Clone Sequence Records
BS03612.complete Sequence
3119 bp assembled on 2009-12-07
GenBank Submission: KX797977
> BS03612.complete
GAAGTTATCAGTCGACATGGAGCGCGAAATAGCGCACAGTTTAGCTGGCG
GCGAGGAACGAAGTAGCGATGTGGCACCTGGACAGGTTAAGACCTTCGAG
GAACTGCGTCTATACCGAAATCTGTTGAACGGATTGAAGCGCAACAATTT
CGTGACGCCAACGAAGATTCAGGCAGCTGCCATACCCATGGCACTGGCCA
AAATGGATCTAATAATACAATCGAAGAGTGGAACTGGCAAAACTCTAATC
TATGTTATAGCCGTCGTTCAGAGCTTTAATCCCAACATAAACCAACCGCA
TGCCATGATCGTGGTCCCAACTCGAGAGCTGGCCATTCAGGTGCAGGACA
CATTTTTCCATCTCTGCAAATCGTTTCGGGACTTTAAATGCTCTGCTTTC
ATCGGTGGCACCGATGTGGCCAAGGATCGCAAGCGAATGAATGAAAGTCG
AGTCATTATCGGTACACCGGGACGTTTGCTGCATCTGTATGAGAATAGAG
TATTCGATGTGTCCAAACTGCGACTGCTGGTGCTCGACGAGGCCGATCAA
CTTTATCAGACAAAGAGCCTGCAGCATACGGTCAGTAAACTCATTGAGGC
AATGCCCAAGAATCGGCAAATAATTGCCTGCAGTGCCACATACGATCAGA
ATTTGGATGAGCGTCTGGCCAAGGTCATGGACAAACCCATGCTTATATCG
AATTCCGAAAGGGCTACCGTTCTACTGGGCATTCGGCAGTTTGTCTACGA
ATTGCCACAGCAGAATAACAGTGTGGAGGAGATGCGTCTTAAACTGCAGA
TTCTTGGCCAGATCTTTAATCAGCTGCCTTACGAACAGGCCATCATCTTT
GCTAGCTCACAAATGCGAGCGGATTCTTACAAGAACTATCTTACAGCCAG
TGGTATCGATTGTCATTTAATTTCGGGAGCCATGGAACAATCGGAGCGTT
TGCATGTTTTCGAGGGCTATAGAAACTTTACTATGCGCATCCTGGTGGCC
ACTGATTTGATGGCACGCGGAGTGGACTCCCCGCATGCCAACCTGGTTAT
CAACATTGATCCACCACAGGATCATGTCACCTATTTGCACCGCATTGGAC
GAGCTGGTCGGTTTGGCTCCAAAGGCATAGCCATCACGTTTATTGCCTCC
AAGAAGGAGAGCCAGAGATTTAGGGAAATGTCAAAAAAAATCGCTACGGC
TTGGTCGGTTCTGGAGTTTCCCAAGGAGCCAATGCCCAATGAATTCAATT
TTTGGGATTTCGAAAAGTACAACTTTGATTATTACATTAAGGAAGAGAAT
CCGCTACAGGAAATGCCTATGCCTATTAAAGAAAATAGAAGTAAAGAAAA
TGTTGATGCTTCTTCAGTTGACTTGGAAAATCTTCAAAAGGATCAGGATG
GCAAAAGGAGAGATCCAGACAAACTACCAGTGGCCTTAGAAAATGTTGAA
ACCCAAAAAGAGTTGGAGCTCGAAAACTTACCAGAAAGTTCACATAATAA
TAAGAATCTTAGGGTCAAAGAGAAAGAAATTGTAAGGCAAGGAAAGCTTA
AAGAAACTAATTCCAAAGCTGGAGGTTCTAAAACGAACAAGACGGAGAGA
AGGAAAAAATCTAACACTCCATCAAAGTTACAGAAACAAATAACTGAAGT
GCAGCAAACACCAGAGATCACCGTAAATAAATACTATATGCAAGAAGACA
TACAACGAACAGCAGACGGCAAAGAGTATCATCCTGTTAATGGAGCGGGA
AACCACCAGGTTCCGTCAAAATCTAATCAAAAACCGGTGGAGTTTATATC
TCCCGAATTGACACCAACCCTAACACCATTGGAACTGACCCAGGAGCCGT
CTCCAACCACAGTGACACCACCTGCACCGCCAGCCAACTCGATTAACAAC
