Clone BS03606 Report

Search the DGRC for BS03606

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:36
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptFpps-RA
Protein status:BS03606.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03606.3prime Sequence

920 bp (829 high quality bases) assembled on 2005-12-01

> BS03606.3prime
ATGGTCTAGAAAGCTTTTAGGAGTCACGTTGGTAGATTTTGTTGAGTATT
TGCAGGAAGGTCTGGTGAGGCACCCCGCGTGAGGTTTGTTGTATGTGCGT
TTTAATCATGTTGTAGGATTCCTCCTCGAAAATGGCATAGGTGGATGGCA
GTCCAAGTTCCTTGTACAGTTCTTTCACTCTCTCCACTTTAGCTGGTTCT
TCTTTGCCATAGCAATCGACCATGATTTGCTTTTGCTCGACATTGGCTCG
CTGCATAGCCACCACAGCCAGCCACGAGCACTTGTTGTCCTGAATGTCGG
TTCCAATTTTACCAGTCACTTCCGGATTACCGAAGCAGTCGAGAAAATCA
TCTTGAACCTGGAAAAAGTTGCCCATTTCTAGGAGAATGGTCTTCGATTG
ACGGAAGGCCTCTGCGTCTTTATAGCCAGCCAAGTGCAAAGCAAGTGCGA
ATGGAAGGTAGAAGGAGTAATAGGCAGTCTTATTTTCGACAATTGCTTTG
TAGTTTTCCATTGTGAATTCCGAGACACAGCGGTTCGAGTTCAGTTGGTC
CAACGATTGTCCGCAGGTAGTGATGTATGTGATTTCGTGGAAGAGCTCCA
TTAGGGCGACATAGCAGTCCAAGTGGCTGAAGTGCTTCTTGAGAATGGCA
TACATGGCGTTTTCAATCATAAGAGCATCGTTAATGGCAGTCAGGCCCAC
GTTCTCCACCTTGTGCCAGCAGGGTTGGCCGCGTCTGGTGGTGCTGTTGT
CCATCACATCGTCTGAGATGATGAAAAAACTTTGGAGCATTTCCACGCAC
CAGCCCAGATACTGGGCGAGCTTTATGTTCTCGGGCGTAAGATCCTGGGT
GGGCACTAGATTCTTATACGTGAGCACGGTGAGGATGCCGCGGTTCTTCT
TGCCCCTGGGCACATTGTAC

BS03606.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG12389-PA 1260 Fpps-RA 357..1260 920..17 4370 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
Fpps-RA 1465 CG12389-RA 443..1347 920..16 4435 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:12:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11306159..11306521 426..788 1815 100 Plus
2R 25286936 2R 11305872..11306099 199..426 1095 98.7 Plus
2R 25286936 2R 11305629..11305813 16..200 910 99.5 Plus
2R 25286936 2R 11306580..11306712 788..920 635 98.5 Plus
Blast to na_te.dros performed on 2015-01-30 16:12:10 has no hits.

BS03606.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:07 Download gff for BS03606.3prime
Subject Subject Range Query Range Percent Splice Strand
Fpps-PA 357..1260 17..920 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:43:18 Download gff for BS03606.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12389-PA 357..1260 17..920 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:22:38 Download gff for BS03606.3prime
Subject Subject Range Query Range Percent Splice Strand
Fpps-RA 443..1352 8..920 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:49:28 Download gff for BS03606.3prime
Subject Subject Range Query Range Percent Splice Strand
Fpps-RA 443..1352 8..920 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:49:28 Download gff for BS03606.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11306580..11306712 788..920 98   Plus
2R 11305624..11305811 8..198 97 <- Plus
2R 11305872..11306098 199..425 98 <- Plus
2R 11306159..11306520 426..787 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:22:38 Download gff for BS03606.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7193129..7193316 8..198 97 <- Plus
arm_2R 7193377..7193603 199..425 98 <- Plus
arm_2R 7193664..7194025 426..787 100 <- Plus
arm_2R 7194085..7194217 788..920 98   Plus

