Clone Sequence Records
BS03346.3prime Sequence
826 bp (773 high quality bases) assembled on 2005-11-30
> BS03346.3prime
ATGGTCTAGAAAGCTTTCACAGCAAATCGGCGCAGACGCCACCGAACCAC
GCCATATAAAGGGGCAGCAGATAAACAACCAGAGCGCGACGCAGCGTCAT
CTTTTCTGGGGCATCGGATGATCGATTGTCATTGGCCCCGTCATGGCCTG
CATCCGTGTCCTCATCCTCATCCAGCTGCCTATGATCCTCATCCAGATCG
TTGTGATCTTGGTCGAAGTGAGTGGTGTGGATGAGCGGATTCTTGTCGTC
CACTCCGCTCGTCGGTCGAGATGTGTGCGTGGGCATGTGACCCCGTCCAC
CGGCGTCCTCGTCATCGTCGTTGTCTGCATCCACCGAAGGACGCTCCACG
TCCGGCTTATGGCTGGGTTCGAAGGGTCCCAGGCCAGAGCCCTCGTCATC
GTCCTCGTCGTCTTCGGACCCGGATCCAGAACCAGCTCCACTACCCGCAT
ATGGCAGTTCTTCTTGTTCGCTCCACTCAACATCCTGGCCGTTGTAGGCA
TTTCGAAGGTGGACAATGGCATTCTTCAGATGACTTAGTTGAGAGGCCAT
TTGAGCTGTTTGCTTAGTACTGGCAGGATTGCCTGTAAACTCCGGATTCG
AGCCGTGTTCTGTGGTGATTGAGTGCATGTATCTATCAATTGTGTGACCA
TTCCAGCACATGCCGTCCACATCGGAACTGGAGGCTATATCCTCGTTGCT
ACAAACCGAGTGCGGCAGATTGGACCAGAACTTTTTGTAGTCCTTCACTC
GCTGGCGAATGTCCCTCACGATCCTGTCCAGAATCGGTTCACGTCCACCT
CCGCTCTCATTGTCATCGTCATCGTT
BS03346.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:30:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32146-PA | 2298 | dlp-RA | 1489..2298 | 826..17 | 4050 | 100 | Minus |
| CG32146-PB | 2820 | dlp-RB | 2011..2820 | 826..17 | 4050 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dlp-RA | 3761 | CG32146-RA | 1961..2770 | 826..17 | 4050 | 100 | Minus |
| dlp-RC | 3758 | CG32146-RC | 1961..2767 | 826..17 | 3995 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14670171..14670618 | 464..17 | 2240 | 100 | Minus |
| 3L | 28110227 | 3L | 14669650..14669843 | 826..633 | 970 | 100 | Minus |
| 3L | 28110227 | 3L | 14669902..14670073 | 634..463 | 860 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 18:55:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G6 | 2042 | G6 G6_DM 2042bp | 558..600 | 416..374 | 116 | 74.4 | Minus |
BS03346.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:24:09 Download gff for
BS03346.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlp-PA | 1489..2298 | 17..826 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:38:13 Download gff for
BS03346.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32146-PB | 2011..2820 | 17..826 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:05:49 Download gff for
BS03346.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlp-RA | 1961..2775 | 12..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:15:41 Download gff for
BS03346.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlp-RA | 1961..2775 | 12..826 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:15:41 Download gff for
BS03346.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14669650..14669843 | 633..826 | 100 | -> | Minus |
| 3L | 14669904..14670073 | 463..632 | 100 | -> | Minus |
| 3L | 14670173..14670623 | 12..462 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:05:49 Download gff for
BS03346.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14662750..14662943 | 633..826 | 100 | -> | Minus |
| arm_3L | 14663004..14663173 | 463..632 | 100 | -> | Minus |
| arm_3L | 14663273..14663723 | 12..462 | 99 | | Minus |
BS03346.5prime Sequence
771 bp (646 high quality bases) assembled on 2005-11-30
> BS03346.5prime
GAAGTTATCAGTCGACATGCTACATCAGCAGCAACAACAACAACATCTGC
ATTGCAGAAGAAAAGCTACAGCAACAACAACTGCCCGCCTTGTGATATTC
AGCAGTCCTCTTCTACTATTACTACTCACCACCCACTTGCCGCCCACCTT
ACAAGCGGACAATGGCCCCGCCCCCCAAGTGGCCGCCCTTGCCGCCCCCA
ATCCGGCGGGTGGCGTAGCAGGGTCTTCGATCATCGATCAATTCAGTCCG
AATTGCAGTGCTGTGACACACATTTTCCAAGCGAGAGGAATCGATGCCAT
