Clone BS03615 Report

Search the DGRC for BS03615

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:36
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptRfC38-RA
Protein status:BS03615.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03615.3prime Sequence

955 bp (792 high quality bases) assembled on 2005-12-01

> BS03615.3prime
ATGGTCTAGAAAGCTTTTAAAAATCATCCGTCATGTCCAGCTCAGAAAGG
AACTTTTTATAGATGTTCATAAACTGAGCGACGAACGCTTCAAGATGAAA
AATGTGCTTGGCGCCGGACTGCATCCGGTGCTCGTACTCGGTGGCGAACT
CGAGCGTCTTTGCCTTGATGGACATATCACAATTGTTAACCAGCTGTTCG
ACCAGGCCGCGGAATATGAGATTAGGTGGAACGCCTTGCGTGAGTAGCTC
GTACAGGCGTTCGCGGATCTTCTCCAGTTTGGCAGGCGTTTGCTCACTGA
TAATCTGAGATGCTGTCTCACGCAGGAACACCTGCCAGTCCAGGTCGGGA
ATCTCCTGATTGGCGGTAAACGGCGCCTTGGCCACCTTGGCGGCCTCCAG
CATCAAAAGTGCTCGCCTGAGATTGCGCTCCGACTTGTCCACAACCCGTT
TGGCCAGCTCCACGGGCAGTGCGAGTCCCTCCCGCTTGCAAGTGTTCTGC
AAGATGGACACGATCTCCGTTTCGTTGGGAGCCGCCACCCGTATGCCCAG
GCAACGCGACCGTATGGCCGGAATGATCCGAGATGTGGAGTTCACCGATA
TGATTATCCGGCACGTGGCCACATATTTCTCCATCGTACGGCGCAGGGCG
TGCTGGGCATCCTTGGTGAGTTCGTCGCCCTCCGAAATTACAATCACCTT
GAATTCCCGTTGGCCACTAATCTCAATTTGATGCGTCTGGGCCACCTGCT
TGATGAGATCGATCACCACCGTGCGGTCGTACATGCCAGCGTCGGAGGGA
TTCACCTCCAAGTGGTAGTTGCTGCTGACCGTCATCACCTCTACCTTCCG
ATTGGATGGCGTGGTGAATGTCATGGTCTCGCTCCTCAACCGCTCAACGC
CGGATCCGTACATCTCCCGTAGCANGCACATGATGCGTGTCTTCTTGCCA
GCACC

BS03615.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG6258-PA 1071 RfC38-RA 133..1071 955..17 4676 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:11:08
Subject Length Description Subject Range Query Range Score Percent Strand
RfC38-RB 1604 CG6258-RB 607..1546 955..16 4689 99.9 Minus
RfC38-RA 1276 CG6258-RA 279..1218 955..16 4689 99.9 Minus
Nup160-RA 4747 CG4738-RA 4402..4747 16..361 1730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:11:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11128990..11129929 16..955 4689 99.9 Plus
Blast to na_te.dros performed on 2015-01-30 16:11:05 has no hits.

BS03615.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:21 Download gff for BS03615.3prime
Subject Subject Range Query Range Percent Splice Strand
RfC38-PA 133..1071 17..955 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:43:37 Download gff for BS03615.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6258-PA 133..1071 17..955 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:22:22 Download gff for BS03615.3prime
Subject Subject Range Query Range Percent Splice Strand
RfC38-RA 279..1228 4..955 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:49:16 Download gff for BS03615.3prime
Subject Subject Range Query Range Percent Splice Strand
RfC38-RA 279..1228 4..955 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:49:16 Download gff for BS03615.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 11128980..11129929 4..955 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:22:22 Download gff for BS03615.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11128980..11129929 4..955 99   Plus

