Clone BS03404 Report

Search the DGRC for BS03404

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:34
Well:4
Vector:pDNR-Dual
Associated Gene/Transcriptf-cup-RB
Protein status:BS03404.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03404.3prime Sequence

900 bp (753 high quality bases) assembled on 2005-01-12

> BS03404.3prime
ATGGTCTAGAAAGCTTCCATGTGGGTATGCGATCGCGCAAATACGACATG
ATGGCGTCAGTGCCCTTCATCAGGATTTGGTGGCGGGGCTGTCGAAATGG
ATTGCCCACCAGCTCCAAGTGAGTTATGTTTGTCAGGTTCCCCAAAATTG
GTGGCACTGTCTCGATGTCGTTATTGCGCAAATCCAATGTGCTCAAACGT
CGCATGTTCTGCAGACCCGATACATTTAACATTTTTATGTGGTTCTCACT
GGCAATGAGGATCTCCAGGCCTTGCAGCTCGTACACACAGTTGGGAATAC
ACGGAAAGCGATTGTTTGCAATGTTTAGTTCACGCAGTGTATTCAAGACA
CCAAACTCCGTGGGCAGGTCATTCAACAGATTGTTGGACAAATTCAAGAA
AGATATACGTGTAAACTGGGAGATGAACTGTGGCACATAGCCGATGACAT
TGTTGGATAAAACTAGTTCCGTAACTAAATCTTTCATGTGCTGCAGTCCA
TTGGGCAAAGTGCTCAGCTGGTTGCGCGCAAAGTCCACCACATGCACACC
CTCATCCCTGGCGATCTGGAACACCTGGTCAGGCACTGACGTGAGCTCCT
CCAGATTGACAGCTAATGTACGTGTATGTCGTAGTTTGTATCTATCCGGA
AAGTTTCCGGGTATATCACCATCGTCCATTTGGCCACCACGCAAACGGGT
AACACTGATGCCCGCTGACGTGGAAGCGTCGTCGACGCCACCTCCCTCCT
CCTTGGCCTTCGCCACAGCTCTATCGTGCAGAGTCTTTAAGATCCTCGTT
GTTCCACACTGTAGGATGTCGCGTCTGATTGTCTTTATGGGATTTCCCTC
CACCTGCAGGCTAATCAAATGAGCCAAGGAGGACAATGTGACTGGCAGCA

BS03404.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:31:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9611-PA 2082 CG9611-RA 1199..2080 900..19 4385 99.8 Minus
CG9611-PB 1953 CG9611-RB 1070..1951 900..19 4385 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:58:01
Subject Length Description Subject Range Query Range Score Percent Strand
f-cup-RE 2219 CG9611-RE 1062..1948 900..14 4405 99.8 Minus
f-cup-RB 2470 CG9611-RB 1313..2199 900..14 4405 99.8 Minus
f-cup-RA 2558 CG9611-RA 1401..2287 900..14 4405 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13696827..13697085 642..900 1280 99.6 Plus
3R 32079331 3R 13695961..13696150 309..498 950 100 Plus
3R 32079331 3R 13695706..13695892 123..309 935 100 Plus
3R 32079331 3R 13696203..13696348 498..643 730 100 Plus
3R 32079331 3R 13695534..13695642 14..122 530 99.1 Plus
Blast to na_te.dros performed on 2015-02-11 09:58:00 has no hits.

BS03404.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:24:49 Download gff for BS03404.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9611-PA 1200..2082 17..899 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:39:04 Download gff for BS03404.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9611-PB 1071..1953 17..899 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:49:11 Download gff for BS03404.3prime
Subject Subject Range Query Range Percent Splice Strand
f-cup-RA 1402..2287 14..899 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:59:36 Download gff for BS03404.3prime
Subject Subject Range Query Range Percent Splice Strand
f-cup-RA 1402..2287 14..899 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:59:36 Download gff for BS03404.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13695534..13695642 14..122 99 <- Plus
3R 13695706..13695891 123..308 100 <- Plus
3R 13695961..13696149 309..497 100 <- Plus
3R 13696203..13696346 498..641 100 <- Plus
3R 13696827..13697084 642..899 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:49:11 Download gff for BS03404.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9521256..9521364 14..122 99 <- Plus
arm_3R 9521428..9521613 123..308 100 <- Plus
arm_3R 9521683..9521871 309..497 100 <- Plus
arm_3R 9521925..9522068 498..641 100 <- Plus
arm_3R 9522549..9522806 642..899 99   Plus

