Clone Sequence Records
BS03603.complete Sequence
2357 bp assembled on 2009-12-07
GenBank Submission: KX795848
> BS03603.complete
GAAGTTATCAGTCGACATGAATCGGACGCCGAAGATGCTGAACAGCAAGG
TGGCTGGCTACAGCAGCCTAATCACCTTCGCCATCCTGCTAATCGCCTGG
CTGGCCGGATTTTCCTCTCGCCTCTTCGCCGTCATCCGTTTCGAGTCGAT
TATCCATGAGTTTGATCCGTGGTTCAACTACCGGGCCACCGCCTACATGG
TGCAGAATGGTTGGTACAACTTCCTCAACTGGTTCGACGAGCGCGCATGG
TATCCGCTCGGCAGGATTGTGGGCGGTACCGTCTATCCCGGCCTGATGAT
TACGTCCGGCGGAATCCATTGGCTGCTGCACGTACTCAACATACCGGTCC
ATATTCGTGACATCTGCGTGTTCCTGGCGCCGATCTTCAGTGGCCTGACC
TCCATCTCCACCTACCTGCTGACCAAGGAGCTGTGGTCCGCGGGCGCCGG
CCTCTTCGCCGCCAGCTTCATCGCCATCGTGCCTGGCTACATCAGTAGGT
CGGTGGCTGGATCGTACGATAACGAGGGCATTGCCATATTCGCCCTGCAG
TTCACCTACTTCCTGTGGGTGCGCTCAGTGAAGACTGGATCCGTGTTCTG
GTCGGCCGCAGCCGCTTTGTCCTACTTCTACATGGTGTCCGCCTGGGGTG
GCTACGTGTTCATCATCAACCTGATACCCCTGCACGTCTTCGTACTGCTC
ATTATGGGCAGGTACTCGCCGCGTCTGCTGACCAGCTACAGCACCTTCTA
CATCCTGGGACTGCTGTTCTCCATGCAGATCCCCTTCGTGGGATTCCAAC
CGATACGCACCAGTGAACACATGGCTGCGCTGGGAGTGTTTGTGCTCCTT
ATGGCCGTGGCCACCTTGCGCCATTTGCAGTCCGTGCTGTCGCGCAACGA
GTTCCGGAAGCTGTTCATCGTCGGCGGATTGCTGGTGGGCGTTGGCGTCT
TTGTGGCCGTCGTGGTGCTCACCATGCTGGGCGTTGTGGCCCCGTGGAGT
GGACGCTTCTACTCGCTGTGGGATACTGGCTACGCCAAGATCCACATTCC
CATCATTGCATCCGTGTCGGAGCATCAGCCCACCACTTGGTTCTCGTTCT
TCTTTGATCTGCACATCCTGGTGTGCGCCTTCCCAGTGGGAGTGTGGTAC
TGCATCAAGCAGATCAACGACGAGCGCGTTTTCGTGGTGCTGTACGCCAT
CAGTGCGGTTTACTTCGCTGGTGTGATGGTGCGTTTGATGTTGACCCTCA
CGCCGGTGGTGTGCATGCTGGCCGGAGTGGCCTTTTCGGGACTGTTGGAT
GTGTTCCTGCAAGAGGATTCGTCTAAGCGAATGGGCACAGCCATAAGCGC
AGCCACCGAAGTGGATGAAGCTGAGGATTCCATTGAGAAGAAGACGCTGT
ACGACAAGGCTGGCAAGCTGAAGCATCGTACTAAGCATGATGCCCAGCAG
GATACTGGCGTCAGCTCCAACCTGAAGAGTATTGTTATTTTGGCCGTTCT
AATGCTGTTGATGATGTTCGCTGTCCACTGCACGTGGGTGACCAGCAATG
CCTACTCCAGTCCCTCCATTGTCTTGGCTTTCCACAACAGTCAAGATGGA
TCCCGCAACATTTTAGACGATTTCAGAGAGGCTTACTACTGGCTTTCGCA
GAACACTGCCGATGATGCTCGCGTTATGTCTTGGTGGGATTACGGATACC
AGATAGCGGGAATGGCAAACAGAACGACGCTAGTGGATAATAATACGTGG
AACAATAGTCACATAGCGCTGGTTGGCAAGGCAATGTCTTCAACCGAGGA
GAAGTCCTACGAAATTATGACATCTCTTGACGTGGACTACGTTTTGGTGA
TCTTTGGCGGTGTGATCGGCTATTCTGGCGATGATATCAACAAGTTCCTG
TGGATGGTCCGAATTGCTGAGGGAGAGCATCCCAAGGACATTAAGGAAAG
