Clone BS03343 Report

Search the DGRC for BS03343

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:33
Well:43
Vector:pDNR-Dual
Associated Gene/Transcriptrin-RB
Protein status:BS03343.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03343.3prime Sequence

795 bp (736 high quality bases) assembled on 2005-11-30

> BS03343.3prime
ATGGTCTAGAAAGCTTTTAGCGACGTCCGTAGTTGCCACCACCACTCTGT
CCATTTCCGGCACCGCGCAGCGGTCCGTTAGACTGGTTGTTGCCGCCACC
GGTGCGGTTATCCTGGCGCTGTCCGAATCCACCGCCGCCTCCCAGGCGAG
GAGCACCGTTTCCTCCGCCGCCGCCCTGGCGCAGATTGTTGCCACCGGCA
TTGTTGCGCATCATGCCACCGCCGCTGCCATTGTTGTTGCCCATCGGACG
CGACTGCGGACCATTGTTGCCGCCCAAACGGCCCATGTTGTTGTTCAGGT
TGTTGCCACCGATCTGCTGGCGCGGCACCATGTCGTTGCGGACACGCGGC
TTCTTCTCCTCCACATTCAACTTCTGGCCATCGGGTGAGTTCTCCGGGAA
GTATAGGGGGCAGTTCGCCAGGCACTTTTGCACCGCCTCAGGATCGTCGT
AGGTAATGAATCCGTAGTTCAGCGGACTGCGCATGCCTGGTGGCACCTTG
TTGCCAGCCTTGGACAAAATGCGCAGCTCCAGGACATTTCCGAAGCGTGA
GAAGATCTCGCGCAGATCATCCTCGCTGGCGTGGTGCGGTATATTGCCCA
AAAACAGCTGCTGATTATCACCGAACTGCTGCGTGTTGCTCGAGCGACGC
TGCTCAAAGTCACCCTTGTTGTTGCGGATCGAGTTGTTTCGCTGCGGCAG
CGGGCCACCGTTGTCCAGTCGCGAGTTGCCGTTGCTGTTGTTGTACGACG
AAGCGGTGGTGGAGTAGCTAACCTGACTGCCATTACCGCCACCCG

BS03343.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:30:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG9412-PA 2073 rin-RA 1295..2073 795..17 3895 100 Minus
CG9412-PB 2073 rin-RB 1295..2073 795..17 3895 100 Minus
CG9412-PC 2073 rin-RC 1295..2073 795..17 3895 100 Minus
CG9412-PE 2073 rin-RE 1295..2073 795..17 3895 100 Minus
CG9412-PD 2073 rin-RD 1295..2073 795..17 3895 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
rin-RG 5382 CG9412-RG 1643..2421 795..17 3895 100 Minus
rin-RF 3167 CG9412-RF 1542..2320 795..17 3895 100 Minus
rin-RE 3501 CG9412-RE 1876..2654 795..17 3895 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13651174..13651566 409..17 1965 100 Minus
3R 32079331 3R 13650808..13651059 661..410 1260 100 Minus
3R 32079331 3R 13650363..13650497 795..661 675 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:41:27 has no hits.

BS03343.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:24:02 Download gff for BS03343.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9412-PA 1295..2073 17..795 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:38:05 Download gff for BS03343.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9412-PD 1295..2073 17..795 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:44:12 Download gff for BS03343.3prime
Subject Subject Range Query Range Percent Splice Strand
rin-RB 1643..2428 10..795 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:05:47 Download gff for BS03343.3prime
Subject Subject Range Query Range Percent Splice Strand
rin-RE 1876..2661 10..795 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:05:47 Download gff for BS03343.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13650363..13650497 661..795 100 -> Minus
3R 13650809..13651059 410..660 100 -> Minus
3R 13651174..13651573 10..409 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:44:12 Download gff for BS03343.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9476085..9476219 661..795 100 -> Minus
arm_3R 9476531..9476781 410..660 100 -> Minus
arm_3R 9476896..9477295 10..409 99   Minus

