Clone BS03603 Report

Search the DGRC for BS03603

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:36
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptOstStt3-RA
Protein status:BS03603.pep: full length peptide match
Sequenced Size:2357

Clone Sequence Records

BS03603.complete Sequence

2357 bp assembled on 2009-12-07

GenBank Submission: KX795848

> BS03603.complete
GAAGTTATCAGTCGACATGAATCGGACGCCGAAGATGCTGAACAGCAAGG
TGGCTGGCTACAGCAGCCTAATCACCTTCGCCATCCTGCTAATCGCCTGG
CTGGCCGGATTTTCCTCTCGCCTCTTCGCCGTCATCCGTTTCGAGTCGAT
TATCCATGAGTTTGATCCGTGGTTCAACTACCGGGCCACCGCCTACATGG
TGCAGAATGGTTGGTACAACTTCCTCAACTGGTTCGACGAGCGCGCATGG
TATCCGCTCGGCAGGATTGTGGGCGGTACCGTCTATCCCGGCCTGATGAT
TACGTCCGGCGGAATCCATTGGCTGCTGCACGTACTCAACATACCGGTCC
ATATTCGTGACATCTGCGTGTTCCTGGCGCCGATCTTCAGTGGCCTGACC
TCCATCTCCACCTACCTGCTGACCAAGGAGCTGTGGTCCGCGGGCGCCGG
CCTCTTCGCCGCCAGCTTCATCGCCATCGTGCCTGGCTACATCAGTAGGT
CGGTGGCTGGATCGTACGATAACGAGGGCATTGCCATATTCGCCCTGCAG
TTCACCTACTTCCTGTGGGTGCGCTCAGTGAAGACTGGATCCGTGTTCTG
GTCGGCCGCAGCCGCTTTGTCCTACTTCTACATGGTGTCCGCCTGGGGTG
GCTACGTGTTCATCATCAACCTGATACCCCTGCACGTCTTCGTACTGCTC
ATTATGGGCAGGTACTCGCCGCGTCTGCTGACCAGCTACAGCACCTTCTA
CATCCTGGGACTGCTGTTCTCCATGCAGATCCCCTTCGTGGGATTCCAAC
CGATACGCACCAGTGAACACATGGCTGCGCTGGGAGTGTTTGTGCTCCTT
ATGGCCGTGGCCACCTTGCGCCATTTGCAGTCCGTGCTGTCGCGCAACGA
GTTCCGGAAGCTGTTCATCGTCGGCGGATTGCTGGTGGGCGTTGGCGTCT
TTGTGGCCGTCGTGGTGCTCACCATGCTGGGCGTTGTGGCCCCGTGGAGT
GGACGCTTCTACTCGCTGTGGGATACTGGCTACGCCAAGATCCACATTCC
CATCATTGCATCCGTGTCGGAGCATCAGCCCACCACTTGGTTCTCGTTCT
TCTTTGATCTGCACATCCTGGTGTGCGCCTTCCCAGTGGGAGTGTGGTAC
TGCATCAAGCAGATCAACGACGAGCGCGTTTTCGTGGTGCTGTACGCCAT
CAGTGCGGTTTACTTCGCTGGTGTGATGGTGCGTTTGATGTTGACCCTCA
CGCCGGTGGTGTGCATGCTGGCCGGAGTGGCCTTTTCGGGACTGTTGGAT
GTGTTCCTGCAAGAGGATTCGTCTAAGCGAATGGGCACAGCCATAAGCGC
AGCCACCGAAGTGGATGAAGCTGAGGATTCCATTGAGAAGAAGACGCTGT
ACGACAAGGCTGGCAAGCTGAAGCATCGTACTAAGCATGATGCCCAGCAG
GATACTGGCGTCAGCTCCAACCTGAAGAGTATTGTTATTTTGGCCGTTCT
AATGCTGTTGATGATGTTCGCTGTCCACTGCACGTGGGTGACCAGCAATG
CCTACTCCAGTCCCTCCATTGTCTTGGCTTTCCACAACAGTCAAGATGGA
TCCCGCAACATTTTAGACGATTTCAGAGAGGCTTACTACTGGCTTTCGCA
GAACACTGCCGATGATGCTCGCGTTATGTCTTGGTGGGATTACGGATACC
AGATAGCGGGAATGGCAAACAGAACGACGCTAGTGGATAATAATACGTGG
AACAATAGTCACATAGCGCTGGTTGGCAAGGCAATGTCTTCAACCGAGGA
GAAGTCCTACGAAATTATGACATCTCTTGACGTGGACTACGTTTTGGTGA
TCTTTGGCGGTGTGATCGGCTATTCTGGCGATGATATCAACAAGTTCCTG
TGGATGGTCCGAATTGCTGAGGGAGAGCATCCCAAGGACATTAAGGAAAG
CGATTACTTTACCGACCGCGGTGAATTCAGGGTAGATGCCGAAGGTGCTC
CGGCCCTGCTCAACTGCCTTATGTACAAATTAAGCTACTACAGATTCGGG
GAATTGAAGTTGGACTACAGAGGTCCATCTGGATATGATCGCACACGTAA
CGCCGTCATTGGGAATAAGGACTTCGATCTGACCTACCTGGAGGAGGCCT
ACACCACAGAACACTGGCTTGTTCGCATCTATAGGGTGAAGAAGCCGCAT
GAGTTCAATAGACCATCACTGAAGACCAAGGAGAGAACGATTCCTCCAGC
AAACTTCATTTCGAGAAAGAACTCTAAGCGTCGCAAGGGCTACATACGAA
ACCGACCGGTTGTTGTTAAGGGAAAACGAACCTTGAAATAAAAGCTTTCT
AGACCAT