CGATTACTTTACCGACCGCGGTGAATTCAGGGTAGATGCCGAAGGTGCTC
CGGCCCTGCTCAACTGCCTTATGTACAAATTAAGCTACTACAGATTCGGG
GAATTGAAGTTGGACTACAGAGGTCCATCTGGATATGATCGCACACGTAA
CGCCGTCATTGGGAATAAGGACTTCGATCTGACCTACCTGGAGGAGGCCT
ACACCACAGAACACTGGCTTGTTCGCATCTATAGGGTGAAGAAGCCGCAT
GAGTTCAATAGACCATCACTGAAGACCAAGGAGAGAACGATTCCTCCAGC
AAACTTCATTTCGAGAAAGAACTCTAAGCGTCGCAAGGGCTACATACGAA
ACCGACCGGTTGTTGTTAAGGGAAAACGAACCTTGAAATAAAAGCTTTCT
AGACCAT
BS03603.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:23:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
OstStt3-RA | 2325 | CG7748-PA | 1..2325 | 17..2341 | 11625 | 100 | Plus |
CG1518-RC | 2142 | CG1518-PC | 1527..1840 | 1603..1916 | 415 | 75.5 | Plus |
CG1518-RA | 2142 | CG1518-PA | 1527..1840 | 1603..1916 | 415 | 75.5 | Plus |
CG1518-RC | 2142 | CG1518-PC | 145..291 | 152..298 | 225 | 76.9 | Plus |
CG1518-RC | 2142 | CG1518-PC | 1023..1115 | 1030..1122 | 210 | 81.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:23:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
OstStt3-RA | 2703 | CG7748-RA | 81..2409 | 14..2342 | 11645 | 100 | Plus |
CG1518-RC | 2755 | CG1518-RC | 1754..2067 | 1603..1916 | 415 | 75.5 | Plus |
CG1518-RA | 2676 | CG1518-RA | 1754..2067 | 1603..1916 | 415 | 75.5 | Plus |
CG1518-RC | 2755 | CG1518-RC | 372..518 | 152..298 | 225 | 76.9 | Plus |
CG1518-RC | 2755 | CG1518-RC | 1250..1342 | 1030..1122 | 210 | 81.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:23:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25068162..25069557 | 1409..14 | 6980 | 100 | Minus |
3R | 32079331 | 3R | 25067385..25067856 | 2070..1599 | 2360 | 100 | Minus |
3R | 32079331 | 3R | 25067133..25067334 | 2269..2068 | 1010 | 100 | Minus |
3R | 32079331 | 3R | 25067913..25068105 | 1599..1407 | 965 | 100 | Minus |
3R | 32079331 | 3R | 25067006..25067080 | 2342..2268 | 375 | 100 | Minus |
X | 23542271 | X | 21050573..21050822 | 1916..1667 | 335 | 75.6 | Minus |
X | 23542271 | X | 21053036..21053182 | 298..152 | 225 | 76.9 | Minus |
X | 23542271 | X | 21052549..21052762 | 687..474 | 200 | 72.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:23:45 has no hits.