CGAAATTCCCCAAAAACCCAGTAACGAACGAGTCCTACGATATTGCGAGT
CCCCTTCGGTGGGCACTTGTTGCACCTACAACATGGAGACCCGCATGGCG
ATGCAATCCCGCCAGCAGCTCGAAGGGCACACCAAGGACCAGATCTCTCG
TATGTCTGGAATCCTGGGCAGCAAGGCCACAAAATTCAAAGATATTTTCA
CGGCCCTGCTCAAAGAGTCGCGAACGCAGTTCAATAGTATGTTCATCCGA
ACATACGGCGTCATTTACGAGAGAAATTCGTACGTCTTCTCGGATCTGTT
CAAGGAGTTGGAAACCTACTTCGCCAACGGTCGCGTGGACTTGCTGGAGG
TCATGGACAAGTTCTTCAATACGCTATACCAGAAGATGTTCACCGTGCTG
AACACCCAGTACACATTTGATGAAAACTACATGCGATGCGTCAGCGAGCA
CATGAAGGAGCTGAAGCCTTT
BS03346.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:30:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32146-PA | 2298 | dlp-RA | 1..755 | 17..771 | 3775 | 100 | Plus |
| CG32146-PB | 2820 | dlp-RB | 1..711 | 17..727 | 3555 | 100 | Plus |
| CG32146-PB | 2820 | dlp-RB | 1233..1277 | 727..771 | 225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:21:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dlp-RC | 3758 | CG32146-RC | 473..1227 | 17..771 | 3775 | 100 | Plus |
| dlp-RA | 3761 | CG32146-RA | 473..1227 | 17..771 | 3775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:21:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14633073..14633382 | 17..326 | 1550 | 100 | Plus |
| 3L | 28110227 | 3L | 14664834..14665070 | 490..726 | 1185 | 100 | Plus |
| 3L | 28110227 | 3L | 14664295..14664460 | 326..491 | 830 | 100 | Plus |
| 3L | 28110227 | 3L | 14667259..14667303 | 727..771 | 225 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 17:21:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6836 | 20..84 | 160 | 75.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2379 | 20..81 | 154 | 76.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2391 | 23..84 | 152 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2427 | 19..81 | 148 | 73.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2517 | 23..84 | 144 | 71.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6805..6865 | 19..83 | 144 | 73.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2406..2472 | 20..81 | 143 | 73.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6717..6782 | 21..84 | 135 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6803 | 20..84 | 131 | 69.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2402..2466 | 19..81 | 130 | 70.8 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6597..6644 | 23..72 | 128 | 76 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8053..8100 | 23..72 | 128 | 76 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1548..1612 | 13..81 | 127 | 71 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2802..2860 | 20..79 | 126 | 72.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1132..1163 | 19..50 | 124 | 87.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1112..1165 | 23..77 | 119 | 73.2 | Plus |
| rover | 7318 | rover ROVER 7318bp | 1536..1603 | 431..499 | 108 | 63.8 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3289..3322 | 18..51 | 107 | 79.4 | Plus |
BS03346.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:24:10 Download gff for
BS03346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlp-PA | 1..755 | 17..771 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:38:14 Download gff for
BS03346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32146-PA | 1..755 | 17..771 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:47:50 Download gff for
BS03346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlp-RA | 463..1227 | 3..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:06:02 Download gff for