BS03343.5prime Sequence

770 bp (658 high quality bases) assembled on 2005-11-30

> BS03343.5prime
GAAGTTATCAGTCGACATGGTCATGGATGCGACCCAATCGCAGCAGCCTT
CGCCGCAATCTGTGGGACGCGAGTTTGTCCGCCAGTACTACACGCTGTTG
AACAAGGCGCCCAACCACTTGCATCGCTTCTATAACCACAACTCGTCGTA
CATCCATGGAGAGTCCAAGCTGGTGGTCGGTCAGCGGGAGATCCACAACC
GAATCCAGCAGCTGAACTTCAACGATTGCCACGCGAAGATCAGCCAGGTT
GATGCCCAGGCCACTTTGGGCAACGGTGTGGTGGTTCAGGTCACCGGGGA
GCTATCCAATGATGGCCAGCCGATGCGGCGTTTTACCCAGACGTTCGTTC
TGGCCGCTCAGTCGCCGAAGAAGTACTACGTGCACAACGACATCTTCCGC
TATCAGGATCTCTACATCGAGGACGAGCAGGATGGCGAGTCGCGATCGGA
GAACGATGAGGAGCACGATGTGCAGGTCGTCGGTGGCACTGTGGATCAAG
CTGTGCAGGTGGCCGGCGATGTAGTTGCCCAGCAGCCGCAGCAACAGCAG
GCTCCTCCGCAGCCACAGGCTCAGGTCGTGGTGCCCCAGCAGGTAGCTCC
TGTAGCGGCCGGTGGTGCTGCCCCACAGCAGATCTTCTACCCATTGCCAG
CGGGTGCTGCCGCCGGACGTCCTGTGGCTGTTTTGCCACCAGCTCCGCAA
GCCGCTGCTGTTCCACTGCCCGCGCAGTTCACCGTTCCGCCGCCACAGCC
CATCCAGAACGGGGGGGTGT

BS03343.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9412-PA 2073 rin-RA 1..746 17..762 3730 100 Plus
CG9412-PB 2073 rin-RB 1..746 17..762 3730 100 Plus
CG9412-PC 2073 rin-RC 1..746 17..762 3730 100 Plus
CG9412-PE 2073 rin-RE 1..746 17..762 3730 100 Plus
CG9412-PD 2073 rin-RD 1..746 17..762 3730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:25:39
Subject Length Description Subject Range Query Range Score Percent Strand
rin-RG 5382 CG9412-RG 349..1102 17..770 3740 99.7 Plus
rin-RF 3167 CG9412-RF 248..1001 17..770 3740 99.7 Plus
rin-RE 3501 CG9412-RE 582..1335 17..770 3740 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:25:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13649069..13649822 17..770 3740 99.7 Plus
Blast to na_te.dros performed 2015-02-13 02:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2352..2390 530..568 123 79.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6752..6884 530..663 117 59.1 Plus
roo 9092 roo DM_ROO 9092bp 1088..1125 530..567 109 76.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6817 530..574 108 71.1 Plus
roo 9092 roo DM_ROO 9092bp 1100..1144 530..574 108 71.1 Plus

BS03343.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:24:03 Download gff for BS03343.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9412-PA 1..754 17..770 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:38:06 Download gff for BS03343.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9412-PD 1..754 17..770 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:48:15 Download gff for BS03343.5prime
Subject Subject Range Query Range Percent Splice Strand
rin-RB 344..1102 9..770 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:34:45 Download gff for BS03343.5prime
Subject Subject Range Query Range Percent Splice Strand
rin-RE 577..1335 9..770 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:34:45 Download gff for BS03343.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13649064..13649822 9..770 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:48:15 Download gff for BS03343.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9474786..9475544 9..770 99   Plus