BS03603.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:23:46
Subject Length Description Subject Range Query Range Score Percent Strand
OstStt3-RA 2325 CG7748-PA 1..2325 17..2341 11625 100 Plus
CG1518-RC 2142 CG1518-PC 1527..1840 1603..1916 415 75.5 Plus
CG1518-RA 2142 CG1518-PA 1527..1840 1603..1916 415 75.5 Plus
CG1518-RC 2142 CG1518-PC 145..291 152..298 225 76.9 Plus
CG1518-RC 2142 CG1518-PC 1023..1115 1030..1122 210 81.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:23:48
Subject Length Description Subject Range Query Range Score Percent Strand
OstStt3-RA 2703 CG7748-RA 81..2409 14..2342 11645 100 Plus
CG1518-RC 2755 CG1518-RC 1754..2067 1603..1916 415 75.5 Plus
CG1518-RA 2676 CG1518-RA 1754..2067 1603..1916 415 75.5 Plus
CG1518-RC 2755 CG1518-RC 372..518 152..298 225 76.9 Plus
CG1518-RC 2755 CG1518-RC 1250..1342 1030..1122 210 81.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:23:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25068162..25069557 1409..14 6980 100 Minus
3R 32079331 3R 25067385..25067856 2070..1599 2360 100 Minus
3R 32079331 3R 25067133..25067334 2269..2068 1010 100 Minus
3R 32079331 3R 25067913..25068105 1599..1407 965 100 Minus
3R 32079331 3R 25067006..25067080 2342..2268 375 100 Minus
X 23542271 X 21050573..21050822 1916..1667 335 75.6 Minus
X 23542271 X 21053036..21053182 298..152 225 76.9 Minus
X 23542271 X 21052549..21052762 687..474 200 72.9 Minus
Blast to na_te.dros performed on 2014-11-28 02:23:45 has no hits.

BS03603.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:14 Download gff for BS03603.complete
Subject Subject Range Query Range Percent Splice Strand
OstStt3-RA 97..2419 17..2339 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:13:11 Download gff for BS03603.complete
Subject Subject Range Query Range Percent Splice Strand
OstStt3-RA 84..2406 17..2339 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:18:53 Download gff for BS03603.complete
Subject Subject Range Query Range Percent Splice Strand
OstStt3-RA 97..2419 17..2339 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:30 Download gff for BS03603.complete
Subject Subject Range Query Range Percent Splice Strand
OstStt3-RA 84..2406 17..2339 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:30 Download gff for BS03603.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25067009..25067078 2270..2339 100 <- Minus
3R 25067133..25067331 2071..2269 100 <- Minus
3R 25067385..25067855 1600..2070 100 <- Minus
3R 25067913..25068103 1409..1599 100 <- Minus
3R 25068163..25069554 17..1408 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:13:11 Download gff for BS03603.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20892731..20892800 2270..2339 100 <- Minus
arm_3R 20892855..20893053 2071..2269 100 <- Minus
arm_3R 20893107..20893577 1600..2070 100 <- Minus
arm_3R 20893635..20893825 1409..1599 100 <- Minus
arm_3R 20893885..20895276 17..1408 100   Minus