BS03606.5prime Sequence

783 bp (781 high quality bases) assembled on 2005-12-01

> BS03606.5prime
GAAGTTATCAGTCGACATGTTTAAACTGGCCCGTATGCTCCTGCCGCAGC
AGCGGATCCTGGCCAGCCCGCTGCGCCTGCAACGCCTGATCTCTACCAGC
GACGAGGTCAACGCAGAGCCCATCATCAAGTCCATGGACACCATTGGCGG
CCTCCCCACCGAACTGGTCAACGAACAGAAGCTGAAGAAGACTAGCAGAA
CCTTATCGACGCTCCAAAATCACTCGGTTCCCATTGCCGCTCGCGTCACG
GTGTCGAAAGATGAGAGTCGCGACTTTATGGCCGTGTTCCCAGATCTTGT
GCGTGACATCACCACCGTGACGAAGGCATACAATTGCAGCGACGCAGCCA
AATGGTTCGCCCAAGTCCTCCAGTACAATGTGCCCAGGGGCAAGAAGAAC
CGCGGCATCCTCACCGTGCTCACGTATAAGAATCTAGTGCCCACCCAGGA
TCTTACGCCGGAGAACATAAAGCTCGCCCAGTATCTGGGCTGGTGCGTGG
AAATGCTCCAAAGTTTTTTCATCATCTCAGACGATGTGATGGACAACAGC
ACCACCAGACGCGGCCAACCCTGCTGGCACAAGGTGGAGAACGTGGGCCT
GACTGCCATTAACGATGCTCTTATGATTGAAAACGCCATGTATGCCATTC
TCAAGAAGCACTTCAGCCACTTGGACTGCTATGTCGCCCTAATGGAGCTC
TTCCACGAAATCACATACATCACTACCTGCGGACAATCGTTGGACCAACT
GAACTCGAACCGCTGTGTCTCGGAATTCACAAT

BS03606.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG12389-PA 1260 Fpps-RA 1..767 17..783 3810 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
Fpps-RA 1465 CG12389-RA 87..853 17..783 3820 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11306243..11306521 783..505 1395 100 Minus
2R 25286936 2R 11306580..11306794 505..291 1060 99.5 Minus
2R 25286936 2R 11307261..11307442 198..17 910 100 Minus
2R 25286936 2R 11306865..11306962 293..196 490 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:47:53 has no hits.

BS03606.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:08 Download gff for BS03606.5prime
Subject Subject Range Query Range Percent Splice Strand
Fpps-PA 1..767 17..783 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:43:19 Download gff for BS03606.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12389-PA 1..767 17..783 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:30:53 Download gff for BS03606.5prime
Subject Subject Range Query Range Percent Splice Strand
Fpps-RA 87..853 17..783 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:50:22 Download gff for BS03606.5prime
Subject Subject Range Query Range Percent Splice Strand
Fpps-RA 87..853 17..783 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:50:22 Download gff for BS03606.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11306580..11306791 294..505 99 <- Minus
2R 11306865..11306959 199..293 100 <- Minus
2R 11307261..11307442 17..198 100   Minus
2R 11306243..11306520 506..783 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:30:53 Download gff for BS03606.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7193748..7194025 506..783 100 <- Minus
arm_2R 7194085..7194296 294..505 99 <- Minus
arm_2R 7194370..7194464 199..293 100 <- Minus
arm_2R 7194766..7194947 17..198 100   Minus

BS03606.complete Sequence

1292 bp (1292 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634722

> BS03606.complete
GAAGTTATCAGTCGACATGTTTAAACTGGCCCGTATGCTCCTGCCGCAGC
AGCGGATCCTGGCCAGCCCGCTGCGCCTGCAACGCCTGATCTCTACCAGC
GACGAGGTCAACGCAGAGCCCATCATCAAGTCCATGGACACCATTGGCGG
CCTCCCCACCGAACTGGTCAACGAACAGAAGCTGAAGAAGACTAGCAGAA
CCTTATCGACGCTCCAAAATCACTCGGTTCCCATTGCCGCTCGCGTCACG
GTGTCGAAAGATGAGAGTCGCGACTTTATGGCCGTGTTCCCAGATCTTGT
GCGTGACATCACCACCGTGACGAAGGCATACAATTGCAGCGACGCAGCCA
AATGGTTCGCCCAAGTCCTCCAGTACAATGTGCCCAGGGGCAAGAAGAAC
CGCGGCATCCTCACCGTGCTCACGTATAAGAATCTAGTGCCCACCCAGGA
TCTTACGCCGGAGAACATAAAGCTCGCCCAGTATCTGGGCTGGTGCGTGG
AAATGCTCCAAAGTTTTTTCATCATCTCAGACGATGTGATGGACAACAGC
ACCACCAGACGCGGCCAACCCTGCTGGCACAAGGTGGAGAACGTGGGCCT
GACTGCCATTAACGATGCTCTTATGATTGAAAACGCCATGTATGCCATTC
TCAAGAAGCACTTCAGCCACTTGGACTGCTATGTCGCCCTAATGGAGCTC
TTCCACGAAATCACATACATCACTACCTGCGGACAATCGTTGGACCAACT
GAACTCGAACCGCTGTGTCTCGGAATTCACAATGGAAAACTACAAAGCAA
TTGTCGAAAATAAGACTGCCTATTACTCCTTCTACCTTCCATTCGCACTT
GCTTTGCACTTGGCTGGCTATAAAGACGCAGAGGCCTTCCGTCAATCGAA
GACCATTCTCCTAGAAATGGGCAACTTTTTCCAGGTTCAAGATGATTTTC
TCGACTGCTTCGGTAATCCGGAAGTGACTGGTAAAATTGGAACCGACATT
CAGGACAACAAGTGCTCGTGGCTGGCTGTGGTGGCTATGCAGCGAGCCAA
TGTCGAGCAAAAGCAAATCATGGTCGATTGCTATGGCAAAGAAGAACCAG
CTAAAGTGGAGAGAGTGAAAGAACTGTACAAGGAACTTGGACTGCCATCC
ACCTATGCCATTTTCGAGGAGGAATCCTACAACATGATTAAAACGCACAT
ACAACAAACCTCACGCGGGGTGCCTCACCAGACCTTCCTGCAAATACTCA
ACAAAATCTACCAACGTGACTCCTAAAAGCTTTCTAGACCAT