BS03346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlp-RA | 463..1227 | 3..771 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:06:02 Download gff for
BS03346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14633063..14633382 | 3..326 | 98 | -> | Plus |
| 3L | 14664296..14664460 | 327..491 | 100 | -> | Plus |
| 3L | 14664836..14665070 | 492..726 | 100 | -> | Plus |
| 3L | 14667259..14667303 | 727..771 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:47:50 Download gff for
BS03346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14626163..14626482 | 3..326 | 98 | -> | Plus |
| arm_3L | 14657396..14657560 | 327..491 | 100 | -> | Plus |
| arm_3L | 14657936..14658170 | 492..726 | 100 | -> | Plus |
| arm_3L | 14660359..14660403 | 727..771 | 100 | | Plus |
BS03346.complete Sequence
2330 bp assembled on 2008-01-02
GenBank Submission: FJ634716
> BS03346.complete
GAAGTTATCAGTCGACATGCTACATCAGCAGCAACAACAACAACATCTGC
ATTGCAGAAGAAAAGCTACAGCAACAACAACTGCCCGCCTTGTGATATTC
AGCAGTCCTCTTCTACTATTACTACTCACCACCCACTTGCCGCCCACCTT
ACAAGCGGACAATGGCCCCGCCCCCCAAGTGGCCGCCCTTGCCGCCCCCA
ATCCGGCGGGTGGCGTAGCAGGGTCTTCGATCATCGATCAATTCAGTCCG
AATTGCAGTGCTGTGACACACATTTTCCAAGCGAGAGGAATCGATGCCAT
CGAAATTCCCCAAAAACCCAGTAACGAACGAGTCCTACGATATTGCGAGT
CCCCTTCGGTGGGCACTTGTTGCACCTACAACATGGAGACCCGCATGGCG
ATGCAATCCCGCCAGCAGCTCGAAGGGCACACCAAGGACCAGATCTCTCG
TATGTCTGGAATCCTGGGCAGCAAGGCCACAAAATTCAAAGATATTTTCA
CGGCCCTGCTCAAAGAGTCGCGAACGCAGTTCAATAGTATGTTCATCCGA
ACATACGGCGTCATTTACGAGAGAAATTCGTACGTCTTCTCGGATCTGTT
CAAGGAGTTGGAAACCTACTTCGCCAACGGTCGCGTGGACTTGCTGGAGG
TCATGGACAAGTTCTTCAATACGCTATACCAGAAGATGTTCACCGTGCTG
AACACCCAGTACACATTTGATGAAAACTACATGCGATGCGTCAGCGAGCA
CATGAAGGAGCTGAAGCCTTTCGGAGATGTTCCGGACAAGCTGTCCGTGC
AAATCAAGCGATCCTTTGTGGCCACGCGCACCTATGGCCAGGCTCTGACC
ACCGCTTCGGAGGTGGCGAAGAAGGTCCTCAATGTGCGACTGAATGCCGA
TTGTACTGGGGCTCTTACCAAGATGCAGCACTGTGGTGCTTGCAAGGGAT
ATACGGAAAAGCCCTGTACCAACTACTGTGTGAACGTCATCAAGGGATGC
CTGCACTATCAGCACGAGTTCGACAGCGAATGGGAGAACTTTGCGATGGC
CATGGACAAGGTGGCGGAACGACTGCTGGGATCCTTCAACATTGTGATGG
TGGTGGAGCCACTCAACATCAAGATCTCCGAGGCCATCATGAACTTCCAG
GATTCTGGCCAGGACATCACCAACCGCGTATTCCAAGGATGCGGTAGGCC
AAAGTTGAAGAAAATGAAACGGTCCATCAGCCCCAAACTGCAAGGAGTTC
AAATCCTCAACGCAAGGAGTCCTGTGGAGGCCGATACTCTGGACATTGAT
GAAACGTTGGACGAGGCGATTGTGCTGAGAGAACGCAGAGCTGCTGAGCC
CGGCTCACAGGAGACATCGGCGCAACAGTCTCAAGAGCAAGGAGTTGGAA
AGAGTGGAAATGGAGGAGGAGGCGGTGGCGGTAACAACAGGCGGCAACAG
CAACGTCGAAAGCAGCAGCAACAGCGACGCAAACAGCAAAACAATCGCGA
CGACAACGATGACGATGACAATGAGAGCGGAGGTGGACGTGAACCGATTC
TGGACAGGATCGTGAGGGACATTCGCCAGCGAGTGAAGGACTACAAAAAG
TTCTGGTCCAATCTGCCGCACTCGGTTTGTAGCAACGAGGATATAGCCTC
CAGTTCCGATGTGGACGGCATGTGCTGGAATGGTCACACAATTGATAGAT
ACATGCACTCAATCACCACAGAACACGGCTCGAATCCGGAGTTTACAGGC
AATCCTGCCAGTACTAAGCAAACAGCTCAAATGGCCTCTCAACTAAGTCA
TCTGAAGAATGCCATTGTCCACCTTCGAAATGCCTACAACGGCCAGGATG
TTGAGTGGAGCGAACAAGAAGAACTGCCATATGCGGGTAGTGGAGCTGGT
TCTGGATCCGGGTCCGAAGACGACGAGGACGATGACGAGGGCTCTGGCCT
GGGACCCTTCGAACCCAGCCATAAGCCGGACGTGGAGCGTCCTTCGGTGG
ATGCAGACAACGACGATGACGAGGACGCCGGTGGACGGGGTCACATGCCC
ACGCACACATCTCGACCGACGAGCGGAGTGGACGACAAGAATCCGCTCAT
CCACACCACTCACTTCGACCAAGATCACAACGATCTGGATGAGGATCATA
GGCAGCTGGATGAGGATGAGGACACGGATGCAGGCCATGACGGGGCCAAT
GACAATCGATCATCCGATGCCCCAGAAAAGATGACGCTGCGTCGCGCTCT
GGTTGTTTATCTGCTGCCCCTTTATATGGCGTGGTTCGGTGGCGTCTGCG
CCGATTTGCTGTGAAAGCTTTCTAGACCAT
BS03346.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:38:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dlp-RA | 2298 | CG32146-PA | 1..2298 | 17..2314 | 11490 | 100 | Plus |
