Clone Sequence Records
BS03602.3prime Sequence
870 bp (763 high quality bases) assembled on 2005-12-01
> BS03602.3prime
ATGGTCTAGAAAGCTTCTAGTAGTACTTCCAGGAGTCGGCCGACTCCTGA
TTCTGCTTCTGCTTGCTCTTGCGCTCAATCAAACCTGCCAAATGCTCCGA
CCGCATGGACAGCGAGTCGATCTTCTCCACCAGCTGCTGATAGGGACTCA
AGGGCTGGGTGCCCATCACCACATGACCCAGTTTCGAATCGATCTTGGCA
TTCAGACGGGCATTGCGGATAAGGTTGACGATCCAGCACTCAGCCTCGTT
GGGCTTCATGTTCAGCTTATCGGCCAGCATGCTGATGGTGATGCACTGGT
GGATGCGGCAGAATGTCTCGAAGATCATCAAGCGGGCATCCTCCACGAAC
TCATTCAGGCAGGCCACGATGAAGAAGTCGTTGAGGATCACCGTCTGGCA
CTCGTGCAGCTTCAGACGCGCTCCCTCGAAATCAAAGTTCACGTACAGAC
ACTCCAGAAACTCGGTGATGGGATCGCGGTACGTGTACGACTCCTGTTGG
ATCACCTTGATCAAATCCTTTAGAGCATTGCGGCGGGTGCGGTTGATGAC
TACGGCGGTGGCCAAGTAACGCATGATGTGCGGACACATTGTCTGAATGG
CGTTCAAATACAGGGGCTTGTACAGGAACATCTCAATAATGAGATCGCGT
CCCTTGGGGTGATTGAAGAAGACCAGGACCGACCAGTGGATCAGCCAGGT
GCGTTGCTGCAGGGCCTGGATGGTGCTGAAGTTGGCGTTGTCAATGTAGT
CGCGCAAACGCGTCAGATCCTCCAGAGCAGTGTTCCAGTTGAGGGTCAGA
ATCTCGGCGGCCAGCTTGCCCCACAGCACATTAAGGTAGTTCTTGTCGTT
GGGCGACATGACGATGAGGC
BS03602.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9677-PA | 1308 | Int6-RA | 455..1308 | 870..17 | 4270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:53:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Int6-RA | 1520 | CG9677-RA | 563..1416 | 870..17 | 4270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:53:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16785346..16786172 | 17..843 | 4135 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 13:53:28 has no hits.
BS03602.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:02 Download gff for
BS03602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Int6-PA | 455..1308 | 17..870 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:43:11 Download gff for
BS03602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9677-PA | 455..1308 | 17..870 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:04:53 Download gff for
BS03602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Int6-RA | 563..1425 | 8..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:53:04 Download gff for
BS03602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Int6-RA | 563..1425 | 8..870 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:53:04 Download gff for
BS03602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16785337..16786170 | 8..841 | 99 | <- | Plus |
3L | 16786257..16786285 | 842..870 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:04:53 Download gff for
BS03602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16778437..16779270 | 8..841 | 99 | <- | Plus |
arm_3L | 16779357..16779385 | 842..870 | 100 | | Plus |
BS03602.5prime Sequence
914 bp (745 high quality bases) assembled on 2005-12-01
> BS03602.5prime
GAAGTTATCAGTCGACATGGCCAATTTCGATCTGACACGCATCAATTGCC
AGTTTTTGGACAGGCATTTGACCTTCCCGCTGCTGGAGTTCTTGTGCGGC
AAGGAGATCTACAACCAGCAGGAGCTGCTGGAGTACATTTTGGAGACGGT
GAACAAGACGAACATGATCGATTACACGATGGACACCCGCAAGCGTCTCA
ATCTCAGCCAGGAGATGCCCGAGGAGCTCGTGCAGCGCAAGGCGGAGGTC
CTGGCCACGCTTAAGCAGCTGCAGAACGAGGTGGCACCCATCATGAAGGC
CACCGACATTCTTAAGAACGGTGAGAGCATGAAGGACTCGAAGACCTTCG
TCAACGCCCTTCAGAAGGACTACAATTTTAAGGTGGAGCACCTGGAGAGC
GCCTACAAGCTGGCCAAGTACCTCTACGAGTGCGGCAACTATCAGGAGTC
CACCTCTTACCTGTACTTCTGCCTCATCGTCATGTCGCCCAACGACAAGA
ACTACCTTAATGTGCTGTGGGGCAAGCTGGCCGCCGAGATTCTGACCCTC
AACTGGAACACTGCTCTGGAGGATCTGACGCGTTTGCGCGACTACATTGA
