Clone Sequence Records
BS03613.complete Sequence
2471 bp assembled on 2009-12-07
GenBank Submission: KX799462
> BS03613.complete
GAAGTTATCAGTCGACATGTTGAAGAACAAGTCCATGAAAACCTCAAAGT
TATATGTTATTAAGAGAGATGGCAGGCAGGAGGAGGTGCACTTCGATAAA
ATAACCTCAAGAATCCAGAAGCTTTGCTACAACTTGAACATGGATTTTGT
TGATCCTGTTACTATCACCCTGCAAGTCATCAATGGTCTGTACTGCGGCG
TGACCACCCAGGAGCTGGACAACTTGGCAGCAGAAATCGCAGCTGGATTA
ACATGCAATCATCCCGACTACGCCATCCTGGCTGCTCGCATTGCAGTGTC
CAATTTGCACAAGGAAACCAAGAAGGCTTTTTCTGACGTCTTCGAGGATC
TGTATAATCATGTAAACAAGGAGACGAATCAAAAAGTGCCCTTGGTATCC
GAGTTTCACTACAATGTGGTTAAGAAGAACGCCACACGGCTGAACTCGTC
CATAATCTATGATCGTGACTTTGGCTATAACTATTTTGGCTTCAAGACCC
TGGAGCGTTCCTATCTGCTCAAAAGAAACGGAAAGATCGCAGAGCGACCG
CAGCATATGCTGATGCGCGTGGCGATCGGAATCCATGGAGAGGATATCGA
TGCGGCCGTGGAAACTTATAATCTTCTATCGGAGCGCTACTTCACGCATG
CATCGCCCACACTGTTTGCCGCTGCCACAAACCGGCCGCAGTTGTCGTCG
TGTTTCCTTCTGACCATGACAGCCGACTCCATCGAGGGCATTTTCAAGTC
TGTGGAGCAGTGCGCCATGATCTCCAAGTCCGCCGGTGGCATTGGACTTA
ACGTACACTGCATTCGTGCAAAGGGCACATCGATTTGCGGCACAAATGGA
ACTTCGAATGGGTTGGTTCCAATGCTGAGGGTTTTCAATAATGTGGCACG
TTATGTGGATCAGGGAGGCGGCAAGCGTCCCGGTGCCTTTGCCATTTACC
TGGAACCCTGGCACTCGGATGTCTTTGAGTTCCTGGAACTGAAGAAGAAC
ACAGGCAAAGAAGAGAATCGCGCACGCGATCTGTTTTACGCCCTGTGGAT
ACCCGATCTCTTCATGAAACGCGTGGAGGCCAACGGTGATTGGTCGCTCA
TGTGCCCCCACAAGTGTCCTGGTCTCCACGACGTGTGGGGCGATGAATTC
GAAAAGCTGTACGAGAAATACGAGCAAGAGGGTCGGGCCAACCGAACGGT
TAAGGCTCAATCCCTGTGGTTTGCCATCATTGAGGCGCAAGTGGAGACCG
GAAATCCGTACATGCTGTTCAAGGACGCTTGCAACAGGAAGAGCAACCAG
CAGAATGTGGGCACAATCAAGTGCAGCAACTTGTGTACGGAAATCGTAGA
ATACTCCGCACCGGATGAGATAGCAGTCTGCAACTTGGCCTCCATTGCCC
TCAACATGTTTGTAACGCCGGAGAAGACGTATGATTTCAAGAAGCTCAAG
GAAGTCACCAAGATAGTTACCAAAAATCTAAACAAGATAATTGATATCAA
CTATTATCCTCTGCCAGAGGCAAGGAAATCCAATTTGAGGCACCGTCCCG
TGGGCATTGGTATTCAGGGATTCGCTGATGCTTTGATTCTCATGCGTTTC
CCGTACGAAAGCGAAGAAGCCGGTCTCTTGAATCAGCAGATATTCGAAAC
GATTTACTATGGCGCCTTGGAAGCCAGCTGCGAACTGGCCCAGACCGAAG
GTCCATACGAAACCTACGAGGGCAGCCCGGTAAGCAAGGGAATTTTGCAA
TACGACATGTGGGACAAGGTGCCAACGAACCTGTGGGACTGGCAGAAATT
GAAGGAGTCCATTAGGATGCACGGTGTCCGGAACTCTCTGCTTGTTGCTC
CCATGCCCACGGCATCTACAGCTCAGATAATGGGCAATAATGAATCCTTC
GAGCCCTACACCACAAACATATACACCCGGCGAGTTCTGTCCGGCGAATT
CCAGGTGGTCAACCATCATTTGTTGCGCGACCTAACCGAGCTGGACTTGT
GGGACGACGACATGAAGAACCAGATCATATCCAGCAGAGGATCGATCCAA
AACATTGAGACCATACCCCCGAAGGTGCGCGATCTGTACAAGACGGTGTG
GGAAATCTCGGTCAAGTCCACGATTAAAATGGCCGCCGATCGTGGTGCGT
TCATAGATCAGAGTCAGTCGTTCAACATACATGTGGCCGAGCCAAACTAT
GGAAAGCTGACCTCCATACATTTTTATTCCTGGAAAGCTGGTCTCAAAAC
CGGAATGTACTATCTGCGCACCAAGCCAGCTGCGAATGCCATTCAGTTCA
CCGTGAACAAGAAGCAGGGTGCAGTGAGCATGAATGGCCAGAATGGCACC
GCCGAGGGAAGCCCCCAAAAGTACGAAGAGGATAGGGAACGGAAAATGGC
CGATATGGTTTGTTCGCTCGAAAATAAGGACGCCTGCATGTCCTGCGGTT
CTTAAAAGCTTTCTAGACCAT
BS03613.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:21:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RnrL-RA | 2439 | CG5371-PA | 1..2439 | 17..2455 | 12195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:21:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RnrL-RA | 2577 | CG5371-RA | 58..2512 | 9..2463 | 12230 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:21:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10325091..10327219 | 2463..335 | 10630 | 100 | Minus |