| dlp-RC | 2295 | CG32146-PC | 1..2295 | 17..2314 | 11410 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:38:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dlp-RA | 3761 | CG32146-RA | 473..2770 | 17..2314 | 11490 | 100 | Plus |
| dlp-RC | 3758 | CG32146-RC | 473..2767 | 17..2314 | 11410 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:38:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14669293..14669843 | 1148..1698 | 2755 | 100 | Plus |
| 3L | 28110227 | 3L | 14670171..14670618 | 1867..2314 | 2240 | 100 | Plus |
| 3L | 28110227 | 3L | 14633073..14633382 | 17..326 | 1550 | 100 | Plus |
| 3L | 28110227 | 3L | 14667475..14667742 | 884..1151 | 1340 | 100 | Plus |
| 3L | 28110227 | 3L | 14664834..14665070 | 490..726 | 1185 | 100 | Plus |
| 3L | 28110227 | 3L | 14669902..14670073 | 1697..1868 | 860 | 100 | Plus |
| 3L | 28110227 | 3L | 14664295..14664460 | 326..491 | 830 | 100 | Plus |
| 3L | 28110227 | 3L | 14667259..14667417 | 727..885 | 795 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 05:38:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2290..2408 | 1402..1521 | 182 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6845 | 1429..1507 | 161 | 72 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6836 | 20..84 | 160 | 75.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6800 | 1428..1507 | 159 | 73.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2379 | 20..81 | 154 | 76.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6826 | 1429..1509 | 153 | 70.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2450 | 1362..1509 | 150 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2517 | 23..84 | 144 | 71.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6864 | 1364..1494 | 144 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6805..6865 | 19..83 | 144 | 73.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2406..2472 | 20..81 | 143 | 73.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2260..2350 | 1401..1488 | 141 | 64.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1031..1162 | 1398..1530 | 139 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6754..6906 | 1364..1520 | 136 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2592..2667 | 1429..1510 | 135 | 68.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6717..6782 | 21..84 | 135 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2451 | 1414..1513 | 133 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2777..2836 | 1434..1491 | 133 | 71.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6803 | 20..84 | 131 | 69.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2402..2466 | 19..81 | 130 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2428..2492 | 1433..1494 | 128 | 70.8 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6597..6644 | 23..72 | 128 | 76 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8053..8100 | 23..72 | 128 | 76 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1548..1612 | 13..81 | 127 | 71 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3263..3323 | 1428..1489 | 127 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2802..2860 | 20..79 | 126 | 72.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6779 | 1446..1507 | 125 | 71.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1132..1163 | 19..50 | 124 | 87.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1083..1158 | 1414..1491 | 123 | 65.4 | Plus |
