Clone BS03602 Report

Search the DGRC for BS03602

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:36
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptInt6-RA
Protein status:BS03602.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03602.3prime Sequence

870 bp (763 high quality bases) assembled on 2005-12-01

> BS03602.3prime
ATGGTCTAGAAAGCTTCTAGTAGTACTTCCAGGAGTCGGCCGACTCCTGA
TTCTGCTTCTGCTTGCTCTTGCGCTCAATCAAACCTGCCAAATGCTCCGA
CCGCATGGACAGCGAGTCGATCTTCTCCACCAGCTGCTGATAGGGACTCA
AGGGCTGGGTGCCCATCACCACATGACCCAGTTTCGAATCGATCTTGGCA
TTCAGACGGGCATTGCGGATAAGGTTGACGATCCAGCACTCAGCCTCGTT
GGGCTTCATGTTCAGCTTATCGGCCAGCATGCTGATGGTGATGCACTGGT
GGATGCGGCAGAATGTCTCGAAGATCATCAAGCGGGCATCCTCCACGAAC
TCATTCAGGCAGGCCACGATGAAGAAGTCGTTGAGGATCACCGTCTGGCA
CTCGTGCAGCTTCAGACGCGCTCCCTCGAAATCAAAGTTCACGTACAGAC
ACTCCAGAAACTCGGTGATGGGATCGCGGTACGTGTACGACTCCTGTTGG
ATCACCTTGATCAAATCCTTTAGAGCATTGCGGCGGGTGCGGTTGATGAC
TACGGCGGTGGCCAAGTAACGCATGATGTGCGGACACATTGTCTGAATGG
CGTTCAAATACAGGGGCTTGTACAGGAACATCTCAATAATGAGATCGCGT
CCCTTGGGGTGATTGAAGAAGACCAGGACCGACCAGTGGATCAGCCAGGT
GCGTTGCTGCAGGGCCTGGATGGTGCTGAAGTTGGCGTTGTCAATGTAGT
CGCGCAAACGCGTCAGATCCTCCAGAGCAGTGTTCCAGTTGAGGGTCAGA
ATCTCGGCGGCCAGCTTGCCCCACAGCACATTAAGGTAGTTCTTGTCGTT
GGGCGACATGACGATGAGGC

BS03602.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG9677-PA 1308 Int6-RA 455..1308 870..17 4270 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
Int6-RA 1520 CG9677-RA 563..1416 870..17 4270 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16785346..16786172 17..843 4135 100 Plus
Blast to na_te.dros performed on 2015-02-03 13:53:28 has no hits.

BS03602.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:02 Download gff for BS03602.3prime
Subject Subject Range Query Range Percent Splice Strand
Int6-PA 455..1308 17..870 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:43:11 Download gff for BS03602.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9677-PA 455..1308 17..870 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:04:53 Download gff for BS03602.3prime
Subject Subject Range Query Range Percent Splice Strand
Int6-RA 563..1425 8..870 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:53:04 Download gff for BS03602.3prime
Subject Subject Range Query Range Percent Splice Strand
Int6-RA 563..1425 8..870 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:53:04 Download gff for BS03602.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16785337..16786170 8..841 99 <- Plus
3L 16786257..16786285 842..870 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:04:53 Download gff for BS03602.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16778437..16779270 8..841 99 <- Plus
arm_3L 16779357..16779385 842..870 100   Plus

