189586 2624..2765 710 100 Plus
2L 23513712 2L 19186129..19186192 17..80 320 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:56:08 has no hits.

BS03338.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:38 Download gff for BS03338.complete
Subject Subject Range Query Range Percent Splice Strand
pigeon-RA 89..2835 17..2763 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:17 Download gff for BS03338.complete
Subject Subject Range Query Range Percent Splice Strand
pigeon-RA 87..2833 17..2763 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:46 Download gff for BS03338.complete
Subject Subject Range Query Range Percent Splice Strand
pigeon-RA 87..2833 17..2763 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:46 Download gff for BS03338.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19186129..19186192 17..80 100 -> Plus
2L 19186251..19186655 81..485 100 -> Plus
2L 19186719..19187020 486..787 100 -> Plus
2L 19187079..19188242 788..1951 100 -> Plus
2L 19188299..19188531 1952..2184 100 -> Plus
2L 19188591..19188805 2185..2399 100 -> Plus
2L 19188876..19189100 2400..2624 100 -> Plus
2L 19189446..19189584 2625..2763 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:17 Download gff for BS03338.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19186129..19186192 17..80 100 -> Plus
arm_2L 19186251..19186655 81..485 100 -> Plus
arm_2L 19186719..19187020 486..787 100 -> Plus
arm_2L 19187079..19188242 788..1951 100 -> Plus
arm_2L 19188299..19188531 1952..2184 100 -> Plus
arm_2L 19188591..19188805 2185..2399 100 -> Plus
arm_2L 19188876..19189100 2400..2624 100 -> Plus
arm_2L 19189446..19189584 2625..2763 100   Plus

BS03338.pep Sequence

Translation from 16 to 2763

> BS03338.pep
MLRQENLAANFCGLLASQGYKEKANEWRILGQEQDGSLLTSWIFEYADED
QRKETCIGHFHATKKQLRLLWTLDNCREIVQATINSSVTLLSFVEKTEGK
LYQAFVVEVRSSEGGTATPLNSEPSNRQMMTQFLWRVESATRTCWQDKLL
VLTHEESIKQYSCVVKQSSTTCSTGGGEGSAWRLDTSILTYETLARNFSW
AQWDPECQALYYIHLKPKAKSLSLLDEREEAGEQTTPTLSPTLSAFQFNE
KQPTETVLNIPLNLPKLPNGSKEESPSYDDDAVPLRVHDSSLNLIILADT
SGMFFVCHYYLYQPMQSEQRDVHFAYSVTLLHHGYVVHCVMPGVPWQKAR
LLRPTFALHGQHHLLVSSAFFVHLLDVGLQHEPNCHIVCAAHNRSPDITQ
LVPLRKWGALAYDAATLDLVSLSVPKSHLIEAFRNDSSLDNRISIIHYFL
LHSNDMDVLAELLNNILERPLSLDTVALLKEALVAGSYAAAVRGLPEDAK
PLMRLLPLTTALASRPIHAKVADISVGLSHETLHNTSMMLLSPQQRLSPY
RTDIWTRLWDLLNESAKQEQPRFSAEQVTEKLIFSLACYQPEALSRCTTP
LSPDTGTGGFGDYSSGSAFPFSNEVLPFIELEGCTASKQEHVISVYLREL
SVHLVKHTSKPNTGFRWLKETFFERSQAPAHVHAVASQFVSAQLELSRAL
CSLVCRAAGLDARMETSRGFQLIDQMAANQQHSLFLILERYCLAVESIAF
PLPEGFSSFFTYLGYRALGYDMFLQYVENHVFELQVDVMKAIVFDIEDSP
LGIERKLSLLSALPKQRAQRLLKCWQHPDSLMIRGREHAANILSGQQQEV
LHQQRPTACVNQSRNNARSDLTAEALSPLDSFLDLLTAKASLNELDYNLL
IETTLSSIDQLKLEA*

BS03338.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:18:00
Subject Length Description Subject Range Query Range Score Percent Strand
pigeon-PA 915 CG10739-PA 1..915 1..915 4746 100 Plus
pigeon-PB 910 CG10739-PB 1..871 1..871 4531 99.9 Plus