Clone Sequence Records
BS03343.3prime Sequence
795 bp (736 high quality bases) assembled on 2005-11-30
> BS03343.3prime
ATGGTCTAGAAAGCTTTTAGCGACGTCCGTAGTTGCCACCACCACTCTGT
CCATTTCCGGCACCGCGCAGCGGTCCGTTAGACTGGTTGTTGCCGCCACC
GGTGCGGTTATCCTGGCGCTGTCCGAATCCACCGCCGCCTCCCAGGCGAG
GAGCACCGTTTCCTCCGCCGCCGCCCTGGCGCAGATTGTTGCCACCGGCA
TTGTTGCGCATCATGCCACCGCCGCTGCCATTGTTGTTGCCCATCGGACG
CGACTGCGGACCATTGTTGCCGCCCAAACGGCCCATGTTGTTGTTCAGGT
TGTTGCCACCGATCTGCTGGCGCGGCACCATGTCGTTGCGGACACGCGGC
TTCTTCTCCTCCACATTCAACTTCTGGCCATCGGGTGAGTTCTCCGGGAA
GTATAGGGGGCAGTTCGCCAGGCACTTTTGCACCGCCTCAGGATCGTCGT
AGGTAATGAATCCGTAGTTCAGCGGACTGCGCATGCCTGGTGGCACCTTG
TTGCCAGCCTTGGACAAAATGCGCAGCTCCAGGACATTTCCGAAGCGTGA
GAAGATCTCGCGCAGATCATCCTCGCTGGCGTGGTGCGGTATATTGCCCA
AAAACAGCTGCTGATTATCACCGAACTGCTGCGTGTTGCTCGAGCGACGC
TGCTCAAAGTCACCCTTGTTGTTGCGGATCGAGTTGTTTCGCTGCGGCAG
CGGGCCACCGTTGTCCAGTCGCGAGTTGCCGTTGCTGTTGTTGTACGACG
AAGCGGTGGTGGAGTAGCTAACCTGACTGCCATTACCGCCACCCG
BS03343.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:30:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9412-PA | 2073 | rin-RA | 1295..2073 | 795..17 | 3895 | 100 | Minus |
CG9412-PB | 2073 | rin-RB | 1295..2073 | 795..17 | 3895 | 100 | Minus |
CG9412-PC | 2073 | rin-RC | 1295..2073 | 795..17 | 3895 | 100 | Minus |
CG9412-PE | 2073 | rin-RE | 1295..2073 | 795..17 | 3895 | 100 | Minus |
CG9412-PD | 2073 | rin-RD | 1295..2073 | 795..17 | 3895 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:41:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rin-RG | 5382 | CG9412-RG | 1643..2421 | 795..17 | 3895 | 100 | Minus |
rin-RF | 3167 | CG9412-RF | 1542..2320 | 795..17 | 3895 | 100 | Minus |
rin-RE | 3501 | CG9412-RE | 1876..2654 | 795..17 | 3895 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:41:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13651174..13651566 | 409..17 | 1965 | 100 | Minus |
3R | 32079331 | 3R | 13650808..13651059 | 661..410 | 1260 | 100 | Minus |
3R | 32079331 | 3R | 13650363..13650497 | 795..661 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:41:27 has no hits.