BS03603.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:14 Download gff for
BS03603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
OstStt3-RA | 97..2419 | 17..2339 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:13:11 Download gff for
BS03603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
OstStt3-RA | 84..2406 | 17..2339 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:18:53 Download gff for
BS03603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
OstStt3-RA | 97..2419 | 17..2339 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:30 Download gff for
BS03603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
OstStt3-RA | 84..2406 | 17..2339 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:30 Download gff for
BS03603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25067009..25067078 | 2270..2339 | 100 | <- | Minus |
3R | 25067133..25067331 | 2071..2269 | 100 | <- | Minus |
3R | 25067385..25067855 | 1600..2070 | 100 | <- | Minus |
3R | 25067913..25068103 | 1409..1599 | 100 | <- | Minus |
3R | 25068163..25069554 | 17..1408 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:13:11 Download gff for
BS03603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20892731..20892800 | 2270..2339 | 100 | <- | Minus |
arm_3R | 20892855..20893053 | 2071..2269 | 100 | <- | Minus |
arm_3R | 20893107..20893577 | 1600..2070 | 100 | <- | Minus |
arm_3R | 20893635..20893825 | 1409..1599 | 100 | <- | Minus |
arm_3R | 20893885..20895276 | 17..1408 | 100 | | Minus |
BS03603.3prime Sequence
947 bp (732 high quality bases) assembled on 2005-12-01
> BS03603.3prime
ATGGTCTAGAAAGCTTTTATTTCAAGGTTCGTTTTCCCTTAACAACAACC
GGTCGGTTTCGTATGTAGCCCTTGCGACGCTTAGAGTTCTTTCTCGAAAT
GAAGTTTGCTGGAGGAATCGTTCTCTCCTTGGTCTTCAGTGATGGTCTAT
TGAACTCATGCGGCTTCTTCACCCTATAGATGCGAACAAGCCAGTGTTCT
GTGGTGTAGGCCTCCTCCAGGTAGGTCAGATCGAAGTCCTTATTCCCAAT
GACGGCGTTACGTGTGCGATCATATCCAGATGGACCTCTGTAGTCCAACT
TCAATTCCCCGAATCTGTAGTAGCTTAATTTGTACATAAGGCAGTTGAGC
AGGGCCGGAGCACCTTCGGCATCTACCCTGAATTCACCGCGGTCGGTAAA
GTAATCGCTTTCCTTAATGTCCTTGGGATGCTCTCCCTCAGCAATTCGGA
CCATCCACAGGAACTTGTTGATATCATCGCCAGAATAGCCGATCACACCG
CCAAAGATCACCAAAACGTAGTCCACGTCAAGAGATGTCATAATTTCGTA
GGACTTCTCCTCGGTTGAAGACATTGCCTTGCCAACCAGCGCTATGTGAC
TATTGTTCCACGTATTATTATCCACTAGCGTCGTTCTGTTTGCCATTCCC
GCTATCTGGTATCCGTAATCCCACCAAGACATAACGCGAGCATCATCGGC
AGTGTTCTGCGAAAGCCAGTAGTAAGCCTCTCTGAAATCGTCTAAAATGT
TGCGGGATCCATCTTGACTGTTGTGGAAAGCCAAGACAATGGAGGGACTG
GAGTAGGCATTGCTGGTCACCCACGTGCAGTGGACAGCGAACATCATCAA
CAGCATTAGAACGGCCAAAATAACAATACTCTTCAGGTTGGAGCTGACGC
CAGTATCCTGCTGGGCATCATGCTTAGTACGATGCTTCAGCTTGCCA
BS03603.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7748-PA | 2325 | OstStt3-RA | 1395..2325 | 947..17 | 4655 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:57:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
OstStt3-RA | 2703 | CG7748-RA | 1478..2409 | 947..16 | 4660 | 100 | Minus |
CG1518-RC | 2755 | CG1518-RC | 1754..2067 | 755..442 | 415 | 75.9 | Minus |
CG1518-RA | 2676 | CG1518-RA | 1754..2067 | 755..442 | 415 | 75.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:57:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25067385..25067856 | 288..759 | 2360 | 100 | Plus |
3R | 32079331 | 3R | 25067133..25067334 | 89..290 | 1010 | 100 | Plus |
3R | 32079331 | 3R | 25067913..25068101 | 759..947 | 945 | 100 | Plus |
3R | 32079331 | 3R | 25067006..25067080 | 16..90 | 375 | 100 | Plus |
X | 23542271 | X | 21050573..21050822 | 442..691 | 335 | 75.6 | Plus |
Blast to na_te.dros performed on 2015-01-31 14:57:13 has no hits.
