Clone Sequence Records
BS03422.3prime Sequence
803 bp (692 high quality bases) assembled on 2005-11-30
> BS03422.3prime
ATGGTCTAGAAAGCTTTCAGCATCTGACAAAAAAGCGCTGCTTATGCAGG
TGTAGTTGCTGCTGCTTCCGGCGATAATCCGGCACATTGCGGAGCATGAA
AACGGCTGCGAAGAGAACGTAGAGCGACGACAGCATGAGGAGTACGGGAA
AGGAGAAGACGATGTGCGCCATTCGGACCTTCCGCTGCGCTGTTGGAGGC
GAATAGATGTAGTCACCATTCCAGCTCTTGTAGGCGCACCGCTCTCCATC
GTAGTCGTTAACGCAGAGGCAGGAATGGAAGACTGTGTTGTTCACCATCG
GATGCTGGAAGCAGTGGCCGCCGTTCAGGCAAAAGCTAGTATTGTAAGCT
TCGCTGCAGGGCAGCATCTGAATCTCTGTCTCCTTGTCGTTCGGGCTGGG
AGTCGTGGAGTCAGGCGTGCTGGACGAACTGGGGTCAGGTGGCGGTTCTC
CGGTGTGGGTAACAGTTTCGGGTGTTGTCACTGTCTCGGAATCAGTGATT
GGTGTGCTGCTTTCGCTGGCCAACCAGGTGTCGGTACTGGATCCGAGAAT
TATCCCATCCTGTTCCGGATCCGCAGCAATGGAGTCGTCTGCGTTTGGCA
GTTGGCCGCCCGAGTCCGGATTGGGATCCGTATCGGGATGCAGCTGGTCT
GCCTCCTCCTGGGCCGAGGCCTCCAGTTGCTTGCGCTGCAGCTCCAGGCG
ATTGAGCAACTCAACCGCGGTCTCCTGGATCTGCTGCTGCAGCTCGTGCG
CATGCTCGTGCATGTGGTTGTGCTGATGCTGCACAATTTTCAGCGTATGC
TCT
BS03422.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:31:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17610-PA | 888 | grk-RA | 102..888 | 803..17 | 3910 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:03:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| grk-RA | 1718 | CG17610-RA | 476..1262 | 803..17 | 3920 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:03:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8431875..8432463 | 215..803 | 2930 | 99.8 | Plus |
| 2L | 23513712 | 2L | 8431542..8431742 | 17..217 | 1005 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 00:03:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2419 | 782..732 | 111 | 68.6 | Minus |
BS03422.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:25:16 Download gff for
BS03422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17610-PA | 102..888 | 17..803 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:39:38 Download gff for
BS03422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17610-PA | 102..888 | 17..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:01:16 Download gff for
BS03422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grk-RA | 476..1270 | 5..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:28 Download gff for
BS03422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grk-RA | 476..1270 | 5..803 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:28 Download gff for
BS03422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8431534..8431741 | 5..216 | 97 | <- | Plus |
| 2L | 8431877..8432463 | 217..803 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:01:16 Download gff for
BS03422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8431534..8431741 | 5..216 | 97 | <- | Plus |
| arm_2L | 8431877..8432463 | 217..803 | 99 | | Plus |
BS03422.5prime Sequence
839 bp (702 high quality bases) assembled on 2005-11-30
> BS03422.5prime
GAAGTTATCAGTCGACATGATGCAAATCCCATTTACTCGGATTTTCAAAG
TAATTTTCGTGCTCTCAACAATTGTCGCCGTCACAGATTGTTGTTCGAGC
CGAATCTTACTTCTCCGAGAGCATACGCTGAAAATTGTGCAGCATCAGCA
CAGCCACATGCACGAGCATGCGCACGAGCTGCAGCAGCAGATCCAGGAGA
CCGCGGTTGAGTTGCTCAATCGCCTGGAGCTGCAGCGCAAGCAACTGGAG
GCCTCGGCCCAGGAGGAGGCAGACCAGCTGCATCCCGATACGGATCCCAA
TCCGGACTCGGGCGGCCAACTGCCAAACGCAGACGACTCCATTGCTGCGG
ATCCGGAACAGGATGGGATAATTCTCGGATCCAGTACCGACACCTGGTTG
GCCAGCGAAAGCAGCACACCAATCACTGATTCCGAGACAGTGACAACACC
CGAAACTGTTACCCACACCGGAGAACCGCCACCTGACCCCAGTTCGTCCA
GCACGCCTGACTCCACGACTCCCAGCCCGAACGACAAGGAGACAGAGATT
CAGATGCTGCCCTGCAGCGAAGCTTACAATACTAGCTTTTGCCTGAACGG
CGGCCACTGCTTCCAGCATCCGATGGTGAACAACACAGTCTTCCATTCCT
GCCTCTGCGTTAACGACTACGATGGAGAGCGGTGCGCCTACAAGAGCTGG
AATGGTGACTACATCTATTCGCCTCCAACAGCGCAGCGGAAGGTCCGAAT
GGCGCACATCGTCTTCTCCTTTCCCGTACTCCTCATGCTGTCGTCGCTCT
ACGTTCTCTTCGCAGCCGTTTTCATGCTCCGCAATGTGC
BS03422.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:31:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17610-PA | 888 | grk-RA | 1..823 | 17..839 | 4115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:40:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| grk-RA | 1718 | CG17610-RA | 375..1197 | 17..839 | 4115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:40:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8431875..8432497 | 706..84 | 3115 | 100 | Minus |
| 2L | 23513712 | 2L | 8431607..8431742 | 839..704 | 680 | 100 | Minus |
| 2L | 23513712 | 2L | 8433013..8433082 | 86..17 | 350 | 100 | Minus |
Blast to na_te.dros performed 2015-02-02 11:40:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2419 | 139..189 | 119 | 75 | Plus |
BS03422.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:25:17 Download gff for
BS03422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17610-PA | 1..823 | 17..839 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:39:40 Download gff for