CAACGCCAACTTCAGCACCATCCAGGCCCTGCAGCAACGCACCTGGCTGA
TCCACTGGTCGGTCCTGGTCTTCTTCAATCACCCCAAGGGACGCGATCTC
ATTATTGAGATGTTCCTGTACAAGCCCCTGTATTTGAACGCCATTCAGAC
AATGTGTCCGCACATCATGCGTTACTTGGCCACCGCCGTAGTCATCAACC
GCACCCGCCGCAATGCTCTAAAGGATTTGATCAAGGTGATCCAACAGGAG
TCGTACACGTACCGCGATCCCATCACCGAGTTTCTGGAGTGTCTGTACGT
GAACTTTGATTTCG
BS03602.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9677-PA | 1308 | Int6-RA | 1..898 | 17..914 | 4490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:30:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Int6-RA | 1520 | CG9677-RA | 108..1006 | 16..914 | 4495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:29:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16785756..16786172 | 914..498 | 2085 | 100 | Minus |
3L | 28110227 | 3L | 16786257..16786651 | 499..105 | 1975 | 100 | Minus |
3L | 28110227 | 3L | 16786744..16786834 | 106..16 | 455 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 05:29:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dnet\R1B | 2038 | Dnet\R1B NETR1B 2038bp | 7..48 | 220..179 | 111 | 73.8 | Minus |
BS03602.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:03 Download gff for
BS03602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Int6-PA | 1..898 | 17..914 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:43:12 Download gff for
BS03602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9677-PA | 1..898 | 17..914 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:33:11 Download gff for
BS03602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Int6-RA | 108..1006 | 16..914 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:34:11 Download gff for
BS03602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Int6-RA | 108..1006 | 16..914 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:34:11 Download gff for
BS03602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16785756..16786170 | 500..914 | 100 | <- | Minus |
3L | 16786257..16786649 | 107..499 | 100 | <- | Minus |
3L | 16786744..16786834 | 16..106 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:33:11 Download gff for
BS03602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16778856..16779270 | 500..914 | 100 | <- | Minus |
arm_3L | 16779357..16779749 | 107..499 | 100 | <- | Minus |
arm_3L | 16779844..16779934 | 16..106 | 100 | | Minus |
BS03602.complete Sequence
1340 bp (1340 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634721
> BS03602.complete
GAAGTTATCAGTCGACATGGCCAATTTCGATCTGACACGCATCAATTGCC
AGTTTTTGGACAGGCATTTGACCTTCCCGCTGCTGGAGTTCTTGTGCGGC
AAGGAGATCTACAACCAGCAGGAGCTGCTGGAGTACATTTTGGAGACGGT
GAACAAGACGAACATGATCGATTACACGATGGACACCCGCAAGCGTCTCA
ATCTCAGCCAGGAGATGCCCGAGGAGCTCGTGCAGCGCAAGGCGGAGGTC
CTGGCCACGCTTAAGCAGCTGCAGAACGAGGTGGCACCCATCATGAAGGC
CACCGACATTCTTAAGAACGGTGAGAGCATGAAGGACTCGAAGACCTTCG
TCAACGCCCTTCAGAAGGACTACAATTTTAAGGTGGAGCACCTGGAGAGC
GCCTACAAGCTGGCCAAGTACCTCTACGAGTGCGGCAACTATCAGGAGTC
CACCTCTTACCTGTACTTCTGCCTCATCGTCATGTCGCCCAACGACAAGA
ACTACCTTAATGTGCTGTGGGGCAAGCTGGCCGCCGAGATTCTGACCCTC
AACTGGAACACTGCTCTGGAGGATCTGACGCGTTTGCGCGACTACATTGA
CAACGCCAACTTCAGCACCATCCAGGCCCTGCAGCAACGCACCTGGCTGA
TCCACTGGTCGGTCCTGGTCTTCTTCAATCACCCCAAGGGACGCGATCTC
ATTATTGAGATGTTCCTGTACAAGCCCCTGTATTTGAACGCCATTCAGAC
AATGTGTCCGCACATCATGCGTTACTTGGCCACCGCCGTAGTCATCAACC
GCACCCGCCGCAATGCTCTAAAGGATTTGATCAAGGTGATCCAACAGGAG
TCGTACACGTACCGCGATCCCATCACCGAGTTTCTGGAGTGTCTGTACGT