BS03603.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:04 Download gff for
BS03603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7748-PA | 1396..2325 | 17..946 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:43:14 Download gff for
BS03603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7748-PA | 1396..2325 | 17..946 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:22:34 Download gff for
BS03603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
OstStt3-RA | 1479..2409 | 16..946 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:39:24 Download gff for
BS03603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
OstStt3-RA | 1479..2409 | 16..946 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:39:24 Download gff for
BS03603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25067006..25067078 | 16..88 | 100 | <- | Plus |
3R | 25067133..25067331 | 89..287 | 100 | <- | Plus |
3R | 25067385..25067855 | 288..758 | 100 | <- | Plus |
3R | 25067913..25068100 | 759..946 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:22:34 Download gff for
BS03603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20892728..20892800 | 16..88 | 100 | <- | Plus |
arm_3R | 20892855..20893053 | 89..287 | 100 | <- | Plus |
arm_3R | 20893107..20893577 | 288..758 | 100 | <- | Plus |
arm_3R | 20893635..20893822 | 759..946 | 100 | | Plus |
BS03603.5prime Sequence
950 bp (795 high quality bases) assembled on 2005-12-01
> BS03603.5prime
GAAGTTATCAGTCGACATGAATCGGACGCCGAAGATGCTGAACAGCAAGG
TGGCTGGCTACAGCAGCCTAATCACCTTCGCCATCCTGCTAATCGCCTGG
CTGGCCGGATTTTCCTCTCGCCTCTTCGCCGTCATCCGTTTCGAGTCGAT
TATCCATGAGTTTGATCCGTGGTTCAACTACCGGGCCACCGCCTACATGG
TGCAGAATGGTTGGTACAACTTCCTCAACTGGTTCGACGAGCGCGCATGG
TATCCGCTCGGCAGGATTGTGGGCGGTACCGTCTATCCCGGCCTGATGAT
TACGTCCGGCGGAATCCATTGGCTGCTGCACGTACTCAACATACCGGTCC
ATATTCGTGACATCTGCGTGTTCCTGGCGCCGATCTTCAGTGGCCTGACC
TCCATCTCCACCTACCTGCTGACCAAGGAGCTGTGGTCCGCGGGCGCCGG
CCTCTTCGCCGCCAGCTTCATCGCCATCGTGCCTGGCTACATCAGTAGGT
CGGTGGCTGGATCGTACGATAACGAGGGCATTGCCATATTCGCCCTGCAG
TTCACCTACTTCCTGTGGGTGCGCTCAGTGAAGACTGGATCCGTGTTCTG
GTCGGCCGCAGCCGCTTTGTCCTACTTCTACATGGTGTCCGCCTGGGGTG
GCTACGTGTTCATCATCAACCTGATACCCCTGCACGTCTTCGTACTGCTC
ATTATGGGCAGGTACTCGCCGCGTCTGCTGACCAGCTACAGCACCTTCTA
CATCCTGGGACTGCTGTTCTCCATGCAGATCCCCTTCGTGGGATTCAACC
GATACGCACCAGTGAACACATGGCTGCGCTGGGAGTGTTTGTGCTCCTTA
TGGCCGTGGCCACCTTGCGCCATTTGCAGTCCGTGCTGTCGCGCAACGAG
TTCCCGGAAGCTGTTCATCGTCGGCGGGATGCTGGTGGGCGTTGGCCTCT
BS03603.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7748-PA | 2325 | OstStt3-RA | 1..780 | 17..796 | 3900 | 100 | Plus |
CG7748-PA | 2325 | OstStt3-RA | 781..889 | 796..904 | 545 | 100 | Plus |
CG7748-PA | 2325 | OstStt3-RA | 888..930 | 904..946 | 165 | 95.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:29:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
OstStt3-RA | 2703 | CG7748-RA | 81..1017 | 14..950 | 4595 | 99.5 | Plus |
CG1518-RC | 2755 | CG1518-RC | 372..518 | 152..298 | 240 | 78.4 | Plus |
CG1518-RA | 2676 | CG1518-RA | 372..518 | 152..298 | 240 | 78.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:29:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25068621..25069557 | 950..14 | 4545 | 99.5 | Minus |
X | 23542271 | X | 21053036..21053182 | 298..152 | 225 | 76.9 | Minus |
X | 23542271 | X | 21052549..21052762 | 687..474 | 200 | 72.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:29:49 has no hits.