| G6 | 2042 | G6 G6_DM 2042bp | 558..600 | 1915..1957 | 116 | 74.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2411..2530 | 1372..1488 | 115 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1528..1585 | 1433..1488 | 114 | 69 | Plus |
BS03346.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:14 Download gff for
BS03346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlp-RA | 1..2298 | 17..2314 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:35:18 Download gff for
BS03346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlp-RA | 454..2750 | 17..2313 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:16 Download gff for
BS03346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlp-RA | 473..2769 | 17..2313 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:04:14 Download gff for
BS03346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlp-RA | 444..2756 | 3..2319 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:15:25 Download gff for
BS03346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlp-RA | 473..2769 | 17..2313 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:15:25 Download gff for
BS03346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14664296..14664460 | 327..491 | 100 | -> | Plus |
| 3L | 14664836..14665070 | 492..726 | 100 | -> | Plus |
| 3L | 14667259..14667415 | 727..883 | 100 | -> | Plus |
| 3L | 14667475..14667741 | 884..1150 | 100 | -> | Plus |
| 3L | 14633073..14633382 | 17..326 | 100 | -> | Plus |
| 3L | 14669296..14669843 | 1151..1698 | 100 | -> | Plus |
| 3L | 14669904..14670073 | 1699..1868 | 100 | -> | Plus |
| 3L | 14670173..14670617 | 1869..2313 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:16 Download gff for
BS03346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14626173..14626482 | 17..326 | 100 | -> | Plus |
| arm_3L | 14657396..14657560 | 327..491 | 100 | -> | Plus |
| arm_3L | 14657936..14658170 | 492..726 | 100 | -> | Plus |
| arm_3L | 14660359..14660515 | 727..883 | 100 | -> | Plus |
| arm_3L | 14660575..14660841 | 884..1150 | 100 | -> | Plus |
| arm_3L | 14662396..14662943 | 1151..1698 | 100 | -> | Plus |
| arm_3L | 14663004..14663173 | 1699..1868 | 100 | -> | Plus |
| arm_3L | 14663273..14663717 | 1869..2313 | 100 | | Plus |
BS03346.pep Sequence
Translation from 16 to 2313
> BS03346.pep
MLHQQQQQQHLHCRRKATATTTARLVIFSSPLLLLLLTTHLPPTLQADNG
PAPQVAALAAPNPAGGVAGSSIIDQFSPNCSAVTHIFQARGIDAIEIPQK
PSNERVLRYCESPSVGTCCTYNMETRMAMQSRQQLEGHTKDQISRMSGIL
GSKATKFKDIFTALLKESRTQFNSMFIRTYGVIYERNSYVFSDLFKELET
YFANGRVDLLEVMDKFFNTLYQKMFTVLNTQYTFDENYMRCVSEHMKELK
PFGDVPDKLSVQIKRSFVATRTYGQALTTASEVAKKVLNVRLNADCTGAL
TKMQHCGACKGYTEKPCTNYCVNVIKGCLHYQHEFDSEWENFAMAMDKVA
ERLLGSFNIVMVVEPLNIKISEAIMNFQDSGQDITNRVFQGCGRPKLKKM
KRSISPKLQGVQILNARSPVEADTLDIDETLDEAIVLRERRAAEPGSQET
SAQQSQEQGVGKSGNGGGGGGGNNRRQQQRRKQQQQRRKQQNNRDDNDDD
DNESGGGREPILDRIVRDIRQRVKDYKKFWSNLPHSVCSNEDIASSSDVD
GMCWNGHTIDRYMHSITTEHGSNPEFTGNPASTKQTAQMASQLSHLKNAI
VHLRNAYNGQDVEWSEQEELPYAGSGAGSGSGSEDDEDDDEGSGLGPFEP
SHKPDVERPSVDADNDDDEDAGGRGHMPTHTSRPTSGVDDKNPLIHTTHF
DQDHNDLDEDHRQLDEDEDTDAGHDGANDNRSSDAPEKMTLRRALVVYLL
PLYMAWFGGVCADLL*
BS03346.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:28:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dlp-PA | 765 | CG32146-PA | 1..765 | 1..765 | 4045 | 100 | Plus |
| dlp-PC | 764 | CG32146-PC | 1..764 | 1..765 | 4028 | 99.9 | Plus |
| dally-PB | 626 | CG4974-PB | 96..411 | 116..397 | 256 | 24.7 | Plus |
| dally-PA | 626 | CG4974-PA | 96..411 | 116..397 | 256 | 24.7 | Plus |