BS03404.5prime Sequence

811 bp (778 high quality bases) assembled on 2005-11-30

> BS03404.5prime
GAAGTTATCAGTCGACATGAGTGACAAAACCGGCCGAGGACGGAGTAACC
CCTCCACCAGCCGGATTCCTCGCAGCGCACAAAGTCCGCGCCAAGCCTCA
GTGGTCCACTCGCCCAGGACAAACTGTGCCTTTCGCCCGATTTTTCACGA
GAGGAGCACTCACGAGGACGACCAGGTGCTCACCCAAGAACTATGGAAGC
TGGCGCGTAAATCGGGCACCCTGAATCTTTCCAACAAAGCATTGGCCAGA
GTGCCCAAGCGACTGTACGACATTAACGAGGCGGATGCGGACAGCAAGGC
CGTAAATCTAGAGCAGCTAACGATTAAAGAGGAGGATGCCTGGTGGAACC
AAGTGCCATTGAACAACCTGGACCTGAGCTCAAACACCTTAACGCACATA
TCGCCAAAGATCGAGAATCTGCAATCACTTACCGTGCTTACGCTGCACGA
TAATGCTTTGGTGGAGTTACCACCGGAGATCGGCAAGCTGGAAAAGCTAG
TGCGCCTTAATGTGAGCCACAACAAACTCAGCCAGCTGCCGCGTGCGATG
TACAGTCTACCGGAGCTGCGGCACCTCAACATCTCGTACAACGAGTTCGT
CGAACTTAATCCGGACATCAGTGACCTTCACATGCTTGAGTTTTTGGACG
GTGGGCATAACAATATTCAATCCCTGCCCGGTGGCATTGGGTTCCTGGTG
CGTCTAACTGCGCTCTTGTTGCCCTATAATCACATCAAGGAACTGCCGCC
CGATCTTGTTAACATGCGCTCTTTGCAAAAGATTGATCTGATGCATAATG
ATCTGACCAGC

BS03404.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:31:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9611-PA 2082 CG9611-RA 126..924 13..811 3995 100 Plus
CG9611-PB 1953 CG9611-RB 1..795 17..811 3975 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
f-cup-RH 2795 CG9611-RH 240..1038 13..811 3995 100 Plus
f-cup-RG 2797 CG9611-RG 240..1038 13..811 3995 100 Plus
f-cup-RF 2885 CG9611-RF 328..1126 13..811 3995 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13699068..13699306 251..13 1195 100 Minus
3R 32079331 3R 13697834..13698039 647..442 1030 100 Minus
3R 32079331 3R 13698091..13698283 442..250 965 100 Minus
3R 32079331 3R 13697523..13697647 770..646 625 100 Minus
3R 32079331 3R 13697424..13697464 811..771 205 100 Minus
Blast to na_te.dros performed on 2015-02-02 11:40:56 has no hits.

BS03404.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:24:50 Download gff for BS03404.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9611-PA 124..924 10..811 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:39:05 Download gff for BS03404.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9611-PA 124..924 10..811 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:52:38 Download gff for BS03404.5prime
Subject Subject Range Query Range Percent Splice Strand
f-cup-RF 326..1126 10..811 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:35:17 Download gff for BS03404.5prime
Subject Subject Range Query Range Percent Splice Strand
f-cup-RF 326..1126 10..811 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:35:17 Download gff for BS03404.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13697523..13697646 647..770 100 <- Minus
3R 13698091..13698281 252..442 100 <- Minus
3R 13697835..13698038 443..646 100 <- Minus
3R 13697424..13697464 771..811 100 <- Minus
3R 13699068..13699308 10..251 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:52:38 Download gff for BS03404.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9523146..9523186 771..811 100 <- Minus
arm_3R 9523245..9523368 647..770 100 <- Minus
arm_3R 9523557..9523760 443..646 100 <- Minus
arm_3R 9523813..9524003 252..442 100 <- Minus
arm_3R 9524790..9525030 10..251 99   Minus

