Clone BS03614 Report

Search the DGRC for BS03614

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:36
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptKdelR-RA
Protein status:BS03614.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03614.3prime Sequence

669 bp (668 high quality bases) assembled on 2005-12-01

> BS03614.3prime
ATGGTCTAGAAAGCTTTTATGCCGGCAGCTGGAGCTTCTTGCCCTTAAGA
ACTTTGGTAATGTATAAGTAGAAGAAGTCGCAGTACAAGACGGTCTGGAC
AACTCCGGCGAAGATCGCGATAAGGTCGTAGTGCGACTCGACCATGTACC
GGTAGACCCAGTTGAGCAAGTAGAGTGCACGGTACGATCCCAGGGCGAAG
AGGTAGTGGCTGGTGATGGACTCGGCCTCGCCGGTTCTGCTCACTAGGAA
CAGCTGCGGCAGAATGGCCACCGATTCCAAATAGATCGAGAATGTCCACA
GCACTTCCATCACGGTAAACTCATGATTGATCACCAGCGAGAGCAGGGCG
CACGGCACCAGCAGGAATTCGATGCGGAACGAATCGTGATTGTGGTCATA
GGTGGCCTTAAACTTCACGTACATCAAATACACGGTGGCACCGGACGTGG
CCAGGAACAACACCTTCATCACCGAGTTGTACAGGCTCACGTAGGTGGTG
AACAGATCCAGGTAGCGCGTCAGATAGACCACGGCGAACAGGATCTGCGA
CTTGCCCGATATTCCGGCGCACGAGCGGGTCTTCCATATCTTCAGCAGCA
GTATTATGATGGCAAACACATGCGACAGATCCCCAGCAAAGCGAAAGATA
TTCATGTCGACTGATAACT

BS03614.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5183-PB 639 KdelR-RB 1..639 655..17 3195 100 Minus
CG5183-PC 639 KdelR-RC 1..639 655..17 3195 100 Minus
CG5183-PA 639 KdelR-RA 1..639 655..17 3195 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:58:11
Subject Length Description Subject Range Query Range Score Percent Strand
KdelR-RC 1679 CG5183-RC 218..856 655..17 3195 100 Minus
KdelR-RB 1273 CG5183-RB 285..923 655..17 3195 100 Minus
KdelR-RA 1201 CG5183-RA 213..851 655..17 3195 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:58:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10427171..10427809 655..17 3195 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:58:09 has no hits.

BS03614.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:19 Download gff for BS03614.3prime
Subject Subject Range Query Range Percent Splice Strand
KdelR-PC 1..639 17..655 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:43:34 Download gff for BS03614.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5183-PA 1..639 17..655 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:10:37 Download gff for BS03614.3prime
Subject Subject Range Query Range Percent Splice Strand
KdelR-RB 274..925 13..665 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:32:45 Download gff for BS03614.3prime
Subject Subject Range Query Range Percent Splice Strand
KdelR-RA 202..853 13..665 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:32:45 Download gff for BS03614.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10427160..10427811 13..665 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:10:37 Download gff for BS03614.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10427160..10427811 13..665 99   Minus

BS03614.5prime Sequence

669 bp (668 high quality bases) assembled on 2005-11-29

> BS03614.5prime
GAAGTTATCAGTCGACATGAATATCTTTCGCTTTGCTGGGGATCTGTCGC
ATGTGTTTGCCATCATAATACTGCTGCTGAAGATATGGAAGACCCGCTCG
TGCGCCGGAATATCGGGCAAGTCGCAGATCCTGTTCGCCGTGGTCTATCT
GACGCGCTACCTGGATCTGTTCACCACCTACGTGAGCCTGTACAACTCGG
TGATGAAGGTGTTGTTCCTGGCCACGTCCGGTGCCACCGTGTATTTGATG
TACGTGAAGTTTAAGGCCACCTATGACCACAATCACGATTCGTTCCGCAT
CGAATTCCTGCTGGTGCCGTGCGCCCTGCTCTCGCTGGTGATCAATCATG
AGTTTACCGTGATGGAAGTGCTGTGGACATTCTCGATCTATTTGGAATCG
GTGGCCATTCTGCCGCAGCTGTTCCTAGTGAGCAGAACCGGCGAGGCCGA
GTCCATCACCAGCCACTACCTCTTCGCCCTGGGATCGTACCGTGCACTCT
ACTTGCTCAACTGGGTCTACCGGTACATGGTCGAGTCGCACTACGACCTT
ATCGCGATCTTCGCCGGAGTTGTCCAGACCGTCTTGTACTGCGACTTCTT
CTACTTATACATTACCAAAGTTCTTAAGGGCAAGAAGCTCCAGCTGCCGG
CATAAAAGCTTTCTAGACC

BS03614.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5183-PB 639 KdelR-RB 1..639 17..655 3195 100 Plus
CG5183-PC 639 KdelR-RC 1..639 17..655 3195 100 Plus
CG5183-PA 639 KdelR-RA 1..639 17..655 3195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:35:42
Subject Length Description Subject Range Query Range Score Percent Strand
KdelR-RC 1679 CG5183-RC 218..856 17..655 3195 100 Plus
KdelR-RB 1273 CG5183-RB 285..923 17..655 3195 100 Plus
KdelR-RA 1201 CG5183-RA 213..851 17..655 3195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:35:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10427171..10427809 17..655 3195 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:35:38 has no hits.

