Clone Sequence Records
BS03371.3prime Sequence
357 bp (356 high quality bases) assembled on 2005-11-30
> BS03371.3prime
ATGGTCTAGAAAGCTTTTAGTGGCCGTACTTCTGGAAATCCCACTCGCGG
TTGTCCAGTGGGCATACCTGGCGCGTCTTTAGCCAGCGAGAGATGCAGTG
GAAATGGAAGGCGTGGTTGCAGACGCCCCAGGCCACGGTGCACTCCTCGC
TAGTGGCGGACGCCTGGTTCGCCTGACACTCGATGCACAAGTCCATGATG
TGGTTGCGGCAGATGGCGCAGTTGTCCACCACGATGTCCCAGGCCCACAG
AGCCACGGCGTTCCACTTCTTCACCTCAAAGCGCTTCTTATCGCCCTTGC
TGCTGCTGGAGGGAACCTCGTATCCATCCTCGTCGACTTCCATGTCGACT
GATAACT
BS03371.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:31:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16982-PA | 327 | Roc1a-RA | 1..327 | 343..17 | 1635 | 100 | Minus |
CG16988-PA | 369 | Roc1b-RA | 160..219 | 229..170 | 175 | 91.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:53:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Roc1a-RD | 1145 | CG16982-RD | 144..473 | 344..15 | 1650 | 100 | Minus |
Roc1a-RA | 696 | CG16982-RA | 144..473 | 344..15 | 1650 | 100 | Minus |
Roc1a-RC | 1229 | CG16982-RC | 305..557 | 267..15 | 1265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:53:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 647702..647925 | 238..15 | 1120 | 100 | Minus |
3L | 28110227 | 3L | 358134..358398 | 285..18 | 435 | 78.4 | Minus |
X | 23542271 | X | 647447..647525 | 344..266 | 395 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 15:53:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbif\P-element_O | 2986 | Dbif\P-element_O P_O 2986bp Derived from X71634. | 2227..2273 | 239..195 | 104 | 72.3 | Minus |
BS03371.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:24:42 Download gff for
BS03371.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roc1a-PA | 1..327 | 17..343 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:38:57 Download gff for
BS03371.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16982-PA | 1..327 | 17..343 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-14 14:59:17 Download gff for
BS03371.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roc1a-RA | 139..476 | 12..348 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:16 Download gff for
BS03371.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roc1a-RA | 139..476 | 12..348 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:16 Download gff for
BS03371.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 647442..647525 | 266..348 | 97 | -> | Minus |
X | 647610..647637 | 238..265 | 100 | -> | Minus |
X | 647703..647928 | 12..237 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-14 14:59:17 Download gff for
BS03371.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 541475..541558 | 266..348 | 97 | -> | Minus |
arm_X | 541643..541670 | 238..265 | 100 | -> | Minus |
arm_X | 541736..541961 | 12..237 | 99 | | Minus |
BS03371.5prime Sequence
349 bp (349 high quality bases) assembled on 2005-11-28
> BS03371.5prime
CAGTCGACATGGAAGTCGACGAGGATGGATACGAGGTTCCCTCCAGCAGC
AGCAAGGGCGATAAGAAGCGCTTTGAGGTGAAGAAGTGGAACGCCGTGGC
TCTGTGGGCCTGGGACATCGTGGTGGACAACTGCGCCATCTGCCGCAACC
ACATCATGGACTTGTGCATCGAGTGTCAGGCGAACCAGGCGTCCGCCACT
AGCGAGGAGTGCACCGTGGCCTGGGGCGTCTGCAACCACGCCTTCCATTT
CCACTGCATCTCTCGCTGGCTAAAGACGCGCCAGGTATGCCCACTGGACA
ACCGCGAGTGGGATTTCCAGAAGTACGGCCACTAAAAGCTTTCTAGACC
BS03371.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:31:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16982-PA | 327 | Roc1a-RA | 1..327 | 9..335 | 1635 | 100 | Plus |
CG16988-PA | 369 | Roc1b-RA | 160..219 | 123..182 | 175 | 91.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:33:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Roc1a-RD | 1145 | CG16982-RD | 144..473 | 8..337 | 1650 | 100 | Plus |
Roc1a-RA | 696 | CG16982-RA | 144..473 | 8..337 | 1650 | 100 | Plus |
Roc1a-RC | 1229 | CG16982-RC | 305..557 | 85..337 | 1265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:33:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 647702..647925 | 114..337 | 1120 | 100 | Plus |
3L | 28110227 | 3L | 358134..358398 | 67..334 | 435 | 78.4 | Plus |
X | 23542271 | X | 647447..647525 | 8..86 | 395 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 09:33:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbif\P-element_O | 2986 | Dbif\P-element_O P_O 2986bp Derived from X71634. | 2227..2273 | 113..157 | 104 | 72.3 | Plus |
BS03371.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:24:43 Download gff for
BS03371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roc1a-PA | 1..327 | 9..335 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:38:58 Download gff for