AAAACCTATTGCCTAGCTGCTCCAACGCAAACCAGTTCGATGACCATACA
GAACATGGTAATATCGAACACGGTGGACGATGCCAGTAGCATCAGTTCGG
ATAGCATGGTGGTATGTGGCTATCATAGCGATAGGTCCTACGACACATAC
TATGCAACCAGTGATGAGGAGGAGATCTGGAATAGATTAATGTCGAAACA
AAGGCGTCAGCTGAAGAGCAAGAGAGGCCATGGAAAACGGCGTGTGATAC
TATACAAGAAAGTATTTCCTAAACTAAAGGCGAATGTTAAACGCAAGCTT
AAAAAACGGATGAGCTCGTCATGCAGATCCAAAAAAGCACACCATTTGCG
AAAACGTCATGTATACAAAAATATATCACTTTTGCCACACATGAATTTGT
GTCATCTGCTTCAAAAATTTACAAATCAAGAGAGATTTTTGAAACGGCTC
CACAAATATGCAAAGAATCAATTCATTGACAATGCGAGGGTTGGCTTTTT
GCTGGATAAGCTCTATAAATCCATCCTGGAAATGTACTATAACAGTGCTA
AGGAGAGGAAGAAGCATTTTAAGGAAGCTATGAAGGAGTCCCTAAAATCC
ATTGATAACTACGAGAGCCAAGAGTCTTCGGAATCAGAGGAGGAGGAGGA
GGAGGAGAAGGATCTAAAGAACAAGTTAAGTGTTCATGTGACGAATCAGA
TGGACATACCACCAATGCCACAGGCCGCTGTTGAAATTGGTTCAGGAAGT
GAATCGGATACGGAGGACTCGCAGGAATACGGCGAAGGCGAAGAGATCAT
TGTGGACGATGAGGACGATGGCAGCGATGGCGGGCCAAATTCATCGAGTG
GTTTTGTAGAGAGTCAGGAGAGTGTTTCGTCTGGAATAGACACTTCCGTT
TACGAAACGGAATCTACGGGCGCATCTGGAAATAATTCAAGTGCATTCTT
TATTTCGGATGATGAATCAGATACTGAATCCTTAACAGATTCGGAAGCTG
GAAGCAATGTCAGCGCGACAGGATCAAGCTCACAGCGATCTTCAGTAGCG
AGCAGCACCTATGAATCTTCGGATGATGATTCTGTAACTGTAACCAATGT
CAGTTCAATGCAGAACGCTCAATCATTGTGGTTGCAGACTTTCAACATGC
AGTACCAATTCATTGCATCCCATGTGGCCAAGAATCTACAGAACTATTAC
TAAAAGCTTTCTAGACCAT
BS03612.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:21:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gem3-RB | 3087 | CG6539-PB | 1..3087 | 17..3103 | 15435 | 100 | Plus |
| Gem3-RA | 3087 | CG6539-PA | 1..3087 | 17..3103 | 15435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:21:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gem3-RB | 3963 | CG6539-RB | 72..3162 | 13..3103 | 15440 | 100 | Plus |
| Gem3-RA | 3423 | CG6539-RA | 72..3162 | 13..3103 | 15440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:21:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10459882..10462779 | 3103..206 | 14490 | 100 | Minus |
| 3L | 28110227 | 3L | 10462837..10463030 | 206..13 | 955 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:21:28 has no hits.