BS03422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17610-PA | 1..823 | 17..839 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:52:34 Download gff for
BS03422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grk-RA | 371..1197 | 12..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:35:14 Download gff for
BS03422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grk-RA | 371..1197 | 12..839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:35:14 Download gff for
BS03422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8431607..8431741 | 705..839 | 100 | <- | Minus |
| 2L | 8431877..8432494 | 87..704 | 100 | <- | Minus |
| 2L | 8433013..8433086 | 12..86 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:52:34 Download gff for
BS03422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8431607..8431741 | 705..839 | 100 | <- | Minus |
| arm_2L | 8431877..8432494 | 87..704 | 100 | <- | Minus |
| arm_2L | 8433013..8433086 | 12..86 | 97 | | Minus |
BS03422.complete Sequence
920 bp (920 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634720
> BS03422.complete
GAAGTTATCAGTCGACATGATGCAAATCCCATTTACTCGGATTTTCAAAG
TAATTTTCGTGCTCTCAACAATTGTCGCCGTCACAGATTGTTGTTCGAGC
CGAATCTTACTTCTCCGAGAGCATACGCTGAAAATTGTGCAGCATCAGCA
CAGCCACATGCACGAGCATGCGCACGAGCTGCAGCAGCAGATCCAGGAGA
CCGCGGTTGAGTTGCTCAATCGCCTGGAGCTGCAGCGCAAGCAACTGGAG
GCCTCGGCCCAGGAGGAGGCAGACCAGCTGCATCCCGATACGGATCCCAA
TCCGGACTCGGGCGGCCAACTGCCAAACGCAGACGACTCCATTGCTGCGG
ATCCGGAACAGGATGGGATAATTCTCGGATCCAGTACCGACACCTGGTTG
GCCAGCGAAAGCAGCACACCAATCACTGATTCCGAGACAGTGACAACACC
CGAAACTGTTACCCACACCGGAGAACCGCCACCTGACCCCAGTTCGTCCA
GCACGCCTGACTCCACGACTCCCAGCCCGAACGACAAGGAGACAGAGATT
CAGATGCTGCCCTGCAGCGAAGCTTACAATACTAGCTTTTGCCTGAACGG
CGGCCACTGCTTCCAGCATCCGATGGTGAACAACACAGTCTTCCATTCCT
GCCTCTGCGTTAACGACTACGATGGAGAGCGGTGCGCCTACAAGAGCTGG
AATGGTGACTACATCTATTCGCCTCCAACAGCGCAGCGGAAGGTCCGAAT
GGCGCACATCGTCTTCTCCTTTCCCGTACTCCTCATGCTGTCGTCGCTCT
ACGTTCTCTTCGCAGCCGTTTTCATGCTCCGCAATGTGCCGGATTATCGC
CGGAAGCAGCAGCAACTACACCTGCATAAGCAGCGCTTTTTTGTCAGATG
CTGAAAGCTTTCTAGACCAT
BS03422.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:49:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| grk-RA | 888 | CG17610-PA | 1..888 | 17..904 | 4440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:49:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| grk-RA | 1718 | CG17610-RA | 375..1262 | 17..904 | 4440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:49:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8431875..8432497 | 706..84 | 3115 | 100 | Minus |
| 2L | 23513712 | 2L | 8431542..8431742 | 904..704 | 1005 | 100 | Minus |
| 2L | 23513712 | 2L | 8433013..8433082 | 86..17 | 350 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:49:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2419 | 139..189 | 119 | 75 | Plus |
BS03422.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:39 Download gff for
BS03422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grk-RA | 1..888 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:18:07 Download gff for
BS03422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grk-RA | 371..1270 | 12..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:50 Download gff for
BS03422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grk-RA | 375..1261 | 17..903 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:39 Download gff for
BS03422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grk-RA | 371..1270 | 12..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:36 Download gff for
BS03422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grk-RA | 375..1261 | 17..903 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:36 Download gff for
BS03422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8431543..8431741 | 705..903 | 100 | <- | Minus |
| 2L | 8431877..8432494 | 87..704 | 100 | <- | Minus |
| 2L | 8433013..8433082 | 17..86 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:50 Download gff for
BS03422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8431543..8431741 | 705..903 | 100 | <- | Minus |
| arm_2L | 8431877..8432494 | 87..704 | 100 | <- | Minus |
| arm_2L | 8433013..8433082 | 17..86 | 100 | | Minus |
BS03422.pep Sequence
Translation from 16 to 903
> BS03422.pep
MMQIPFTRIFKVIFVLSTIVAVTDCCSSRILLLREHTLKIVQHQHSHMHE
HAHELQQQIQETAVELLNRLELQRKQLEASAQEEADQLHPDTDPNPDSGG
QLPNADDSIAADPEQDGIILGSSTDTWLASESSTPITDSETVTTPETVTH
TGEPPPDPSSSSTPDSTTPSPNDKETEIQMLPCSEAYNTSFCLNGGHCFQ
HPMVNNTVFHSCLCVNDYDGERCAYKSWNGDYIYSPPTAQRKVRMAHIVF
SFPVLLMLSSLYVLFAAVFMLRNVPDYRRKQQQLHLHKQRFFVRC*
BS03422.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| grk-PA | 295 | CG17610-PA | 1..295 | 1..295 | 1573 | 100 | Plus |