BS03404.complete Sequence

1985 bp assembled on 2007-10-17

GenBank Submission: FJ634719

> BS03404.complete
GAAGTTATCAGTCGACATGAGTGACAAAACCGGCCGAGGACGGAGTAACC
CCTCCACCAGCCGGATTCCTCGCAGCGCACAAAGTCCGCGCCAAGCCTCA
GTGGTCCACTCGCCCAGGACAAACTGTGCCTTTCGCCCGATTTTTCACGA
GAGGAGCACTCACGAGGACGACCAGGTGCTCACCCAAGAACTATGGAAGC
TGGCGCGTAAATCGGGCACCCTGAATCTTTCCAACAAAGCATTGGCCAGA
GTGCCCAAGCGACTGTACGACATTAACGAGGCGGATGCGGACAGCAAGGC
CGTAAATCTAGAGCAGCTAACGATTAAAGAGGAGGATGCCTGGTGGAACC
AAGTGCCATTGAACAACCTGGACCTGAGCTCAAACACCTTAACGCACATA
TCGCCAAAGATCGAGAATCTGCAATCACTTACCGTGCTTACGCTGCACGA
TAATGCTTTGGTGGAGTTACCACCGGAGATCGGCAAGCTGGAAAAGCTAG
TGCGCCTTAATGTGAGCCACAACAAACTCAGCCAGCTGCCGCGTGCGATG
TACAGTCTACCGGAGCTGCGGCACCTCAACATCTCGTACAACGAGTTCGT
CGAACTTAATCCGGACATCAGTGACCTTCACATGCTTGAGTTTTTGGACG
GTGGGCATAACAATATTCAATCCCTGCCCGGTGGCATTGGGTTCCTGGTG
CGTCTAACTGCGCTCTTGTTGCCCTATAATCACATCAAGGAACTGCCGCC
CGATCTTGTTAACATGCGCTCTTTGCAAAAGATTGATCTGATGCATAATG
ATCTGACCAGCTTGCCGGAGGATATGGGCCTTTTGAGAAAGCTGGATTGC
CTTTATCTGCAGCATAACGACATACTGGAACTGCCCGAGTTCGAGGGAAA
CGAGGCCTTGAACGAGCTACATGCCAGCAATAATTTCATCAAGATCATAC
CAAAAGCTATGTGTAGTAACTTGCCACACCTGAAGATACTGGATTTGCGG
GACAATAAGATCACGGAGCTGCCCGACGAGCTGTGCCTGCTGCGCAATCT
AAACCGTCTCGATGTGTCCAATAATACGATCAGCGTGCTGCCAGTCACAT
TGTCCTCCTTGGCTCATCTGATTAGCCTGCAGGTGGAGGGAAATCCCATA
AAGACAATCAGACGCGACATCCTACAGTGTGGAACAACGAGGATCTTAAA
GACTCTGCACGATAGAGCTGTGGCGAAGGCCAAGGAGGAGGGAGGTGGCG
TCGACGACGCTTCCACGTCAGCGGGCATCAGTGTTACCCGTTTGCGTGGT
GGCCAAATGGACGATGGTGATATACCCGGAAACTTTCCGGATAGATACAA
ACTACGACATACACGTACATTAGCTGTCAATCTGGAGGAGCTCACGTCAG
TGCCTGACCAGGTGTTCCAGATCGCCAGGGATGAGGGTGTGCATGTGGTG
GACTTTGCGCGCAACCAGCTGAGCACTTTGCCCAATGGACTGCAGCACAT
GAAAGATTTAGTTACGGAACTAGTTTTATCCAACAATGTCATCGGCTATG
TGCCACAGTTCATCTCCCAGTTTACACGTATATCTTTCTTGAATTTGTCC
AACAATCTGTTGAATGACCTGCCCACGGAGTTTGGTGTCTTGAATACACT
GCGTGAACTAAACATTGCAAACAATCGCTTTCCGTGTATTCCCAACTGTG
TGTACGAGCTGCAAGGCCTGGAGATCCTCATTGCCAGTGAGAACCACATA
AAAATGTTAAATGTATCGGGTCTGCAGAACATGCGACGTTTGAGCACATT
GGATTTGCGCAATAACGACATCGAGACAGTGCCACCAATTTTGGGGAACC
TGACAAACATAACTCACTTGGAGCTGGTGGGCAATCCATTTCGACAGCCC
CGCCACCAAATCCTGATGAAGGGCACTGACGCCATCATGTCGTATTTGCG
CGATCGCATACCCACATAGAAGCTTTCTAGACCAT

BS03404.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:08:15
Subject Length Description Subject Range Query Range Score Percent Strand
f-cup-RA 2082 CG9611-PA 126..2082 13..1969 9785 100 Plus
f-cup-RB 1953 CG9611-PB 1..1953 17..1969 9765 100 Plus
f-cup-RE 1863 CG9611-PE 146..1863 252..1969 8590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
f-cup-RB 2470 CG9611-RB 240..2199 13..1972 9800 100 Plus
f-cup-RA 2558 CG9611-RA 328..2287 13..1972 9800 100 Plus
f-cup-RE 2219 CG9611-RE 228..1948 252..1972 8605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13696827..13697229 1344..942 2015 100 Minus
3R 32079331 3R 13699068..13699306 251..13 1195 100 Minus
3R 32079331 3R 13697834..13698039 647..442 1030 100 Minus
3R 32079331 3R 13698091..13698283 442..250 965 100 Minus
3R 32079331 3R 13695961..13696150 1677..1488 950 100 Minus
3R 32079331 3R 13695706..13695892 1863..1677 935 100 Minus
3R 32079331 3R 13697292..13697464 943..771 865 100 Minus
3R 32079331 3R 13696203..13696348 1488..1343 730 100 Minus
3R 32079331 3R 13697523..13697647 770..646 625 100 Minus
3R 32079331 3R 13695534..13695642 1972..1864 545 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:08:14 has no hits.