GAACTTTGATTTCGAGGGAGCGCGTCTGAAGCTGCACGAGTGCCAGACGG
TGATCCTCAACGACTTCTTCATCGTGGCCTGCCTGAATGAGTTCGTGGAG
GATGCCCGCTTGATGATCTTCGAGACATTCTGCCGCATCCACCAGTGCAT
CACCATCAGCATGCTGGCCGATAAGCTGAACATGAAGCCCAACGAGGCTG
AGTGCTGGATCGTCAACCTTATCCGCAATGCCCGTCTGAATGCCAAGATC
GATTCGAAACTGGGTCATGTGGTGATGGGCACCCAGCCCTTGAGTCCCTA
TCAGCAGCTGGTGGAGAAGATCGACTCGCTGTCCATGCGGTCGGAGCATT
TGGCAGGTTTGATTGAGCGCAAGAGCAAGCAGAAGCAGAATCAGGAGTCG
GCCGACTCCTGGAAGTACTACTAGAAGCTTTCTAGACCAT
BS03602.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:06:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Int6-RA | 1308 | CG9677-PA | 1..1308 | 17..1324 | 6540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:06:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Int6-RA | 1520 | CG9677-RA | 108..1416 | 16..1324 | 6545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:06:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16785346..16786172 | 1324..498 | 4135 | 100 | Minus |
3L | 28110227 | 3L | 16786257..16786651 | 499..105 | 1975 | 100 | Minus |
3L | 28110227 | 3L | 16786744..16786834 | 106..16 | 455 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:06:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dnet\R1B | 2038 | Dnet\R1B NETR1B 2038bp | 7..48 | 220..179 | 111 | 73.8 | Minus |
BS03602.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:29:02 Download gff for
BS03602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Int6-RA | 1..1308 | 17..1324 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:12:18 Download gff for
BS03602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Int6-RA | 156..1473 | 16..1333 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:39 Download gff for
BS03602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Int6-RA | 109..1416 | 17..1324 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:29:03 Download gff for
BS03602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Int6-RA | 156..1473 | 16..1333 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:33 Download gff for
BS03602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Int6-RA | 109..1416 | 17..1324 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:33 Download gff for
BS03602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16785346..16786170 | 500..1324 | 100 | <- | Minus |
3L | 16786257..16786649 | 107..499 | 100 | <- | Minus |
3L | 16786744..16786833 | 17..106 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:39 Download gff for
BS03602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16778446..16779270 | 500..1324 | 100 | <- | Minus |
arm_3L | 16779357..16779749 | 107..499 | 100 | <- | Minus |
arm_3L | 16779844..16779933 | 17..106 | 100 | | Minus |
BS03602.pep Sequence
Translation from 16 to 1323
> BS03602.pep
MANFDLTRINCQFLDRHLTFPLLEFLCGKEIYNQQELLEYILETVNKTNM
IDYTMDTRKRLNLSQEMPEELVQRKAEVLATLKQLQNEVAPIMKATDILK
NGESMKDSKTFVNALQKDYNFKVEHLESAYKLAKYLYECGNYQESTSYLY
FCLIVMSPNDKNYLNVLWGKLAAEILTLNWNTALEDLTRLRDYIDNANFS
TIQALQQRTWLIHWSVLVFFNHPKGRDLIIEMFLYKPLYLNAIQTMCPHI
MRYLATAVVINRTRRNALKDLIKVIQQESYTYRDPITEFLECLYVNFDFE
GARLKLHECQTVILNDFFIVACLNEFVEDARLMIFETFCRIHQCITISML
ADKLNMKPNEAECWIVNLIRNARLNAKIDSKLGHVVMGTQPLSPYQQLVE
KIDSLSMRSEHLAGLIERKSKQKQNQESADSWKYY*
BS03602.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Int6-PA | 435 | CG9677-PA | 1..435 | 1..435 | 2273 | 100 | Plus |