BS03606.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:48:24
Subject Length Description Subject Range Query Range Score Percent Strand
Fpps-RA 1260 CG12389-PA 1..1260 17..1276 6225 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
Fpps-RA 1465 CG12389-RA 87..1347 17..1277 6230 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:48:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11306159..11306521 867..505 1815 100 Minus
2R 25286936 2R 11305872..11306099 1094..867 1095 98.7 Minus
2R 25286936 2R 11306580..11306794 505..291 1060 99.5 Minus
2R 25286936 2R 11305629..11305813 1277..1093 910 99.5 Minus
2R 25286936 2R 11307261..11307442 198..17 910 100 Minus
2R 25286936 2R 11306865..11306962 293..196 490 100 Minus
Blast to na_te.dros performed on 2014-11-26 21:48:23 has no hits.

BS03606.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:29:04 Download gff for BS03606.complete
Subject Subject Range Query Range Percent Splice Strand
Fpps-RA 1..1260 17..1276 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:12:20 Download gff for BS03606.complete
Subject Subject Range Query Range Percent Splice Strand
Fpps-RA 124..1389 17..1285 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:37:14 Download gff for BS03606.complete
Subject Subject Range Query Range Percent Splice Strand
Fpps-RA 93..1344 23..1274 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:29:04 Download gff for BS03606.complete
Subject Subject Range Query Range Percent Splice Strand
Fpps-RA 124..1389 17..1285 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:42:43 Download gff for BS03606.complete
Subject Subject Range Query Range Percent Splice Strand
Fpps-RA 93..1344 23..1274 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:42:43 Download gff for BS03606.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11306580..11306791 294..505 99 <- Minus
2R 11306865..11306959 199..293 100 <- Minus
2R 11307261..11307436 23..198 100   Minus
2R 11306159..11306520 506..867 100 <- Minus
2R 11305632..11305811 1095..1274 99 <- Minus
2R 11305872..11306098 868..1094 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:37:14 Download gff for BS03606.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7194370..7194464 199..293 100 <- Minus
arm_2R 7194085..7194296 294..505 99 <- Minus
arm_2R 7193137..7193316 1095..1274 99 <- Minus
arm_2R 7193377..7193603 868..1094 98 <- Minus
arm_2R 7193664..7194025 506..867 100 <- Minus
arm_2R 7194766..7194941 23..198 100   Minus

BS03606.pep Sequence

Translation from 16 to 1275

> BS03606.pep
MFKLARMLLPQQRILASPLRLQRLISTSDEVNAEPIIKSMDTIGGLPTEL
VNEQKLKKTSRTLSTLQNHSVPIAARVTVSKDESRDFMAVFPDLVRDITT
VTKAYNCSDAAKWFAQVLQYNVPRGKKNRGILTVLTYKNLVPTQDLTPEN
IKLAQYLGWCVEMLQSFFIISDDVMDNSTTRRGQPCWHKVENVGLTAIND
ALMIENAMYAILKKHFSHLDCYVALMELFHEITYITTCGQSLDQLNSNRC
VSEFTMENYKAIVENKTAYYSFYLPFALALHLAGYKDAEAFRQSKTILLE
MGNFFQVQDDFLDCFGNPEVTGKIGTDIQDNKCSWLAVVAMQRANVEQKQ
IMVDCYGKEEPAKVERVKELYKELGLPSTYAIFEEESYNMIKTHIQQTSR
GVPHQTFLQILNKIYQRDS*

BS03606.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:39
Subject Length Description Subject Range Query Range Score Percent Strand
Fpps-PA 419 CG12389-PA 1..419 1..419 2173 100 Plus