BS03404.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:17 Download gff for BS03404.complete
Subject Subject Range Query Range Percent Splice Strand
CG9611-RA 124..2082 10..1969 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:33:05 Download gff for BS03404.complete
Subject Subject Range Query Range Percent Splice Strand
CG9611-RB 234..2195 10..1972 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:29 Download gff for BS03404.complete
Subject Subject Range Query Range Percent Splice Strand
f-cup-RA 332..2284 17..1969 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:52 Download gff for BS03404.complete
Subject Subject Range Query Range Percent Splice Strand
CG9611-RB 240..2192 17..1969 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:53 Download gff for BS03404.complete
Subject Subject Range Query Range Percent Splice Strand
f-cup-RA 332..2284 17..1969 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:53 Download gff for BS03404.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13695537..13695642 1864..1969 100 <- Minus
3R 13695706..13695891 1678..1863 100 <- Minus
3R 13695961..13696149 1489..1677 100 <- Minus
3R 13696203..13696346 1345..1488 100 <- Minus
3R 13696827..13697227 944..1344 100 <- Minus
3R 13697292..13697464 771..943 100 <- Minus
3R 13697523..13697646 647..770 100 <- Minus
3R 13697835..13698038 443..646 100 <- Minus
3R 13698091..13698281 252..442 100 <- Minus
3R 13699068..13699302 17..251 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:29 Download gff for BS03404.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9521259..9521364 1864..1969 100 <- Minus
arm_3R 9521428..9521613 1678..1863 100 <- Minus
arm_3R 9521683..9521871 1489..1677 100 <- Minus
arm_3R 9521925..9522068 1345..1488 100 <- Minus
arm_3R 9522549..9522949 944..1344 100 <- Minus
arm_3R 9523014..9523186 771..943 100 <- Minus
arm_3R 9523245..9523368 647..770 100 <- Minus
arm_3R 9523557..9523760 443..646 100 <- Minus
arm_3R 9523813..9524003 252..442 100 <- Minus
arm_3R 9524790..9525024 17..251 100   Minus

BS03404.pep Sequence

Translation from 16 to 1968

> BS03404.pep
MSDKTGRGRSNPSTSRIPRSAQSPRQASVVHSPRTNCAFRPIFHERSTHE
DDQVLTQELWKLARKSGTLNLSNKALARVPKRLYDINEADADSKAVNLEQ
LTIKEEDAWWNQVPLNNLDLSSNTLTHISPKIENLQSLTVLTLHDNALVE
LPPEIGKLEKLVRLNVSHNKLSQLPRAMYSLPELRHLNISYNEFVELNPD
ISDLHMLEFLDGGHNNIQSLPGGIGFLVRLTALLLPYNHIKELPPDLVNM
RSLQKIDLMHNDLTSLPEDMGLLRKLDCLYLQHNDILELPEFEGNEALNE
LHASNNFIKIIPKAMCSNLPHLKILDLRDNKITELPDELCLLRNLNRLDV
SNNTISVLPVTLSSLAHLISLQVEGNPIKTIRRDILQCGTTRILKTLHDR
AVAKAKEEGGGVDDASTSAGISVTRLRGGQMDDGDIPGNFPDRYKLRHTR
TLAVNLEELTSVPDQVFQIARDEGVHVVDFARNQLSTLPNGLQHMKDLVT
ELVLSNNVIGYVPQFISQFTRISFLNLSNNLLNDLPTEFGVLNTLRELNI
ANNRFPCIPNCVYELQGLEILIASENHIKMLNVSGLQNMRRLSTLDLRNN
DIETVPPILGNLTNITHLELVGNPFRQPRHQILMKGTDAIMSYLRDRIPT
*

BS03404.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:28:27
Subject Length Description Subject Range Query Range Score Percent Strand
f-cup-PB 650 CG9611-PB 1..650 1..650 3344 100 Plus
f-cup-PA 693 CG9611-PA 44..693 1..650 3344 100 Plus
f-cup-PE 620 CG9611-PE 49..620 79..650 2938 99.8 Plus
f-cup-PG 759 CG9611-PG 1..639 1..623 2300 75.3 Plus
f-cup-PF 802 CG9611-PF 44..682 1..623 2300 75.3 Plus
f-cup-PG 759 CG9611-PG 553..759 444..650 1061 100 Plus
f-cup-PG 759 CG9611-PG 49..400 260..647 204 25.7 Plus
f-cup-PG 759 CG9611-PG 549..756 175..400 187 28.6 Plus