BS03343.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:24:02 Download gff for
BS03343.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9412-PA | 1295..2073 | 17..795 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:38:05 Download gff for
BS03343.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9412-PD | 1295..2073 | 17..795 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:44:12 Download gff for
BS03343.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rin-RB | 1643..2428 | 10..795 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:05:47 Download gff for
BS03343.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rin-RE | 1876..2661 | 10..795 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:05:47 Download gff for
BS03343.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13650363..13650497 | 661..795 | 100 | -> | Minus |
3R | 13650809..13651059 | 410..660 | 100 | -> | Minus |
3R | 13651174..13651573 | 10..409 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:44:12 Download gff for
BS03343.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9476085..9476219 | 661..795 | 100 | -> | Minus |
arm_3R | 9476531..9476781 | 410..660 | 100 | -> | Minus |
arm_3R | 9476896..9477295 | 10..409 | 99 | | Minus |
BS03343.5prime Sequence
770 bp (658 high quality bases) assembled on 2005-11-30
> BS03343.5prime
GAAGTTATCAGTCGACATGGTCATGGATGCGACCCAATCGCAGCAGCCTT
CGCCGCAATCTGTGGGACGCGAGTTTGTCCGCCAGTACTACACGCTGTTG
AACAAGGCGCCCAACCACTTGCATCGCTTCTATAACCACAACTCGTCGTA
CATCCATGGAGAGTCCAAGCTGGTGGTCGGTCAGCGGGAGATCCACAACC
GAATCCAGCAGCTGAACTTCAACGATTGCCACGCGAAGATCAGCCAGGTT
GATGCCCAGGCCACTTTGGGCAACGGTGTGGTGGTTCAGGTCACCGGGGA
GCTATCCAATGATGGCCAGCCGATGCGGCGTTTTACCCAGACGTTCGTTC
TGGCCGCTCAGTCGCCGAAGAAGTACTACGTGCACAACGACATCTTCCGC
TATCAGGATCTCTACATCGAGGACGAGCAGGATGGCGAGTCGCGATCGGA
GAACGATGAGGAGCACGATGTGCAGGTCGTCGGTGGCACTGTGGATCAAG
CTGTGCAGGTGGCCGGCGATGTAGTTGCCCAGCAGCCGCAGCAACAGCAG
GCTCCTCCGCAGCCACAGGCTCAGGTCGTGGTGCCCCAGCAGGTAGCTCC
TGTAGCGGCCGGTGGTGCTGCCCCACAGCAGATCTTCTACCCATTGCCAG
CGGGTGCTGCCGCCGGACGTCCTGTGGCTGTTTTGCCACCAGCTCCGCAA
GCCGCTGCTGTTCCACTGCCCGCGCAGTTCACCGTTCCGCCGCCACAGCC
CATCCAGAACGGGGGGGTGT
BS03343.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:30:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9412-PA | 2073 | rin-RA | 1..746 | 17..762 | 3730 | 100 | Plus |
CG9412-PB | 2073 | rin-RB | 1..746 | 17..762 | 3730 | 100 | Plus |
CG9412-PC | 2073 | rin-RC | 1..746 | 17..762 | 3730 | 100 | Plus |
CG9412-PE | 2073 | rin-RE | 1..746 | 17..762 | 3730 | 100 | Plus |
CG9412-PD | 2073 | rin-RD | 1..746 | 17..762 | 3730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:25:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rin-RG | 5382 | CG9412-RG | 349..1102 | 17..770 | 3740 | 99.7 | Plus |
rin-RF | 3167 | CG9412-RF | 248..1001 | 17..770 | 3740 | 99.7 | Plus |
rin-RE | 3501 | CG9412-RE | 582..1335 | 17..770 | 3740 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:25:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13649069..13649822 | 17..770 | 3740 | 99.7 | Plus |
Blast to na_te.dros performed 2015-02-13 02:25:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2352..2390 | 530..568 | 123 | 79.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6884 | 530..663 | 117 | 59.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1088..1125 | 530..567 | 109 | 76.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6817 | 530..574 | 108 | 71.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1100..1144 | 530..574 | 108 | 71.1 | Plus |
BS03343.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:24:03 Download gff for
BS03343.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9412-PA | 1..754 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:38:06 Download gff for