BS03614.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:20 Download gff for BS03614.5prime
Subject Subject Range Query Range Percent Splice Strand
KdelR-PC 1..639 17..655 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:43:35 Download gff for BS03614.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5183-PA 1..639 17..655 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:38:09 Download gff for BS03614.5prime
Subject Subject Range Query Range Percent Splice Strand
KdelR-RB 274..925 7..659 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:07:55 Download gff for BS03614.5prime
Subject Subject Range Query Range Percent Splice Strand
KdelR-RA 202..853 7..659 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:07:55 Download gff for BS03614.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10427160..10427811 7..659 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:38:09 Download gff for BS03614.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10427160..10427811 7..659 99   Plus

BS03614.complete Sequence

671 bp (671 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634723

> BS03614.complete
GAAGTTATCAGTCGACATGAATATCTTTCGCTTTGCTGGGGATCTGTCGC
ATGTGTTTGCCATCATAATACTGCTGCTGAAGATATGGAAGACCCGCTCG
TGCGCCGGAATATCGGGCAAGTCGCAGATCCTGTTCGCCGTGGTCTATCT
GACGCGCTACCTGGATCTGTTCACCACCTACGTGAGCCTGTACAACTCGG
TGATGAAGGTGTTGTTCCTGGCCACGTCCGGTGCCACCGTGTATTTGATG
TACGTGAAGTTTAAGGCCACCTATGACCACAATCACGATTCGTTCCGCAT
CGAATTCCTGCTGGTGCCGTGCGCCCTGCTCTCGCTGGTGATCAATCATG
AGTTTACCGTGATGGAAGTGCTGTGGACATTCTCGATCTATTTGGAATCG
GTGGCCATTCTGCCGCAGCTGTTCCTAGTGAGCAGAACCGGCGAGGCCGA
GTCCATCACCAGCCACTACCTCTTCGCCCTGGGATCGTACCGTGCACTCT
ACTTGCTCAACTGGGTCTACCGGTACATGGTCGAGTCGCACTACGACCTT
ATCGCGATCTTCGCCGGAGTTGTCCAGACCGTCTTGTACTGCGACTTCTT
CTACTTATACATTACCAAAGTTCTTAAGGGCAAGAAGCTCCAGCTGCCGG
CATAAAAGCTTTCTAGACCAT

BS03614.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
KdelR-RC 639 CG5183-PC 1..639 17..655 3195 100 Plus
KdelR-RB 639 CG5183-PB 1..639 17..655 3195 100 Plus
KdelR-RA 639 CG5183-PA 1..639 17..655 3195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:35:18
Subject Length Description Subject Range Query Range Score Percent Strand
KdelR-RC 1679 CG5183-RC 218..856 17..655 3195 100 Plus
KdelR-RB 1273 CG5183-RB 285..923 17..655 3195 100 Plus
KdelR-RA 1201 CG5183-RA 213..851 17..655 3195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:35:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10427171..10427809 17..655 3195 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:35:16 has no hits.

BS03614.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:58 Download gff for BS03614.complete
Subject Subject Range Query Range Percent Splice Strand
KdelR-RA 1..639 17..655 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:53 Download gff for BS03614.complete
Subject Subject Range Query Range Percent Splice Strand
KdelR-RA 222..873 7..659 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:21 Download gff for BS03614.complete
Subject Subject Range Query Range Percent Splice Strand
KdelR-RB 285..921 17..653 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:58 Download gff for BS03614.complete
Subject Subject Range Query Range Percent Splice Strand
KdelR-RA 222..873 7..659 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:32 Download gff for BS03614.complete
Subject Subject Range Query Range Percent Splice Strand
KdelR-RA 213..849 17..653 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:32 Download gff for BS03614.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10427171..10427807 17..653 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:21 Download gff for BS03614.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10427171..10427807 17..653 100   Plus

BS03614.pep Sequence

Translation from 16 to 654

> BS03614.pep
MNIFRFAGDLSHVFAIIILLLKIWKTRSCAGISGKSQILFAVVYLTRYLD
LFTTYVSLYNSVMKVLFLATSGATVYLMYVKFKATYDHNHDSFRIEFLLV
PCALLSLVINHEFTVMEVLWTFSIYLESVAILPQLFLVSRTGEAESITSH
YLFALGSYRALYLLNWVYRYMVESHYDLIAIFAGVVQTVLYCDFFYLYIT
KVLKGKKLQLPA*

BS03614.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:05
Subject Length Description Subject Range Query Range Score Percent Strand
KdelR-PC 212 CG5183-PC 1..212 1..212 1084 100 Plus
KdelR-PB 212 CG5183-PB 1..212 1..212 1084 100 Plus
KdelR-PA 212 CG5183-PA 1..212 1..212 1084 100 Plus