BS03615.5prime Sequence

893 bp (746 high quality bases) assembled on 2005-12-01

> BS03615.5prime
GAAGTTATCAGTCGACATGGCACTTTGGGTGGATAAATACCGTCCGCGGG
AGCTGTCCAAATTGGACTTCCACAAGGATCAAGCGGAGAACCTACGCAAC
CTTTGCAAGCAGAGCGATTTTCCTCATCTGATGTTCTACGGACCCTCGGG
TGCTGGCAAGAAGACACGCATCATGTGCCTGCTACGGGAGATGTACGGAT
CCGGCGTTGAGCGGTTGAGGAGCGAGACCATGACATTCACCACGCCATCC
AATCGGAAGGTAGAGGTGATGACGGTCAGCAGCAACTACCACTTGGAGGT
GAATCCCTCCGACGCTGGCATGTACGACCGCACGGTGGTGATCGATCTCA
TCAAGCAGGTGGCCCAGACGCATCAAATTGAGATTAGTGGCCAACGGGAA
TTCAAGGTGATTGTAATTTCGGAGGGCGACGAACTCACCAAGGATGCCCA
GCACGCCCTGCGCCGTACGATGGAGAAATATGTGGCCACGTGCCGGATAA
TCATATCGGTGAACTCCACATCTCGGATCATTCCGGCCATACGGTCGCGT
TGCCTGGGCATACGGGTGGCGGCTCCCAACGAAACGGAGATCGTGTCCAT
CTTGCAGAACACTTGCAAGCGGGAGGGACTCGCACTGCCCGTGGAGCTGG
CCAAACGGGTTGTGGACAAGTCGGAGCGCAATCTCAGGCGAGCACTTTTG
ATGCTGGAGGCCGCCAAGGTGGCCAAGGCGCCGTTTACCGCCAATCAGGA
GATTCCCGACCTGGACTGGCAGGTGTTCCTGCGTGAGACAGCATCTCAGA
TTATCAGTGAGCAAACGCCTGCCAAACTGGAGAAGATCCGCGAACGCCTG
TACGAGCTACTCACGCAAAGCGTTCCACCTAATCTCATATTCC

BS03615.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG6258-PA 1071 RfC38-RA 1..877 17..893 4360 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:48:10
Subject Length Description Subject Range Query Range Score Percent Strand
RfC38-RB 1604 CG6258-RB 471..1351 13..893 4375 99.8 Plus
RfC38-RA 1276 CG6258-RA 143..1023 13..893 4375 99.8 Plus
Nup160-RA 4747 CG4738-RA 4597..4747 893..743 740 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:48:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11129185..11130003 893..75 4080 99.9 Minus
2L 23513712 2L 11130111..11130175 77..13 310 98.5 Minus
Blast to na_te.dros performed on 2015-02-12 05:48:06 has no hits.

BS03615.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:22 Download gff for BS03615.5prime
Subject Subject Range Query Range Percent Splice Strand
RfC38-PA 1..877 17..893 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:43:38 Download gff for BS03615.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6258-PA 1..877 17..893 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:30:55 Download gff for BS03615.5prime
Subject Subject Range Query Range Percent Splice Strand
RfC38-RA 138..1023 4..893 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:50:50 Download gff for BS03615.5prime
Subject Subject Range Query Range Percent Splice Strand
RfC38-RA 138..1023 4..893 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:50:50 Download gff for BS03615.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 11129185..11130001 77..893 99 <- Minus
2L 11130112..11130180 4..76 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:30:55 Download gff for BS03615.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11129185..11130001 77..893 99 <- Minus
arm_2L 11130112..11130180 4..76 93   Minus