BS03602.5prime Sequence

914 bp (745 high quality bases) assembled on 2005-12-01

> BS03602.5prime
GAAGTTATCAGTCGACATGGCCAATTTCGATCTGACACGCATCAATTGCC
AGTTTTTGGACAGGCATTTGACCTTCCCGCTGCTGGAGTTCTTGTGCGGC
AAGGAGATCTACAACCAGCAGGAGCTGCTGGAGTACATTTTGGAGACGGT
GAACAAGACGAACATGATCGATTACACGATGGACACCCGCAAGCGTCTCA
ATCTCAGCCAGGAGATGCCCGAGGAGCTCGTGCAGCGCAAGGCGGAGGTC
CTGGCCACGCTTAAGCAGCTGCAGAACGAGGTGGCACCCATCATGAAGGC
CACCGACATTCTTAAGAACGGTGAGAGCATGAAGGACTCGAAGACCTTCG
TCAACGCCCTTCAGAAGGACTACAATTTTAAGGTGGAGCACCTGGAGAGC
GCCTACAAGCTGGCCAAGTACCTCTACGAGTGCGGCAACTATCAGGAGTC
CACCTCTTACCTGTACTTCTGCCTCATCGTCATGTCGCCCAACGACAAGA
ACTACCTTAATGTGCTGTGGGGCAAGCTGGCCGCCGAGATTCTGACCCTC
AACTGGAACACTGCTCTGGAGGATCTGACGCGTTTGCGCGACTACATTGA
CAACGCCAACTTCAGCACCATCCAGGCCCTGCAGCAACGCACCTGGCTGA
TCCACTGGTCGGTCCTGGTCTTCTTCAATCACCCCAAGGGACGCGATCTC
ATTATTGAGATGTTCCTGTACAAGCCCCTGTATTTGAACGCCATTCAGAC
AATGTGTCCGCACATCATGCGTTACTTGGCCACCGCCGTAGTCATCAACC
GCACCCGCCGCAATGCTCTAAAGGATTTGATCAAGGTGATCCAACAGGAG
TCGTACACGTACCGCGATCCCATCACCGAGTTTCTGGAGTGTCTGTACGT
GAACTTTGATTTCG

BS03602.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG9677-PA 1308 Int6-RA 1..898 17..914 4490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:30:00
Subject Length Description Subject Range Query Range Score Percent Strand
Int6-RA 1520 CG9677-RA 108..1006 16..914 4495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:29:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16785756..16786172 914..498 2085 100 Minus
3L 28110227 3L 16786257..16786651 499..105 1975 100 Minus
3L 28110227 3L 16786744..16786834 106..16 455 100 Minus
Blast to na_te.dros performed 2015-02-12 05:29:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dnet\R1B 2038 Dnet\R1B NETR1B 2038bp 7..48 220..179 111 73.8 Minus

BS03602.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:03 Download gff for BS03602.5prime
Subject Subject Range Query Range Percent Splice Strand
Int6-PA 1..898 17..914 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:43:12 Download gff for BS03602.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9677-PA 1..898 17..914 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:33:11 Download gff for BS03602.5prime
Subject Subject Range Query Range Percent Splice Strand
Int6-RA 108..1006 16..914 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:34:11 Download gff for BS03602.5prime
Subject Subject Range Query Range Percent Splice Strand
Int6-RA 108..1006 16..914 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:34:11 Download gff for BS03602.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16785756..16786170 500..914 100 <- Minus
3L 16786257..16786649 107..499 100 <- Minus
3L 16786744..16786834 16..106 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:33:11 Download gff for BS03602.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16778856..16779270 500..914 100 <- Minus
arm_3L 16779357..16779749 107..499 100 <- Minus
arm_3L 16779844..16779934 16..106 100   Minus

BS03602.complete Sequence

1340 bp (1340 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634721

> BS03602.complete
GAAGTTATCAGTCGACATGGCCAATTTCGATCTGACACGCATCAATTGCC
AGTTTTTGGACAGGCATTTGACCTTCCCGCTGCTGGAGTTCTTGTGCGGC
AAGGAGATCTACAACCAGCAGGAGCTGCTGGAGTACATTTTGGAGACGGT
GAACAAGACGAACATGATCGATTACACGATGGACACCCGCAAGCGTCTCA
ATCTCAGCCAGGAGATGCCCGAGGAGCTCGTGCAGCGCAAGGCGGAGGTC
CTGGCCACGCTTAAGCAGCTGCAGAACGAGGTGGCACCCATCATGAAGGC
CACCGACATTCTTAAGAACGGTGAGAGCATGAAGGACTCGAAGACCTTCG
TCAACGCCCTTCAGAAGGACTACAATTTTAAGGTGGAGCACCTGGAGAGC
GCCTACAAGCTGGCCAAGTACCTCTACGAGTGCGGCAACTATCAGGAGTC
CACCTCTTACCTGTACTTCTGCCTCATCGTCATGTCGCCCAACGACAAGA
ACTACCTTAATGTGCTGTGGGGCAAGCTGGCCGCCGAGATTCTGACCCTC
AACTGGAACACTGCTCTGGAGGATCTGACGCGTTTGCGCGACTACATTGA
CAACGCCAACTTCAGCACCATCCAGGCCCTGCAGCAACGCACCTGGCTGA
TCCACTGGTCGGTCCTGGTCTTCTTCAATCACCCCAAGGGACGCGATCTC
ATTATTGAGATGTTCCTGTACAAGCCCCTGTATTTGAACGCCATTCAGAC
AATGTGTCCGCACATCATGCGTTACTTGGCCACCGCCGTAGTCATCAACC
GCACCCGCCGCAATGCTCTAAAGGATTTGATCAAGGTGATCCAACAGGAG
TCGTACACGTACCGCGATCCCATCACCGAGTTTCTGGAGTGTCTGTACGT
GAACTTTGATTTCGAGGGAGCGCGTCTGAAGCTGCACGAGTGCCAGACGG
TGATCCTCAACGACTTCTTCATCGTGGCCTGCCTGAATGAGTTCGTGGAG
GATGCCCGCTTGATGATCTTCGAGACATTCTGCCGCATCCACCAGTGCAT
CACCATCAGCATGCTGGCCGATAAGCTGAACATGAAGCCCAACGAGGCTG
AGTGCTGGATCGTCAACCTTATCCGCAATGCCCGTCTGAATGCCAAGATC
GATTCGAAACTGGGTCATGTGGTGATGGGCACCCAGCCCTTGAGTCCCTA
TCAGCAGCTGGTGGAGAAGATCGACTCGCTGTCCATGCGGTCGGAGCATT
TGGCAGGTTTGATTGAGCGCAAGAGCAAGCAGAAGCAGAATCAGGAGTCG
GCCGACTCCTGGAAGTACTACTAGAAGCTTTCTAGACCAT

