Clone BS03350 Report

Search the DGRC for BS03350

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:33
Well:50
Vector:pDNR-Dual
Associated Gene/Transcripttkv-RD
Protein status:BS03350.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03350.3prime Sequence

829 bp (784 high quality bases) assembled on 2005-11-30

> BS03350.3prime
ATGGTCTAGAAAGCTTTTAGACAATCTTAATGGGCACATCGATTAGACAG
TCTGTTTCCAGTCGCCCCAGCGTCTTCTTTACGCGCAGGGCAGTCAGCCG
AACGGTGGGATTCGGGTGCCAGCACTCCTGCATGATCTTGGATACGGTGG
CGAGTACATCATCCTCCTGCCAGCGTGATGGTATCGGCGGCCGGAAACCC
TTTACGCACACAACAGCGTGCATGTCCTCGAACGTGGGATCCGAGGGCAC
CACATCGTGATAGGGCAGGGCGTAGTCCTCGCAGGTGGTCGTCTTGGTGC
CCGATACGGGTGTGTAGCAGCGACGGGTCATCTCCCACAGAACGAGACCC
ACTGAATACATATCAGCCCGTTTGAACTCTTCAAACTGCTTGGGATCCAG
CTGCTGACTCAATACTTCTGGAGCCATGTAGCGTCGAGTGCCGACACGTG
GATTCTGTGCAATGTGAATGACATCCAGTTCCGAGTTGTACTTCACTGCC
AGCCCGAAGTCAGCAATAGCGCACTGCCCATTCCGCTTGACCAAAATGTT
CTTGCTCTTGATATCGCGATGAGCGATAGCTGGTTTGCCAGGGGTTCCGA
AAATCTCGTCGTGCAGGTGGGCCAATCCGGAGGCCAGCGAAAACGCCAGC
AATTGCAGCTTCTGCGGATTGATCACCGACATTGAGAGGTAATCGTGTAG
GCTGCCCATCTCGTGGTAGTCGGTGATCAGCAACATCTGTGTCCAGCTAC
CATTACCCTTGATATCGGCGGCAATGAAGCCCAAGATATTGTCGTGTCGC
ATCAGCACTGTCTGATAGATTTCAGTCTC

BS03350.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:30:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG14026-PC 1728 tkv-RC 916..1728 829..17 4065 100 Minus
CG14026-PB 1596 tkv-RB 784..1596 829..17 4065 100 Minus
CG14026-PD 1530 tkv-RD 718..1530 829..17 4065 100 Minus
CG14026-PA 1692 tkv-RA 880..1692 829..17 4065 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
tkv-RA 2846 CG14026-RA 941..1753 829..17 4065 100 Minus
tkv-RD 3616 CG14026-RD 1711..2523 829..17 4065 100 Minus
tkv-RB 3129 CG14026-RB 1224..2036 829..17 4065 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:56:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5220093..5220905 17..829 4065 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:56:33 has no hits.

BS03350.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:24:14 Download gff for BS03350.3prime
Subject Subject Range Query Range Percent Splice Strand
tkv-PC 916..1728 17..829 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:38:21 Download gff for BS03350.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14026-PA 880..1692 17..829 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:31:57 Download gff for BS03350.3prime
Subject Subject Range Query Range Percent Splice Strand
tkv-RB 1224..2042 12..829 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:10:35 Download gff for BS03350.3prime
Subject Subject Range Query Range Percent Splice Strand
tkv-RB 1224..2042 12..829 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:10:35 Download gff for BS03350.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5220087..5220905 12..829 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:31:57 Download gff for BS03350.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5220087..5220905 12..829 99   Plus

BS03350.5prime Sequence

697 bp (663 high quality bases) assembled on 2005-11-30

> BS03350.5prime
GAAGTTATCAGTCGACATGGCGCCGAAATCCAGAAAGAAGAAGGCTCATG
CCCGCTCCCTAACCTGCTACTGCGATGGCAGTTGTCCGGACAATGTAAGC
AATGGAACCTGCGAGACCAGACCCGGTGGCAGTTGCTTCAGCGCAGTCCA
ACAGCTTTACGATGAGACGACCGGGATGTACGAGGAGGAGCGTACATATG
GATGCATGCCTCCCGAAGACAACGGTGGTTTTCTCATGTGCAAGGTAGCC
GCTGTACCCCACCTGCATGGCAAGAACATTGTCTGCTGCGACAAGGAGGA
CTTCTGCAACCGTGACCTGTACCCCACCTACACACCCAAGCTGACCACAC
CAGCGCCGGATTTGCCCGTGAGCAGCGAGTCCCTACACACGCTGGCCGTC
TTTGGCTCCATCATCATCTCCCTGTCCGTGTTTATGCTGATCGTGGCTAG
CTTATGTTTCACCTACAAGCGACGCGAGAAGCTGCGCAAGCAGCCACGTC
TCATCAACTCAATGTGCAACTCACAGCTGTCGCCTTTGTCACAACTGGTG
GAACAGAGTTCGGGCTCCGGATCGGGATTACCATTGCTGGTGCAAAGAAC
CATTGCCAAGCAGATTCAGATGGTGCGACTGGTGGGCAAAGGACGATATG
GCGAGGTCTGGCTGGCCAAATGGCGCGATGAGCGGGTGGCCGTCAAG