BS03343.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9412-PD | 1..754 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:48:15 Download gff for
BS03343.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rin-RB | 344..1102 | 9..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:34:45 Download gff for
BS03343.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rin-RE | 577..1335 | 9..770 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:34:45 Download gff for
BS03343.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13649064..13649822 | 9..770 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:48:15 Download gff for
BS03343.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9474786..9475544 | 9..770 | 99 | | Plus |
BS03343.complete Sequence
2105 bp assembled on 2008-01-02
GenBank Submission: FJ634715
> BS03343.complete
GAAGTTATCAGTCGACATGGTCATGGATGCGACCCAATCGCAGCAGCCTT
CGCCGCAATCTGTGGGACGCGAGTTTGTCCGCCAGTACTACACGCTGTTG
AACAAGGCGCCCAACCACTTGCATCGCTTCTATAACCACAACTCGTCGTA
CATCCATGGAGAGTCCAAGCTGGTGGTCGGTCAGCGGGAGATCCACAACC
GAATCCAGCAGCTGAACTTCAACGATTGCCACGCGAAGATCAGCCAGGTT
GATGCCCAGGCCACTTTGGGCAACGGTGTGGTGGTTCAGGTCACCGGGGA
GCTATCCAATGATGGCCAGCCGATGCGGCGTTTTACCCAGACGTTCGTTC
TGGCCGCTCAGTCGCCGAAGAAGTACTACGTGCACAACGACATCTTCCGC
TATCAGGATCTCTACATCGAGGACGAGCAGGATGGCGAGTCGCGATCGGA
GAACGATGAGGAGCACGATGTGCAGGTCGTCGGTGGCACTGTGGATCAAG
CTGTGCAGGTGGCCGGCGATGTAGTTGCCCAGCAGCCGCAGCAACAGCAG
GCTCCTCCGCAGCCACAGGCTCAGGTCGTGGTGCCCCAGCAGGTAGCTCC
TGTAGCGGCCGGTGGTGCTGCCCCACAGCAGATCTTCTACCCATTGCCAG
CGGGTGCTGCCGCCGGACGTCCTGTGGCTGTTTTGCCACCAGCTCCGCAA
GCCGCTGCTGTTCCACTGCCCGCGCAGTTCACCGTTCCGCCGCCACAGCC
CATCCAGAACGGTGTGGTGTCGCACGAGGAGCTGCAGCAGCAGCAGGTGC
TGGTCCCACCCAGCGTGTCTCCCCTGGTACAGCAGCAGCAGCCGACCGGC
ACGCCTGTGTTGCCCATTGTTCCAGTGCCAAGCGCGGGCTTCCAACAGTC
GCCACTGGTGGCACCACAGCTCATCCAGCAGCAGCAGCAGCAGCAACCGG
CACAGCTGCCCCCGCAGCAGCAGCAGCAGCAGCAACCTATCCAGCAGCAG
CAGCCTTTGCAACAGCAGCAACAACCGCTGGCTGAGCCCGAGGAAGTGGA
GGTGGCGCCAAGGCAGCAGAAGCCTCCCACGCCCGTCGAGGATTTCAAGA
CCATTCACGAGCAGCAGCAGCAGGAGAAGTACGAGGCCGCCAAGCAGCAG
CAGAATGAGCCCAAGACGTACGCGAATCTCTTCAAGTCCACGTCCTCCTC
GCCCAGCGGCTTTGTGAACGCCGCACTGCAGCAGCAGCAACAGCTCCAGC
AGCAACAGCAGCAGCAGCAGTCCATCAGCAGCAACACCTATAACTCTTCC
TCGGCAACCTCGGGTGGCGGTAATGGCAGTCAGGTTAGCTACTCCACCAC
CGCTTCGTCGTACAACAACAGCAACGGCAACTCGCGACTGGACAACGGTG
GCCCGCTGCCGCAGCGAAACAACTCGATCCGCAACAACAAGGGTGACTTT
GAGCAGCGTCGCTCGAGCAACACGCAGCAGTTCGGTGATAATCAGCAGCT
GTTTTTGGGCAATATACCGCACCACGCCAGCGAGGATGATCTGCGCGAGA
TCTTCTCACGCTTCGGAAATGTCCTGGAGCTGCGCATTTTGTCCAAGGCT
GGCAACAAGGTGCCACCAGGCATGCGCAGTCCGCTGAACTACGGATTCAT
TACCTACGACGATCCTGAGGCGGTGCAAAAGTGCCTGGCGAACTGCCCCC
TATACTTCCCGGAGAACTCACCCGATGGCCAGAAGTTGAATGTGGAGGAG
AAGAAGCCGCGTGTCCGCAACGACATGGTGCCGCGCCAGCAGATCGGTGG
CAACAACCTGAACAACAACATGGGCCGTTTGGGCGGCAACAATGGTCCGC
AGTCGCGTCCGATGGGCAACAACAATGGCAGCGGCGGTGGCATGATGCGC
AACAATGCCGGTGGCAACAATCTGCGCCAGGGCGGCGGCGGAGGAAACGG
TGCTCCTCGCCTGGGAGGCGGCGGTGGATTCGGACAGCGCCAGGATAACC
GCACCGGTGGCGGCAACAACCAGTCTAACGGACCGCTGCGCGGTGCCGGA
AATGGACAGAGTGGTGGTGGCAACTACGGACGTCGCTAAAAGCTTTCTAG
ACCAT
BS03343.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:32:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rin-RG | 2073 | CG9412-PG | 1..2073 | 17..2089 | 10365 | 100 | Plus |
rin-RF | 2073 | CG9412-PF | 1..2073 | 17..2089 | 10365 | 100 | Plus |
rin-RE | 2073 | CG9412-PE | 1..2073 | 17..2089 | 10365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:32:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rin-RG | 5382 | CG9412-RG | 349..2421 | 17..2089 | 10365 | 100 | Plus |
rin-RF | 3167 | CG9412-RF | 248..2320 | 17..2089 | 10365 | 100 | Plus |