BS03343.complete Sequence

2105 bp assembled on 2008-01-02

GenBank Submission: FJ634715

> BS03343.complete
GAAGTTATCAGTCGACATGGTCATGGATGCGACCCAATCGCAGCAGCCTT
CGCCGCAATCTGTGGGACGCGAGTTTGTCCGCCAGTACTACACGCTGTTG
AACAAGGCGCCCAACCACTTGCATCGCTTCTATAACCACAACTCGTCGTA
CATCCATGGAGAGTCCAAGCTGGTGGTCGGTCAGCGGGAGATCCACAACC
GAATCCAGCAGCTGAACTTCAACGATTGCCACGCGAAGATCAGCCAGGTT
GATGCCCAGGCCACTTTGGGCAACGGTGTGGTGGTTCAGGTCACCGGGGA
GCTATCCAATGATGGCCAGCCGATGCGGCGTTTTACCCAGACGTTCGTTC
TGGCCGCTCAGTCGCCGAAGAAGTACTACGTGCACAACGACATCTTCCGC
TATCAGGATCTCTACATCGAGGACGAGCAGGATGGCGAGTCGCGATCGGA
GAACGATGAGGAGCACGATGTGCAGGTCGTCGGTGGCACTGTGGATCAAG
CTGTGCAGGTGGCCGGCGATGTAGTTGCCCAGCAGCCGCAGCAACAGCAG
GCTCCTCCGCAGCCACAGGCTCAGGTCGTGGTGCCCCAGCAGGTAGCTCC
TGTAGCGGCCGGTGGTGCTGCCCCACAGCAGATCTTCTACCCATTGCCAG
CGGGTGCTGCCGCCGGACGTCCTGTGGCTGTTTTGCCACCAGCTCCGCAA
GCCGCTGCTGTTCCACTGCCCGCGCAGTTCACCGTTCCGCCGCCACAGCC
CATCCAGAACGGTGTGGTGTCGCACGAGGAGCTGCAGCAGCAGCAGGTGC
TGGTCCCACCCAGCGTGTCTCCCCTGGTACAGCAGCAGCAGCCGACCGGC
ACGCCTGTGTTGCCCATTGTTCCAGTGCCAAGCGCGGGCTTCCAACAGTC
GCCACTGGTGGCACCACAGCTCATCCAGCAGCAGCAGCAGCAGCAACCGG
CACAGCTGCCCCCGCAGCAGCAGCAGCAGCAGCAACCTATCCAGCAGCAG
CAGCCTTTGCAACAGCAGCAACAACCGCTGGCTGAGCCCGAGGAAGTGGA
GGTGGCGCCAAGGCAGCAGAAGCCTCCCACGCCCGTCGAGGATTTCAAGA
CCATTCACGAGCAGCAGCAGCAGGAGAAGTACGAGGCCGCCAAGCAGCAG
CAGAATGAGCCCAAGACGTACGCGAATCTCTTCAAGTCCACGTCCTCCTC
GCCCAGCGGCTTTGTGAACGCCGCACTGCAGCAGCAGCAACAGCTCCAGC
AGCAACAGCAGCAGCAGCAGTCCATCAGCAGCAACACCTATAACTCTTCC
TCGGCAACCTCGGGTGGCGGTAATGGCAGTCAGGTTAGCTACTCCACCAC
CGCTTCGTCGTACAACAACAGCAACGGCAACTCGCGACTGGACAACGGTG
GCCCGCTGCCGCAGCGAAACAACTCGATCCGCAACAACAAGGGTGACTTT
GAGCAGCGTCGCTCGAGCAACACGCAGCAGTTCGGTGATAATCAGCAGCT
GTTTTTGGGCAATATACCGCACCACGCCAGCGAGGATGATCTGCGCGAGA
TCTTCTCACGCTTCGGAAATGTCCTGGAGCTGCGCATTTTGTCCAAGGCT
GGCAACAAGGTGCCACCAGGCATGCGCAGTCCGCTGAACTACGGATTCAT
TACCTACGACGATCCTGAGGCGGTGCAAAAGTGCCTGGCGAACTGCCCCC
TATACTTCCCGGAGAACTCACCCGATGGCCAGAAGTTGAATGTGGAGGAG
AAGAAGCCGCGTGTCCGCAACGACATGGTGCCGCGCCAGCAGATCGGTGG
CAACAACCTGAACAACAACATGGGCCGTTTGGGCGGCAACAATGGTCCGC
AGTCGCGTCCGATGGGCAACAACAATGGCAGCGGCGGTGGCATGATGCGC
AACAATGCCGGTGGCAACAATCTGCGCCAGGGCGGCGGCGGAGGAAACGG
TGCTCCTCGCCTGGGAGGCGGCGGTGGATTCGGACAGCGCCAGGATAACC
GCACCGGTGGCGGCAACAACCAGTCTAACGGACCGCTGCGCGGTGCCGGA
AATGGACAGAGTGGTGGTGGCAACTACGGACGTCGCTAAAAGCTTTCTAG
ACCAT