BS03612.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:47 Download gff for
BS03612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhh1-RA | 74..3158 | 17..3101 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:15 Download gff for
BS03612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gem3-RA | 76..3160 | 17..3101 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:59:44 Download gff for
BS03612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhh1-RA | 74..3158 | 17..3101 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:43 Download gff for
BS03612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gem3-RA | 76..3160 | 17..3101 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:43 Download gff for
BS03612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10459884..10462778 | 207..3101 | 100 | <- | Minus |
| 3L | 10462837..10463026 | 17..206 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:15 Download gff for
BS03612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10452984..10455878 | 207..3101 | 100 | <- | Minus |
| arm_3L | 10455937..10456126 | 17..206 | 100 | | Minus |
BS03612.3prime Sequence
777 bp (776 high quality bases) assembled on 2005-12-01
> BS03612.3prime
ATGGTCTAGAAAGCTTTTAGTAATAGTTCTGTAGATTCTTGGCCACATGG
GATGCAATGAATTGGTACTGCATGTTGAAAGTCTGCAACCACAATGATTG
AGCGTTCTGCATTGAACTGACATTGGTTACAGTTACAGAATCATCATCCG
AAGATTCATAGGTGCTGCTCGCTACTGAAGATCGCTGTGAGCTTGATCCT
GTCGCGCTGACATTGCTTCCAGCTTCCGAATCTGTTAAGGATTCAGTATC
TGATTCATCATCCGAAATAAAGAATGCACTTGAATTATTTCCAGATGCGC
CCGTAGATTCCGTTTCGTAAACGGAAGTGTCTATTCCAGACGAAACACTC
TCCTGACTCTCTACAAAACCACTCGATGAATTTGGCCCGCCATCGCTGCC
ATCGTCCTCATCGTCCACAATGATCTCTTCGCCTTCGCCGTATTCCTGCG
AGTCCTCCGTATCCGATTCACTTCCTGAACCAATTTCAACAGCGGCCTGT
GGCATTGGTGGTATGTCCATCTGATTCGTCACATGAACACTTAACTTGTT
CTTTAGATCCTTCTCCTCCTCCTCCTCCTCCTCTGATTCCGAAGACTCTT
GGCTCTCGTAGTTATCAATGGATTTTAGGGACTCCTTCATAGCTTCCTTA
AAATGCTTCTTCCTCTCCTTAGCACTGTTATAGTACATTTCCAGGATGGA
TTTATAGAGCTTATCCAGCAAAAAGCCAACCCTCGCATTGTCAATGAATT
GATTCTTTGCATATTTGTGGAGCCGTT
BS03612.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6539-PA | 3087 | Dhh1-RA | 2327..3087 | 777..17 | 3805 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:47:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gem3-RB | 3963 | CG6539-RB | 2402..3162 | 777..17 | 3805 | 100 | Minus |
| Gem3-RA | 3423 | CG6539-RA | 2402..3162 | 777..17 | 3805 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:47:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10459882..10460642 | 17..777 | 3805 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:47:17 has no hits.
BS03612.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:14 Download gff for
BS03612.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhh1-PA | 2327..3087 | 17..777 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:43:29 Download gff for
BS03612.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6539-PA | 2327..3087 | 17..777 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:08:31 Download gff for
BS03612.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gem3-RA | 2402..3168 | 11..777 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:12 Download gff for
BS03612.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gem3-RA | 2402..3168 | 11..777 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:12 Download gff for
BS03612.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10459876..10460642 | 11..777 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:08:31 Download gff for
BS03612.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10452976..10453742 | 11..777 | 99 | | Plus |
BS03612.5prime Sequence
911 bp (767 high quality bases) assembled on 2005-12-01
> BS03612.5prime
GAAGTTATCAGTCGACATGGAGCGCGAAATAGCGCACAGTTTAGCTGGCG
GCGAGGAACGAAGTAGCGATGTGGCACCTGGACAGGTTAAGACCTTCGAG
GAACTGCGTCTATACCGAAATCTGTTGAACGGATTGAAGCGCAACAATTT
CGTGACGCCAACGAAGATTCAGGCAGCTGCCATACCCATGGCACTGGCCA
AAATGGATCTAATAATACAATCGAAGAGTGGAACTGGCAAAACTCTAATC
TATGTTATAGCCGTCGTTCAGAGCTTTAATCCCAACATAAACCAACCGCA
TGCCATGATCGTGGTCCCAACTCGAGAGCTGGCCATTCAGGTGCAGGACA
CATTTTTCCATCTCTGCAAATCGTTTCGGGACTTTAAATGCTCTGCTTTC
ATCGGTGGCACCGATGTGGCCAAGGATCGCAAGCGAATGAATGAAAGTCG
AGTCATTATCGGTACACCGGGACGTTTGCTGCATCTGTATGAGAATAGAG
TATTCGATGTGTCCAAACTGCGACTGCTGGTGCTCGACGAGGCCGATCAA
CTTTATCAGACAAAGAGCCTGCAGCATACGGTCAGTAAACTCATTGAGGC
AATGCCCAAGAATCGGCAAATAATTGCCTGCAGTGCCACATACGATCAGA
ATTTGGATGAGCGTCTGGCCAAGGTCATGGACAAACCCATGCTTATATCG
AATTCCGAAAGGGCTACCGTTCTACTGGGCATTCGGCAGTTTGTCTACGA
ATTGCCACAGCAGAATAACAGTGTGGAGGAGATGCGTCTTACACTGCAGA
TTCTTGGCCAGATCTTTAATCAGCTGCCTTACGAACAGGCCATCATCTTT
GCTAGCTCACAAATGCGAGCGGATTCTTACAAGAACTATCTTACAGCCCG
TGGTATCGATT
BS03612.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6539-PA | 3087 | Dhh1-RA | 1..895 | 17..911 | 4425 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:39:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gem3-RB | 3963 | CG6539-RB | 72..970 | 13..911 | 4450 | 99.7 | Plus |
| Gem3-RA | 3423 | CG6539-RA | 72..970 | 13..911 | 4450 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:39:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10462074..10462779 | 911..206 | 3500 | 99.7 | Minus |
| 3L | 28110227 | 3L | 10462837..10463030 | 206..13 | 955 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:39:54 has no hits.