BS03350.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG14026-PD 1530 tkv-RD 1..681 17..697 3405 100 Plus
CG14026-PC 1728 tkv-RC 230..879 48..697 3250 100 Plus
CG14026-PB 1596 tkv-RB 98..747 48..697 3250 100 Plus
CG14026-PA 1692 tkv-RA 194..843 48..697 3250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:25:19
Subject Length Description Subject Range Query Range Score Percent Strand
tkv-RD 3616 CG14026-RD 991..1674 14..697 3420 100 Plus
tkv-RA 2846 CG14026-RA 255..904 48..697 3250 100 Plus
tkv-RB 3129 CG14026-RB 538..1187 48..697 3250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:25:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5220942..5221401 697..238 2300 100 Minus
2L 23513712 2L 5221463..5221651 238..50 945 100 Minus
2L 23513712 2L 5236336..5236372 50..14 185 100 Minus
Blast to na_te.dros performed on 2015-02-13 02:25:15 has no hits.

BS03350.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:24:15 Download gff for BS03350.5prime
Subject Subject Range Query Range Percent Splice Strand
tkv-PD 1..681 17..697 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:38:22 Download gff for BS03350.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14026-PD 1..681 17..697 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:48:12 Download gff for BS03350.5prime
Subject Subject Range Query Range Percent Splice Strand
tkv-RD 983..1674 3..697 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:33:41 Download gff for BS03350.5prime
Subject Subject Range Query Range Percent Splice Strand
tkv-RD 983..1674 3..697 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:33:41 Download gff for BS03350.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5220942..5221400 239..697 100 <- Minus
2L 5221463..5221650 51..238 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:48:12 Download gff for BS03350.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5220942..5221400 239..697 100 <- Minus
arm_2L 5221463..5221650 51..238 100 <- Minus

BS03350.complete Sequence

1562 bp (1562 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634717

> BS03350.complete
GAAGTTATCAGTCGACATGGCGCCGAAATCCAGAAAGAAGAAGGCTCATG
CCCGCTCCCTAACCTGCTACTGCGATGGCAGTTGTCCGGACAATGTAAGC
AATGGAACCTGCGAGACCAGACCCGGTGGCAGTTGCTTCAGCGCAGTCCA
ACAGCTTTACGATGAGACGACCGGGATGTACGAGGAGGAGCGTACATATG
GATGCATGCCTCCCGAAGACAACGGTGGTTTTCTCATGTGCAAGGTAGCC
GCTGTACCCCACCTGCATGGCAAGAACATTGTCTGCTGCGACAAGGAGGA
CTTCTGCAACCGTGACCTGTACCCCACCTACACACCCAAGCTGACCACAC
CAGCGCCGGATTTGCCCGTGAGCAGCGAGTCCCTACACACGCTGGCCGTC
TTTGGCTCCATCATCATCTCCCTGTCCGTGTTTATGCTGATCGTGGCTAG
CTTATGTTTCACCTACAAGCGACGCGAGAAGCTGCGCAAGCAGCCACGTC
TCATCAACTCAATGTGCAACTCACAGCTGTCGCCTTTGTCACAACTGGTG
GAACAGAGTTCGGGCTCCGGATCGGGATTACCATTGCTGGTGCAAAGAAC
CATTGCCAAGCAGATTCAGATGGTGCGACTGGTGGGCAAAGGACGATATG
GCGAGGTCTGGCTGGCCAAATGGCGCGATGAGCGGGTGGCCGTCAAGACC
TTCTTTACGACCGAAGAGGCTTCTTGGTTCCGCGAGACTGAAATCTATCA
GACAGTGCTGATGCGACACGACAATATCTTGGGCTTCATTGCCGCCGATA
TCAAGGGTAATGGTAGCTGGACACAGATGTTGCTGATCACCGACTACCAC
GAGATGGGCAGCCTACACGATTACCTCTCAATGTCGGTGATCAATCCGCA
GAAGCTGCAATTGCTGGCGTTTTCGCTGGCCTCCGGATTGGCCCACCTGC
ACGACGAGATTTTCGGAACCCCTGGCAAACCAGCTATCGCTCATCGCGAT
ATCAAGAGCAAGAACATTTTGGTCAAGCGGAATGGGCAGTGCGCTATTGC
TGACTTCGGGCTGGCAGTGAAGTACAACTCGGAACTGGATGTCATTCACA
TTGCACAGAATCCACGTGTCGGCACTCGACGCTACATGGCTCCAGAAGTA
TTGAGTCAGCAGCTGGATCCCAAGCAGTTTGAAGAGTTCAAACGGGCTGA
TATGTATTCAGTGGGTCTCGTTCTGTGGGAGATGACCCGTCGCTGCTACA
CACCCGTATCGGGCACCAAGACGACCACCTGCGAGGACTACGCCCTGCCC
TATCACGATGTGGTGCCCTCGGATCCCACGTTCGAGGACATGCACGCTGT
TGTGTGCGTAAAGGGTTTCCGGCCGCCGATACCATCACGCTGGCAGGAGG
ATGATGTACTCGCCACCGTATCCAAGATCATGCAGGAGTGCTGGCACCCG
AATCCCACCGTTCGGCTGACTGCCCTGCGCGTAAAGAAGACGCTGGGGCG
ACTGGAAACAGACTGTCTAATCGATGTGCCCATTAAGATTGTCTAAAAGC
TTTCTAGACCAT