BS03603.3prime Sequence

947 bp (732 high quality bases) assembled on 2005-12-01

> BS03603.3prime
ATGGTCTAGAAAGCTTTTATTTCAAGGTTCGTTTTCCCTTAACAACAACC
GGTCGGTTTCGTATGTAGCCCTTGCGACGCTTAGAGTTCTTTCTCGAAAT
GAAGTTTGCTGGAGGAATCGTTCTCTCCTTGGTCTTCAGTGATGGTCTAT
TGAACTCATGCGGCTTCTTCACCCTATAGATGCGAACAAGCCAGTGTTCT
GTGGTGTAGGCCTCCTCCAGGTAGGTCAGATCGAAGTCCTTATTCCCAAT
GACGGCGTTACGTGTGCGATCATATCCAGATGGACCTCTGTAGTCCAACT
TCAATTCCCCGAATCTGTAGTAGCTTAATTTGTACATAAGGCAGTTGAGC
AGGGCCGGAGCACCTTCGGCATCTACCCTGAATTCACCGCGGTCGGTAAA
GTAATCGCTTTCCTTAATGTCCTTGGGATGCTCTCCCTCAGCAATTCGGA
CCATCCACAGGAACTTGTTGATATCATCGCCAGAATAGCCGATCACACCG
CCAAAGATCACCAAAACGTAGTCCACGTCAAGAGATGTCATAATTTCGTA
GGACTTCTCCTCGGTTGAAGACATTGCCTTGCCAACCAGCGCTATGTGAC
TATTGTTCCACGTATTATTATCCACTAGCGTCGTTCTGTTTGCCATTCCC
GCTATCTGGTATCCGTAATCCCACCAAGACATAACGCGAGCATCATCGGC
AGTGTTCTGCGAAAGCCAGTAGTAAGCCTCTCTGAAATCGTCTAAAATGT
TGCGGGATCCATCTTGACTGTTGTGGAAAGCCAAGACAATGGAGGGACTG
GAGTAGGCATTGCTGGTCACCCACGTGCAGTGGACAGCGAACATCATCAA
CAGCATTAGAACGGCCAAAATAACAATACTCTTCAGGTTGGAGCTGACGC
CAGTATCCTGCTGGGCATCATGCTTAGTACGATGCTTCAGCTTGCCA

BS03603.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG7748-PA 2325 OstStt3-RA 1395..2325 947..17 4655 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:57:15
Subject Length Description Subject Range Query Range Score Percent Strand
OstStt3-RA 2703 CG7748-RA 1478..2409 947..16 4660 100 Minus
CG1518-RC 2755 CG1518-RC 1754..2067 755..442 415 75.9 Minus
CG1518-RA 2676 CG1518-RA 1754..2067 755..442 415 75.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:57:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25067385..25067856 288..759 2360 100 Plus
3R 32079331 3R 25067133..25067334 89..290 1010 100 Plus
3R 32079331 3R 25067913..25068101 759..947 945 100 Plus
3R 32079331 3R 25067006..25067080 16..90 375 100 Plus
X 23542271 X 21050573..21050822 442..691 335 75.6 Plus
Blast to na_te.dros performed on 2015-01-31 14:57:13 has no hits.

BS03603.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:04 Download gff for BS03603.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7748-PA 1396..2325 17..946 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:43:14 Download gff for BS03603.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7748-PA 1396..2325 17..946 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:22:34 Download gff for BS03603.3prime
Subject Subject Range Query Range Percent Splice Strand
OstStt3-RA 1479..2409 16..946 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:39:24 Download gff for BS03603.3prime
Subject Subject Range Query Range Percent Splice Strand
OstStt3-RA 1479..2409 16..946 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:39:24 Download gff for BS03603.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25067006..25067078 16..88 100 <- Plus
3R 25067133..25067331 89..287 100 <- Plus
3R 25067385..25067855 288..758 100 <- Plus
3R 25067913..25068100 759..946 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:22:34 Download gff for BS03603.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20892728..20892800 16..88 100 <- Plus
arm_3R 20892855..20893053 89..287 100 <- Plus
arm_3R 20893107..20893577 288..758 100 <- Plus
arm_3R 20893635..20893822 759..946 100   Plus

BS03603.5prime Sequence

950 bp (795 high quality bases) assembled on 2005-12-01

> BS03603.5prime
GAAGTTATCAGTCGACATGAATCGGACGCCGAAGATGCTGAACAGCAAGG
TGGCTGGCTACAGCAGCCTAATCACCTTCGCCATCCTGCTAATCGCCTGG
CTGGCCGGATTTTCCTCTCGCCTCTTCGCCGTCATCCGTTTCGAGTCGAT
TATCCATGAGTTTGATCCGTGGTTCAACTACCGGGCCACCGCCTACATGG
TGCAGAATGGTTGGTACAACTTCCTCAACTGGTTCGACGAGCGCGCATGG
TATCCGCTCGGCAGGATTGTGGGCGGTACCGTCTATCCCGGCCTGATGAT
TACGTCCGGCGGAATCCATTGGCTGCTGCACGTACTCAACATACCGGTCC
ATATTCGTGACATCTGCGTGTTCCTGGCGCCGATCTTCAGTGGCCTGACC
TCCATCTCCACCTACCTGCTGACCAAGGAGCTGTGGTCCGCGGGCGCCGG
CCTCTTCGCCGCCAGCTTCATCGCCATCGTGCCTGGCTACATCAGTAGGT
CGGTGGCTGGATCGTACGATAACGAGGGCATTGCCATATTCGCCCTGCAG
TTCACCTACTTCCTGTGGGTGCGCTCAGTGAAGACTGGATCCGTGTTCTG
GTCGGCCGCAGCCGCTTTGTCCTACTTCTACATGGTGTCCGCCTGGGGTG
GCTACGTGTTCATCATCAACCTGATACCCCTGCACGTCTTCGTACTGCTC
ATTATGGGCAGGTACTCGCCGCGTCTGCTGACCAGCTACAGCACCTTCTA
CATCCTGGGACTGCTGTTCTCCATGCAGATCCCCTTCGTGGGATTCAACC
GATACGCACCAGTGAACACATGGCTGCGCTGGGAGTGTTTGTGCTCCTTA
TGGCCGTGGCCACCTTGCGCCATTTGCAGTCCGTGCTGTCGCGCAACGAG
TTCCCGGAAGCTGTTCATCGTCGGCGGGATGCTGGTGGGCGTTGGCCTCT