BS03612.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:15 Download gff for
BS03612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhh1-PA | 1..895 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:43:30 Download gff for
BS03612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6539-PA | 1..895 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:03:54 Download gff for
BS03612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gem3-RA | 64..970 | 2..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:34:23 Download gff for
BS03612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gem3-RA | 64..970 | 2..911 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:34:23 Download gff for
BS03612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10462074..10462778 | 207..911 | 99 | <- | Minus |
| 3L | 10462837..10463038 | 2..206 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:03:54 Download gff for
BS03612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10455937..10456138 | 2..206 | 97 | | Minus |
| arm_3L | 10455174..10455878 | 207..911 | 99 | <- | Minus |
BS03612.pep Sequence
Translation from 16 to 3102
> BS03612.pep
MEREIAHSLAGGEERSSDVAPGQVKTFEELRLYRNLLNGLKRNNFVTPTK
IQAAAIPMALAKMDLIIQSKSGTGKTLIYVIAVVQSFNPNINQPHAMIVV
PTRELAIQVQDTFFHLCKSFRDFKCSAFIGGTDVAKDRKRMNESRVIIGT
PGRLLHLYENRVFDVSKLRLLVLDEADQLYQTKSLQHTVSKLIEAMPKNR
QIIACSATYDQNLDERLAKVMDKPMLISNSERATVLLGIRQFVYELPQQN
NSVEEMRLKLQILGQIFNQLPYEQAIIFASSQMRADSYKNYLTASGIDCH
LISGAMEQSERLHVFEGYRNFTMRILVATDLMARGVDSPHANLVINIDPP
QDHVTYLHRIGRAGRFGSKGIAITFIASKKESQRFREMSKKIATAWSVLE
FPKEPMPNEFNFWDFEKYNFDYYIKEENPLQEMPMPIKENRSKENVDASS
VDLENLQKDQDGKRRDPDKLPVALENVETQKELELENLPESSHNNKNLRV
KEKEIVRQGKLKETNSKAGGSKTNKTERRKKSNTPSKLQKQITEVQQTPE
ITVNKYYMQEDIQRTADGKEYHPVNGAGNHQVPSKSNQKPVEFISPELTP
TLTPLELTQEPSPTTVTPPAPPANSINNKTYCLAAPTQTSSMTIQNMVIS
NTVDDASSISSDSMVVCGYHSDRSYDTYYATSDEEEIWNRLMSKQRRQLK
SKRGHGKRRVILYKKVFPKLKANVKRKLKKRMSSSCRSKKAHHLRKRHVY
KNISLLPHMNLCHLLQKFTNQERFLKRLHKYAKNQFIDNARVGFLLDKLY
KSILEMYYNSAKERKKHFKEAMKESLKSIDNYESQESSESEEEEEEEKDL
KNKLSVHVTNQMDIPPMPQAAVEIGSGSESDTEDSQEYGEGEEIIVDDED
DGSDGGPNSSSGFVESQESVSSGIDTSVYETESTGASGNNSSAFFISDDE
SDTESLTDSEAGSNVSATGSSSQRSSVASSTYESSDDDSVTVTNVSSMQN
AQSLWLQTFNMQYQFIASHVAKNLQNYY*
BS03612.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:56:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gem3-PB | 1028 | CG6539-PB | 1..1028 | 1..1028 | 5262 | 100 | Plus |
| Gem3-PA | 1028 | CG6539-PA | 1..1028 | 1..1028 | 5262 | 100 | Plus |
| me31B-PB | 428 | CG4916-PB | 17..368 | 15..376 | 551 | 38 | Plus |
| me31B-PA | 459 | CG4916-PA | 48..399 | 15..376 | 551 | 38 | Plus |
| Hel25E-PB | 424 | CG7269-PB | 43..414 | 27..404 | 544 | 31.2 | Plus |