BS03602.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
Int6-RA 1308 CG9677-PA 1..1308 17..1324 6540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
Int6-RA 1520 CG9677-RA 108..1416 16..1324 6545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16785346..16786172 1324..498 4135 100 Minus
3L 28110227 3L 16786257..16786651 499..105 1975 100 Minus
3L 28110227 3L 16786744..16786834 106..16 455 100 Minus
Blast to na_te.dros performed 2014-11-28 00:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dnet\R1B 2038 Dnet\R1B NETR1B 2038bp 7..48 220..179 111 73.8 Minus

BS03602.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:29:02 Download gff for BS03602.complete
Subject Subject Range Query Range Percent Splice Strand
Int6-RA 1..1308 17..1324 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:12:18 Download gff for BS03602.complete
Subject Subject Range Query Range Percent Splice Strand
Int6-RA 156..1473 16..1333 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:39 Download gff for BS03602.complete
Subject Subject Range Query Range Percent Splice Strand
Int6-RA 109..1416 17..1324 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:29:03 Download gff for BS03602.complete
Subject Subject Range Query Range Percent Splice Strand
Int6-RA 156..1473 16..1333 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:33 Download gff for BS03602.complete
Subject Subject Range Query Range Percent Splice Strand
Int6-RA 109..1416 17..1324 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:33 Download gff for BS03602.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16785346..16786170 500..1324 100 <- Minus
3L 16786257..16786649 107..499 100 <- Minus
3L 16786744..16786833 17..106 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:39 Download gff for BS03602.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16778446..16779270 500..1324 100 <- Minus
arm_3L 16779357..16779749 107..499 100 <- Minus
arm_3L 16779844..16779933 17..106 100   Minus

BS03602.pep Sequence

Translation from 16 to 1323

> BS03602.pep
MANFDLTRINCQFLDRHLTFPLLEFLCGKEIYNQQELLEYILETVNKTNM
IDYTMDTRKRLNLSQEMPEELVQRKAEVLATLKQLQNEVAPIMKATDILK
NGESMKDSKTFVNALQKDYNFKVEHLESAYKLAKYLYECGNYQESTSYLY
FCLIVMSPNDKNYLNVLWGKLAAEILTLNWNTALEDLTRLRDYIDNANFS
TIQALQQRTWLIHWSVLVFFNHPKGRDLIIEMFLYKPLYLNAIQTMCPHI
MRYLATAVVINRTRRNALKDLIKVIQQESYTYRDPITEFLECLYVNFDFE
GARLKLHECQTVILNDFFIVACLNEFVEDARLMIFETFCRIHQCITISML
ADKLNMKPNEAECWIVNLIRNARLNAKIDSKLGHVVMGTQPLSPYQQLVE
KIDSLSMRSEHLAGLIERKSKQKQNQESADSWKYY*

BS03602.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
Int6-PA 435 CG9677-PA 1..435 1..435 2273 100 Plus