| 2L | 23513712 | 2L | 10327277..10327454 | 335..158 | 890 | 100 | Minus |
| 2L | 23513712 | 2L | 10327685..10327777 | 159..67 | 465 | 100 | Minus |
| 2L | 23513712 | 2L | 10327823..10327886 | 72..9 | 275 | 95.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:21:47 has no hits.
BS03613.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:52 Download gff for
BS03613.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrL-RA | 114..2545 | 22..2453 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:24 Download gff for
BS03613.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrL-RA | 71..2502 | 22..2453 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:53:38 Download gff for
BS03613.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrL-RA | 114..2545 | 22..2453 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:50 Download gff for
BS03613.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrL-RA | 71..2502 | 22..2453 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:50 Download gff for
BS03613.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10325101..10327218 | 336..2453 | 100 | <- | Minus |
| 2L | 10327277..10327454 | 158..335 | 100 | <- | Minus |
| 2L | 10327687..10327775 | 69..157 | 100 | <- | Minus |
| 2L | 10327827..10327873 | 22..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:24 Download gff for
BS03613.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10325101..10327218 | 336..2453 | 100 | <- | Minus |
| arm_2L | 10327277..10327454 | 158..335 | 100 | <- | Minus |
| arm_2L | 10327687..10327775 | 69..157 | 100 | <- | Minus |
| arm_2L | 10327827..10327873 | 22..68 | 100 | | Minus |
BS03613.3prime Sequence
923 bp (866 high quality bases) assembled on 2005-12-01
> BS03613.3prime
ATGGTCTAGAAAGCTTTTAAGAACCGCAGGACATGCAGGCGTCCTTATTT
TCGAGCGAACAAACCATATCGGCCATTTTCCGTTCCCTATCCTCTTCGTA
CTTTTGGGGGCTTCCCTCGGCGGTGCCATTCTGGCCATTCATGCTCACTG
CACCCTGCTTCTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTG
GTGCGCAGATAGTACATTCCGGTTTTGAGACCAGCTTTCCAGGAATAAAA
ATGTATGGAGGTCAGCTTTCCATAGTTTGGCTCGGCCACATGTATGTTGA
ACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGCCATTTTAATC
GTGGACTTGACCGAGATTTCCCACACCGTCTTGTACAGATCGCGCACCTT
CGGGGGTATGGTCTCAATGTTTTGGATCGATCCTCTGCTGGATATGATCT
GGTTCTTCATGTCGTCGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAAC
AAATGATGGTTGACCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTA
TATGTTTGTGGTGTAGGGCTCGAAGGATTCATTATTGCCCATTATCTGAG
CTGTAGATGCCGTGGGCATGGGAGCAACAAGCAGAGAGTTCCGGACACCG
TGCATCCTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGTTCGTTGG
CACCTTGTCCCACATGTCGTATTGCAAAATTCCCTTGCTTACCGGGCTGC
CCTCGTAGGTTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCT
TCCAAGGCGCCATAGTAAATCGTTTCGAATATCTGCTGATTCAAGAGACC
GGCTTCTTCGCTTTCGTACGGGAAACGCATGAGAATCAAAGCATCAGCGA
ATCCCTGAAATACCATGCCCACG
BS03613.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5371-PA | 2439 | RnrL-RA | 1547..2439 | 909..17 | 4465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:57:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RnrL-RA | 2577 | CG5371-RA | 1598..2512 | 923..9 | 4515 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:56:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10325091..10326005 | 9..923 | 4500 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-01-31 14:57:00 has no hits.
BS03613.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:16 Download gff for
BS03613.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrL-PA | 1533..2439 | 17..923 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:43:31 Download gff for
BS03613.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5371-PA | 1533..2439 | 17..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:22:31 Download gff for
BS03613.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrL-RA | 1598..2516 | 1..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:39:22 Download gff for
BS03613.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrL-RA | 1598..2516 | 1..923 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:39:22 Download gff for
BS03613.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10325087..10326005 | 1..923 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:22:31 Download gff for
BS03613.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10325087..10326005 | 1..923 | 99 | | Plus |
BS03613.5prime Sequence
881 bp (864 high quality bases) assembled on 2005-12-01
> BS03613.5prime
GAAGTTATCAGTCGACATGTTGAAGAACAAGTCCATGAAAACCTCAAAGT
TATATGTTATTAAGAGAGATGGCAGGCAGGAGGAGGTGCACTTCGATAAA
ATAACCTCAAGAATCCAGAAGCTTTGCTACAACTTGAACATGGATTTTGT
TGATCCTGTTACTATCACCCTGCAAGTCATCAATGGTCTGTACTGCGGCG
TGACCACCCAGGAGCTGGACAACTTGGCAGCAGAAATCGCAGCTGGATTA
ACATGCAATCATCCCGACTACGCCATCCTGGCTGCTCGCATTGCAGTGTC
CAATTTGCACAAGGAAACCAAGAAGGCTTTTTCTGACGTCTTCGAGGATC
TGTATAATCATGTAAACAAGGAGACGAATCAAAAAGTGCCCTTGGTATCC
GAGTTTCACTACAATGTGGTTAAGAAGAACGCCACACGGCTGAACTCGTC
CATAATCTATGATCGTGACTTTGGCTATAACTATTTTGGCTTCAAGACCC
TGGAGCGTTCCTATCTGCTCAAAAGAAACGGAAAGATCGCAGAGCGACCG
CAGCATATGCTGATGCGCGTGGCGATCGGAATCCATGGAGAGGATATCGA
TGCGGCCGTGGAAACTTATAATCTTCTATCGGAGCGCTACTTCACGCATG
CATCGCCCACACTGTTTGCCGCTGCCACAAACCGGCCGCAGTTGTCGTCG
TGTTTCCTTCTGACCATGACAGCCGACTCCATCGAGGGCATTTTCAAGTC
TGTGGAGCAGTGCGCCATGATCTCCAAGTCCGCCGGTGGCATTGGACTTA
ACGTACACTGCATTCGTGCAAAGGGCACATCGATTTGCGGCACAAATGGA
ACTTCGAATGGGTTGGGTCCGATGCTGAGGG
BS03613.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5371-PA | 2439 | RnrL-RA | 1..865 | 17..881 | 4275 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:13:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RnrL-RA | 2577 | CG5371-RA | 58..930 | 9..881 | 4305 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:12:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10326673..10327219 | 881..335 | 2705 | 99.6 | Minus |