BS03350.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
tkv-RD 1530 CG14026-PD 1..1530 17..1546 7650 100 Plus
tkv-RA 1692 CG14026-PA 194..1692 48..1546 7495 100 Plus
tkv-RB 1596 CG14026-PB 98..1596 48..1546 7495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
tkv-RD 3616 CG14026-RD 991..2523 14..1546 7665 100 Plus
tkv-RA 2846 CG14026-RA 255..1753 48..1546 7495 100 Plus
tkv-RB 3129 CG14026-RB 538..2036 48..1546 7495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5220093..5221401 1546..238 6545 100 Minus
2L 23513712 2L 5221463..5221651 238..50 945 100 Minus
2R 25286936 2R 8959513..8959637 686..810 190 76.8 Plus
2L 23513712 2L 5236336..5236372 50..14 185 100 Minus
Blast to na_te.dros performed on 2014-11-28 07:48:16 has no hits.

BS03350.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:53 Download gff for BS03350.complete
Subject Subject Range Query Range Percent Splice Strand
tkv-RD 1..1530 17..1546 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:45:47 Download gff for BS03350.complete
Subject Subject Range Query Range Percent Splice Strand
tkv-RD 990..2517 17..1544 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:13 Download gff for BS03350.complete
Subject Subject Range Query Range Percent Splice Strand
tkv-RD 994..2521 17..1544 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:53 Download gff for BS03350.complete
Subject Subject Range Query Range Percent Splice Strand
tkv-RD 979..2525 3..1551 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:04:17 Download gff for BS03350.complete
Subject Subject Range Query Range Percent Splice Strand
tkv-RD 994..2521 17..1544 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:04:17 Download gff for BS03350.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5220095..5221400 239..1544 100 <- Minus
2L 5221463..5221650 51..238 100 <- Minus
2L 5236336..5236369 17..50 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:13 Download gff for BS03350.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5220095..5221400 239..1544 100 <- Minus
arm_2L 5221463..5221650 51..238 100 <- Minus
arm_2L 5236336..5236369 17..50 100   Minus

BS03350.pep Sequence

Translation from 16 to 1545

> BS03350.pep
MAPKSRKKKAHARSLTCYCDGSCPDNVSNGTCETRPGGSCFSAVQQLYDE
TTGMYEEERTYGCMPPEDNGGFLMCKVAAVPHLHGKNIVCCDKEDFCNRD
LYPTYTPKLTTPAPDLPVSSESLHTLAVFGSIIISLSVFMLIVASLCFTY
KRREKLRKQPRLINSMCNSQLSPLSQLVEQSSGSGSGLPLLVQRTIAKQI
QMVRLVGKGRYGEVWLAKWRDERVAVKTFFTTEEASWFRETEIYQTVLMR
HDNILGFIAADIKGNGSWTQMLLITDYHEMGSLHDYLSMSVINPQKLQLL
AFSLASGLAHLHDEIFGTPGKPAIAHRDIKSKNILVKRNGQCAIADFGLA
VKYNSELDVIHIAQNPRVGTRRYMAPEVLSQQLDPKQFEEFKRADMYSVG
LVLWEMTRRCYTPVSGTKTTTCEDYALPYHDVVPSDPTFEDMHAVVCVKG
FRPPIPSRWQEDDVLATVSKIMQECWHPNPTVRLTALRVKKTLGRLETDC
LIDVPIKIV*

BS03350.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:44
Subject Length Description Subject Range Query Range Score Percent Strand
tkv-PD 509 CG14026-PD 1..509 1..509 2707 100 Plus
tkv-PA 563 CG14026-PA 61..563 7..509 2652 99.2 Plus
tkv-PB 531 CG14026-PB 29..531 7..509 2652 99.2 Plus
tkv-PC 575 CG14026-PC 73..575 7..509 2652 99.2 Plus
babo-PB 622 CG8224-PB 115..617 1..499 1046 43.5 Plus