BS03343.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
rin-RG 2073 CG9412-PG 1..2073 17..2089 10365 100 Plus
rin-RF 2073 CG9412-PF 1..2073 17..2089 10365 100 Plus
rin-RE 2073 CG9412-PE 1..2073 17..2089 10365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
rin-RG 5382 CG9412-RG 349..2421 17..2089 10365 100 Plus
rin-RF 3167 CG9412-RF 248..2320 17..2089 10365 100 Plus
rin-RE 3501 CG9412-RE 582..2654 17..2089 10365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13649069..13650497 17..1445 7145 100 Plus
3R 32079331 3R 13651174..13651566 1697..2089 1965 100 Plus
3R 32079331 3R 13650808..13651059 1445..1696 1260 100 Plus
Blast to na_te.dros performed 2014-11-27 13:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2668 926..1295 348 60.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..7079 926..1285 315 58.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2748..2856 914..1022 239 68.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6944 774..1001 186 57.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6899 975..1160 160 58.2 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 631..711 850..772 121 63 Minus
Dvir\Uvir 6564 Dvir\Uvir VIRUVIR 6564bp 4504..4552 1107..1155 119 71.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6752..6884 530..663 117 59.1 Plus

BS03343.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:13 Download gff for BS03343.complete
Subject Subject Range Query Range Percent Splice Strand
rin-RC 1..2073 17..2089 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:13 Download gff for BS03343.complete
Subject Subject Range Query Range Percent Splice Strand
rin-RC 734..2804 17..2087 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:57:05 Download gff for BS03343.complete
Subject Subject Range Query Range Percent Splice Strand
rin-RB 349..2419 17..2087 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:04:13 Download gff for BS03343.complete
Subject Subject Range Query Range Percent Splice Strand
rin-RC 729..2813 9..2096 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:44 Download gff for BS03343.complete
Subject Subject Range Query Range Percent Splice Strand
rin-RE 582..2652 17..2087 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:44 Download gff for BS03343.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13650809..13651059 1446..1696 100 -> Plus
3R 13649069..13650497 17..1445 100 -> Plus
3R 13651174..13651564 1697..2087 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:57:05 Download gff for BS03343.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9474791..9476219 17..1445 100 -> Plus
arm_3R 9476531..9476781 1446..1696 100 -> Plus
arm_3R 9476896..9477286 1697..2087 100   Plus

BS03343.pep Sequence

Translation from 16 to 2088

> BS03343.pep
MVMDATQSQQPSPQSVGREFVRQYYTLLNKAPNHLHRFYNHNSSYIHGES
KLVVGQREIHNRIQQLNFNDCHAKISQVDAQATLGNGVVVQVTGELSNDG
QPMRRFTQTFVLAAQSPKKYYVHNDIFRYQDLYIEDEQDGESRSENDEEH
DVQVVGGTVDQAVQVAGDVVAQQPQQQQAPPQPQAQVVVPQQVAPVAAGG
AAPQQIFYPLPAGAAAGRPVAVLPPAPQAAAVPLPAQFTVPPPQPIQNGV
VSHEELQQQQVLVPPSVSPLVQQQQPTGTPVLPIVPVPSAGFQQSPLVAP
QLIQQQQQQQPAQLPPQQQQQQQPIQQQQPLQQQQQPLAEPEEVEVAPRQ
QKPPTPVEDFKTIHEQQQQEKYEAAKQQQNEPKTYANLFKSTSSSPSGFV
NAALQQQQQLQQQQQQQQSISSNTYNSSSATSGGGNGSQVSYSTTASSYN
NSNGNSRLDNGGPLPQRNNSIRNNKGDFEQRRSSNTQQFGDNQQLFLGNI
PHHASEDDLREIFSRFGNVLELRILSKAGNKVPPGMRSPLNYGFITYDDP
EAVQKCLANCPLYFPENSPDGQKLNVEEKKPRVRNDMVPRQQIGGNNLNN
NMGRLGGNNGPQSRPMGNNNGSGGGMMRNNAGGNNLRQGGGGGNGAPRLG
GGGGFGQRQDNRTGGGNNQSNGPLRGAGNGQSGGGNYGRR*

BS03343.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:28:52
Subject Length Description Subject Range Query Range Score Percent Strand
rin-PG 690 CG9412-PG 1..690 1..690 3628 100 Plus
rin-PF 690 CG9412-PF 1..690 1..690 3628 100 Plus
rin-PE 690 CG9412-PE 1..690 1..690 3628 100 Plus
rin-PB 690 CG9412-PB 1..690 1..690 3628 100 Plus
Wnk-PN 2441 CG7177-PN 769..1129 57..421 250 26.2 Plus