BS03615.complete Sequence

1103 bp (1103 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634724

> BS03615.complete
GAAGTTATCAGTCGACATGGCACTTTGGGTGGATAAATACCGTCCGCGGG
AGCTGTCCAAATTGGACTTCCACAAGGATCAAGCGGAGAACCTACGCAAC
CTTTGCAAGCAGAGCGATTTTCCTCATCTGATGTTCTACGGACCCTCGGG
TGCTGGCAAGAAGACACGCATCATGTGCCTGCTACGGGAGATGTACGGAT
CCGGCGTTGAGCGGTTGAGGAGCGAGACCATGACATTCACCACGCCATCC
AATCGGAAGGTAGAGGTGATGACGGTCAGCAGCAACTACCACTTGGAGGT
GAATCCCTCCGACGCTGGCATGTACGACCGCACGGTGGTGATCGATCTCA
TCAAGCAGGTGGCCCAGACGCATCAAATTGAGATTAGTGGCCAACGGGAA
TTCAAGGTGATTGTAATTTCGGAGGGCGACGAACTCACCAAGGATGCCCA
GCACGCCCTGCGCCGTACGATGGAGAAATATGTGGCCACGTGCCGGATAA
TCATATCGGTGAACTCCACATCTCGGATCATTCCGGCCATACGGTCGCGT
TGCCTGGGCATACGGGTGGCGGCTCCCAACGAAACGGAGATCGTGTCCAT
CTTGCAGAACACTTGCAAGCGGGAGGGACTCGCACTGCCCGTGGAGCTGG
CCAAACGGGTTGTGGACAAGTCGGAGCGCAATCTCAGGCGAGCACTTTTG
ATGCTGGAGGCCGCCAAGGTGGCCAAGGCGCCGTTTACCGCCAATCAGGA
GATTCCCGACCTGGACTGGCAGGTGTTCCTGCGTGAGACAGCATCTCAGA
TTATCAGTGAGCAAACGCCTGCCAAACTGGAGAAGATCCGCGAACGCCTG
TACGAGCTACTCACGCAAGGCGTTCCACCTAATCTCATATTCCGCGGCCT
GGTCGAACAGCTGGTTAACAATTGTGATATGTCCATCAAGGCAAAGACGC
TCGAGTTCGCCACCGAGTACGAGCACCGGATGCAGTCCGGCGCCAAGCAC
ATTTTTCATCTTGAAGCGTTCGTCGCTCAGTTTATGAACATCTATAAAAA
GTTCCTTTCTGAGCTGGACATGACGGATGATTTTTAAAAGCTTTCTAGAC
CAT

BS03615.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
RfC38-RB 1071 CG6258-PB 1..1071 17..1087 5355 100 Plus
RfC38-RA 1071 CG6258-PA 1..1071 17..1087 5355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
RfC38-RB 1604 CG6258-RB 471..1546 13..1088 5365 99.9 Plus
RfC38-RA 1276 CG6258-RA 143..1218 13..1088 5365 99.9 Plus
Nup160-RA 4747 CG4738-RA 4402..4747 1088..743 1730 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:56:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11128990..11130003 1088..75 5070 100 Minus
2L 23513712 2L 11130111..11130175 77..13 310 98.5 Minus
Blast to na_te.dros performed on 2014-11-27 19:56:09 has no hits.

BS03615.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:29:05 Download gff for BS03615.complete
Subject Subject Range Query Range Percent Splice Strand
RfC38-RA 1..1071 17..1087 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:12:21 Download gff for BS03615.complete
Subject Subject Range Query Range Percent Splice Strand
RfC38-RA 466..1556 4..1100 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:39 Download gff for BS03615.complete
Subject Subject Range Query Range Percent Splice Strand
RfC38-RA 147..1215 17..1085 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:29:05 Download gff for BS03615.complete
Subject Subject Range Query Range Percent Splice Strand
RfC38-RA 466..1556 4..1100 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:09 Download gff for BS03615.complete
Subject Subject Range Query Range Percent Splice Strand
RfC38-RA 147..1215 17..1085 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:09 Download gff for BS03615.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11128993..11130001 77..1085 100 <- Minus
2L 11130112..11130171 17..76 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:39 Download gff for BS03615.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11128993..11130001 77..1085 100 <- Minus
arm_2L 11130112..11130171 17..76 100   Minus

BS03615.pep Sequence

Translation from 16 to 1086

> BS03615.pep
MALWVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKT
RIMCLLREMYGSGVERLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPSDA
GMYDRTVVIDLIKQVAQTHQIEISGQREFKVIVISEGDELTKDAQHALRR
TMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNETEIVSILQNTC
KREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKAPFTANQEIPDLD
WQVFLRETASQIISEQTPAKLEKIRERLYELLTQGVPPNLIFRGLVEQLV
NNCDMSIKAKTLEFATEYEHRMQSGAKHIFHLEAFVAQFMNIYKKFLSEL
DMTDDF*

BS03615.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
RfC38-PB 356 CG6258-PB 1..356 1..356 1810 100 Plus
RfC38-PA 356 CG6258-PA 1..356 1..356 1810 100 Plus
RfC3-PA 332 CG5313-PA 13..321 4..339 267 25.9 Plus
CG8142-PA 353 CG8142-PA 30..245 2..239 267 29 Plus
RfC4-PA 331 CG14999-PA 18..228 4..242 235 27.6 Plus