BS03603.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:05 Download gff for
BS03603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7748-PA | 1..934 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:43:15 Download gff for
BS03603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7748-PA | 1..934 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:33:09 Download gff for
BS03603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
OstStt3-RA | 76..1017 | 7..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:33:37 Download gff for
BS03603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
OstStt3-RA | 76..1017 | 7..950 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:33:37 Download gff for
BS03603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25068621..25069562 | 7..950 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:33:09 Download gff for
BS03603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20894343..20895284 | 7..950 | 99 | | Minus |
BS03603.pep Sequence
Translation from 16 to 2340
> BS03603.pep
MNRTPKMLNSKVAGYSSLITFAILLIAWLAGFSSRLFAVIRFESIIHEFD
PWFNYRATAYMVQNGWYNFLNWFDERAWYPLGRIVGGTVYPGLMITSGGI
HWLLHVLNIPVHIRDICVFLAPIFSGLTSISTYLLTKELWSAGAGLFAAS
FIAIVPGYISRSVAGSYDNEGIAIFALQFTYFLWVRSVKTGSVFWSAAAA
LSYFYMVSAWGGYVFIINLIPLHVFVLLIMGRYSPRLLTSYSTFYILGLL
FSMQIPFVGFQPIRTSEHMAALGVFVLLMAVATLRHLQSVLSRNEFRKLF
IVGGLLVGVGVFVAVVVLTMLGVVAPWSGRFYSLWDTGYAKIHIPIIASV
SEHQPTTWFSFFFDLHILVCAFPVGVWYCIKQINDERVFVVLYAISAVYF
AGVMVRLMLTLTPVVCMLAGVAFSGLLDVFLQEDSSKRMGTAISAATEVD
EAEDSIEKKTLYDKAGKLKHRTKHDAQQDTGVSSNLKSIVILAVLMLLMM
FAVHCTWVTSNAYSSPSIVLAFHNSQDGSRNILDDFREAYYWLSQNTADD
ARVMSWWDYGYQIAGMANRTTLVDNNTWNNSHIALVGKAMSSTEEKSYEI
MTSLDVDYVLVIFGGVIGYSGDDINKFLWMVRIAEGEHPKDIKESDYFTD
RGEFRVDAEGAPALLNCLMYKLSYYRFGELKLDYRGPSGYDRTRNAVIGN
KDFDLTYLEEAYTTEHWLVRIYRVKKPHEFNRPSLKTKERTIPPANFISR
KNSKRRKGYIRNRPVVVKGKRTLK*
BS03603.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:53:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
OstStt3-PA | 774 | CG7748-PA | 1..774 | 1..774 | 4046 | 100 | Plus |
CG1518-PC | 713 | CG1518-PC | 21..706 | 18..725 | 2202 | 58.1 | Plus |
CG1518-PA | 713 | CG1518-PA | 21..706 | 18..725 | 2202 | 58.1 | Plus |