BS03371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16982-PA | 1..327 | 9..335 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:49:39 Download gff for
BS03371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roc1a-RA | 141..476 | 1..340 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:04:21 Download gff for
BS03371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roc1a-RA | 141..476 | 1..340 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:04:21 Download gff for
BS03371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 647444..647525 | 1..86 | 95 | -> | Plus |
X | 647610..647637 | 87..114 | 100 | -> | Plus |
X | 647703..647928 | 115..340 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:49:39 Download gff for
BS03371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 541477..541558 | 1..86 | 95 | -> | Plus |
arm_X | 541643..541670 | 87..114 | 100 | -> | Plus |
arm_X | 541736..541961 | 115..340 | 99 | | Plus |
BS03371.complete Sequence
359 bp (359 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634718
> BS03371.complete
GAAGTTATCAGTCGACATGGAAGTCGACGAGGATGGATACGAGGTTCCCT
CCAGCAGCAGCAAGGGCGATAAGAAGCGCTTTGAGGTGAAGAAGTGGAAC
GCCGTGGCTCTGTGGGCCTGGGACATCGTGGTGGACAACTGCGCCATCTG
CCGCAACCACATCATGGACTTGTGCATCGAGTGTCAGGCGAACCAGGCGT
CCGCCACTAGCGAGGAGTGCACCGTGGCCTGGGGCGTCTGCAACCACGCC
TTCCATTTCCACTGCATCTCTCGCTGGCTAAAGACGCGCCAGGTATGCCC
ACTGGACAACCGCGAGTGGGATTTCCAGAAGTACGGCCACTAAAAGCTTT
CTAGACCAT
BS03371.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:34:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Roc1a-RD | 327 | CG16982-PD | 1..327 | 17..343 | 1635 | 100 | Plus |
Roc1a-RA | 327 | CG16982-PA | 1..327 | 17..343 | 1635 | 100 | Plus |
Roc1a-RC | 411 | CG16982-PC | 161..411 | 93..343 | 1255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:34:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Roc1a-RD | 1145 | CG16982-RD | 144..473 | 16..345 | 1650 | 100 | Plus |
Roc1a-RA | 696 | CG16982-RA | 144..473 | 16..345 | 1650 | 100 | Plus |
Roc1a-RC | 1229 | CG16982-RC | 305..557 | 93..345 | 1265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:34:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 647702..647925 | 122..345 | 1120 | 100 | Plus |
3L | 28110227 | 3L | 358134..358398 | 75..342 | 435 | 78.4 | Plus |
X | 23542271 | X | 647447..647525 | 16..94 | 395 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:34:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbif\P-element_O | 2986 | Dbif\P-element_O P_O 2986bp Derived from X71634. | 2227..2273 | 121..165 | 104 | 72.3 | Plus |
BS03371.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:54 Download gff for
BS03371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roc1a-RA | 1..327 | 17..343 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:19 Download gff for
BS03371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roc1a-RA | 156..493 | 12..348 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:18:50 Download gff for
BS03371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roc1a-RA | 145..469 | 17..341 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:55 Download gff for
BS03371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roc1a-RA | 156..493 | 12..348 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:50:58 Download gff for
BS03371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roc1a-RA | 145..469 | 17..341 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:50:58 Download gff for
BS03371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 647703..647921 | 123..341 | 100 | | Plus |
X | 647448..647525 | 17..94 | 100 | -> | Plus |
X | 647610..647637 | 95..122 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:18:50 Download gff for
BS03371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 541481..541558 | 17..94 | 100 | -> | Plus |
arm_X | 541643..541670 | 95..122 | 100 | -> | Plus |
arm_X | 541736..541954 | 123..341 | 100 | | Plus |
BS03371.pep Sequence
Translation from 16 to 342
> BS03371.pep
MEVDEDGYEVPSSSSKGDKKRFEVKKWNAVALWAWDIVVDNCAICRNHIM
DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE
WDFQKYGH*
BS03371.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Roc1a-PD | 108 | CG16982-PD | 1..108 | 1..108 | 619 | 100 | Plus |
Roc1a-PA | 108 | CG16982-PA | 1..108 | 1..108 | 619 | 100 | Plus |
Roc1a-PC | 136 | CG16982-PC | 1..136 | 1..108 | 580 | 79.4 | Plus |
Roc1b-PA | 122 | CG16988-PA | 21..121 | 9..107 | 395 | 67.6 | Plus |
Roc2-PB | 113 | CG8998-PB | 6..112 | 5..107 | 274 | 43.9 | Plus |