rin-RE | 3501 | CG9412-RE | 582..2654 | 17..2089 | 10365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:32:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13649069..13650497 | 17..1445 | 7145 | 100 | Plus |
3R | 32079331 | 3R | 13651174..13651566 | 1697..2089 | 1965 | 100 | Plus |
3R | 32079331 | 3R | 13650808..13651059 | 1445..1696 | 1260 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:32:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2668 | 926..1295 | 348 | 60.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..7079 | 926..1285 | 315 | 58.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2748..2856 | 914..1022 | 239 | 68.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6944 | 774..1001 | 186 | 57.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6899 | 975..1160 | 160 | 58.2 | Plus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 631..711 | 850..772 | 121 | 63 | Minus |
Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 4504..4552 | 1107..1155 | 119 | 71.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6884 | 530..663 | 117 | 59.1 | Plus |
BS03343.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:13 Download gff for
BS03343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rin-RC | 1..2073 | 17..2089 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:13 Download gff for
BS03343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rin-RC | 734..2804 | 17..2087 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:57:05 Download gff for
BS03343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rin-RB | 349..2419 | 17..2087 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:04:13 Download gff for
BS03343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rin-RC | 729..2813 | 9..2096 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:44 Download gff for
BS03343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rin-RE | 582..2652 | 17..2087 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:44 Download gff for
BS03343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13650809..13651059 | 1446..1696 | 100 | -> | Plus |
3R | 13649069..13650497 | 17..1445 | 100 | -> | Plus |
3R | 13651174..13651564 | 1697..2087 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:57:05 Download gff for
BS03343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9474791..9476219 | 17..1445 | 100 | -> | Plus |
arm_3R | 9476531..9476781 | 1446..1696 | 100 | -> | Plus |
arm_3R | 9476896..9477286 | 1697..2087 | 100 | | Plus |
BS03343.pep Sequence
Translation from 16 to 2088
> BS03343.pep
MVMDATQSQQPSPQSVGREFVRQYYTLLNKAPNHLHRFYNHNSSYIHGES
KLVVGQREIHNRIQQLNFNDCHAKISQVDAQATLGNGVVVQVTGELSNDG
QPMRRFTQTFVLAAQSPKKYYVHNDIFRYQDLYIEDEQDGESRSENDEEH
DVQVVGGTVDQAVQVAGDVVAQQPQQQQAPPQPQAQVVVPQQVAPVAAGG
AAPQQIFYPLPAGAAAGRPVAVLPPAPQAAAVPLPAQFTVPPPQPIQNGV
VSHEELQQQQVLVPPSVSPLVQQQQPTGTPVLPIVPVPSAGFQQSPLVAP
QLIQQQQQQQPAQLPPQQQQQQQPIQQQQPLQQQQQPLAEPEEVEVAPRQ
QKPPTPVEDFKTIHEQQQQEKYEAAKQQQNEPKTYANLFKSTSSSPSGFV
NAALQQQQQLQQQQQQQQSISSNTYNSSSATSGGGNGSQVSYSTTASSYN
NSNGNSRLDNGGPLPQRNNSIRNNKGDFEQRRSSNTQQFGDNQQLFLGNI
PHHASEDDLREIFSRFGNVLELRILSKAGNKVPPGMRSPLNYGFITYDDP
EAVQKCLANCPLYFPENSPDGQKLNVEEKKPRVRNDMVPRQQIGGNNLNN
NMGRLGGNNGPQSRPMGNNNGSGGGMMRNNAGGNNLRQGGGGGNGAPRLG
GGGGFGQRQDNRTGGGNNQSNGPLRGAGNGQSGGGNYGRR*
BS03343.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:28:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rin-PG | 690 | CG9412-PG | 1..690 | 1..690 | 3628 | 100 | Plus |
rin-PF | 690 | CG9412-PF | 1..690 | 1..690 | 3628 | 100 | Plus |
rin-PE | 690 | CG9412-PE | 1..690 | 1..690 | 3628 | 100 | Plus |
rin-PB | 690 | CG9412-PB | 1..690 | 1..690 | 3628 | 100 | Plus |
Wnk-PN | 2441 | CG7177-PN | 769..1129 | 57..421 | 250 | 26.2 | Plus |