| 2L | 23513712 | 2L | 10327277..10327454 | 335..158 | 890 | 100 | Minus |
| 2L | 23513712 | 2L | 10327685..10327777 | 159..67 | 465 | 100 | Minus |
| 2L | 23513712 | 2L | 10327823..10327886 | 72..9 | 275 | 95.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:12:57 has no hits.
BS03613.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:18 Download gff for
BS03613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrL-PA | 1..865 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:43:32 Download gff for
BS03613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5371-PA | 1..865 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:46:14 Download gff for
BS03613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrL-RA | 49..930 | 1..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:03:52 Download gff for
BS03613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrL-RA | 49..930 | 1..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:03:52 Download gff for
BS03613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10326673..10327218 | 336..881 | 99 | <- | Minus |
| 2L | 10327277..10327454 | 158..335 | 100 | <- | Minus |
| 2L | 10327687..10327775 | 69..157 | 100 | <- | Minus |
| 2L | 10327827..10327895 | 1..68 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:46:14 Download gff for
BS03613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10326673..10327218 | 336..881 | 99 | <- | Minus |
| arm_2L | 10327277..10327454 | 158..335 | 100 | <- | Minus |
| arm_2L | 10327687..10327775 | 69..157 | 100 | <- | Minus |
| arm_2L | 10327827..10327895 | 1..68 | 92 | | Minus |
BS03613.pep Sequence
Translation from 16 to 2454
> BS03613.pep
MLKNKSMKTSKLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTI
TLQVINGLYCGVTTQELDNLAAEIAAGLTCNHPDYAILAARIAVSNLHKE
TKKAFSDVFEDLYNHVNKETNQKVPLVSEFHYNVVKKNATRLNSSIIYDR
DFGYNYFGFKTLERSYLLKRNGKIAERPQHMLMRVAIGIHGEDIDAAVET
YNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMTADSIEGIFKSVEQCA
MISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARYVDQG
GGKRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFM
KRVEANGDWSLMCPHKCPGLHDVWGDEFEKLYEKYEQEGRANRTVKAQSL
WFAIIEAQVETGNPYMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSAPD
EIAVCNLASIALNMFVTPEKTYDFKKLKEVTKIVTKNLNKIIDINYYPLP
EARKSNLRHRPVGIGIQGFADALILMRFPYESEEAGLLNQQIFETIYYGA
LEASCELAQTEGPYETYEGSPVSKGILQYDMWDKVPTNLWDWQKLKESIR
MHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEFQVVNH
HLLRDLTELDLWDDDMKNQIISSRGSIQNIETIPPKVRDLYKTVWEISVK
STIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYL
RTKPAANAIQFTVNKKQGAVSMNGQNGTAEGSPQKYEEDRERKMADMVCS
LENKDACMSCGS*
BS03613.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:57:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RnrL-PA | 812 | CG5371-PA | 1..812 | 1..812 | 4278 | 100 | Plus |