BS03603.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7748-PA 2325 OstStt3-RA 1..780 17..796 3900 100 Plus
CG7748-PA 2325 OstStt3-RA 781..889 796..904 545 100 Plus
CG7748-PA 2325 OstStt3-RA 888..930 904..946 165 95.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
OstStt3-RA 2703 CG7748-RA 81..1017 14..950 4595 99.5 Plus
CG1518-RC 2755 CG1518-RC 372..518 152..298 240 78.4 Plus
CG1518-RA 2676 CG1518-RA 372..518 152..298 240 78.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:29:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25068621..25069557 950..14 4545 99.5 Minus
X 23542271 X 21053036..21053182 298..152 225 76.9 Minus
X 23542271 X 21052549..21052762 687..474 200 72.9 Minus
Blast to na_te.dros performed on 2015-02-12 05:29:49 has no hits.

BS03603.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:05 Download gff for BS03603.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7748-PA 1..934 17..950 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:43:15 Download gff for BS03603.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7748-PA 1..934 17..950 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:33:09 Download gff for BS03603.5prime
Subject Subject Range Query Range Percent Splice Strand
OstStt3-RA 76..1017 7..950 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:33:37 Download gff for BS03603.5prime
Subject Subject Range Query Range Percent Splice Strand
OstStt3-RA 76..1017 7..950 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:33:37 Download gff for BS03603.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25068621..25069562 7..950 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:33:09 Download gff for BS03603.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20894343..20895284 7..950 99   Minus

BS03603.pep Sequence

Translation from 16 to 2340

> BS03603.pep
MNRTPKMLNSKVAGYSSLITFAILLIAWLAGFSSRLFAVIRFESIIHEFD
PWFNYRATAYMVQNGWYNFLNWFDERAWYPLGRIVGGTVYPGLMITSGGI
HWLLHVLNIPVHIRDICVFLAPIFSGLTSISTYLLTKELWSAGAGLFAAS
FIAIVPGYISRSVAGSYDNEGIAIFALQFTYFLWVRSVKTGSVFWSAAAA
LSYFYMVSAWGGYVFIINLIPLHVFVLLIMGRYSPRLLTSYSTFYILGLL
FSMQIPFVGFQPIRTSEHMAALGVFVLLMAVATLRHLQSVLSRNEFRKLF
IVGGLLVGVGVFVAVVVLTMLGVVAPWSGRFYSLWDTGYAKIHIPIIASV
SEHQPTTWFSFFFDLHILVCAFPVGVWYCIKQINDERVFVVLYAISAVYF
AGVMVRLMLTLTPVVCMLAGVAFSGLLDVFLQEDSSKRMGTAISAATEVD
EAEDSIEKKTLYDKAGKLKHRTKHDAQQDTGVSSNLKSIVILAVLMLLMM
FAVHCTWVTSNAYSSPSIVLAFHNSQDGSRNILDDFREAYYWLSQNTADD
ARVMSWWDYGYQIAGMANRTTLVDNNTWNNSHIALVGKAMSSTEEKSYEI
MTSLDVDYVLVIFGGVIGYSGDDINKFLWMVRIAEGEHPKDIKESDYFTD
RGEFRVDAEGAPALLNCLMYKLSYYRFGELKLDYRGPSGYDRTRNAVIGN
KDFDLTYLEEAYTTEHWLVRIYRVKKPHEFNRPSLKTKERTIPPANFISR
KNSKRRKGYIRNRPVVVKGKRTLK*

BS03603.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:53:17
Subject Length Description Subject Range Query Range Score Percent Strand
OstStt3-PA 774 CG7748-PA 1..774 1..774 4046 100 Plus
CG1518-PC 713 CG1518-PC 21..706 18..725 2202 58.1 Plus
CG1518-PA 713 CG1518-PA 21..706 18..725 2202 58.1 Plus