Clone Sequence Records
BS03615.3prime Sequence
955 bp (792 high quality bases) assembled on 2005-12-01
> BS03615.3prime
ATGGTCTAGAAAGCTTTTAAAAATCATCCGTCATGTCCAGCTCAGAAAGG
AACTTTTTATAGATGTTCATAAACTGAGCGACGAACGCTTCAAGATGAAA
AATGTGCTTGGCGCCGGACTGCATCCGGTGCTCGTACTCGGTGGCGAACT
CGAGCGTCTTTGCCTTGATGGACATATCACAATTGTTAACCAGCTGTTCG
ACCAGGCCGCGGAATATGAGATTAGGTGGAACGCCTTGCGTGAGTAGCTC
GTACAGGCGTTCGCGGATCTTCTCCAGTTTGGCAGGCGTTTGCTCACTGA
TAATCTGAGATGCTGTCTCACGCAGGAACACCTGCCAGTCCAGGTCGGGA
ATCTCCTGATTGGCGGTAAACGGCGCCTTGGCCACCTTGGCGGCCTCCAG
CATCAAAAGTGCTCGCCTGAGATTGCGCTCCGACTTGTCCACAACCCGTT
TGGCCAGCTCCACGGGCAGTGCGAGTCCCTCCCGCTTGCAAGTGTTCTGC
AAGATGGACACGATCTCCGTTTCGTTGGGAGCCGCCACCCGTATGCCCAG
GCAACGCGACCGTATGGCCGGAATGATCCGAGATGTGGAGTTCACCGATA
TGATTATCCGGCACGTGGCCACATATTTCTCCATCGTACGGCGCAGGGCG
TGCTGGGCATCCTTGGTGAGTTCGTCGCCCTCCGAAATTACAATCACCTT
GAATTCCCGTTGGCCACTAATCTCAATTTGATGCGTCTGGGCCACCTGCT
TGATGAGATCGATCACCACCGTGCGGTCGTACATGCCAGCGTCGGAGGGA
TTCACCTCCAAGTGGTAGTTGCTGCTGACCGTCATCACCTCTACCTTCCG
ATTGGATGGCGTGGTGAATGTCATGGTCTCGCTCCTCAACCGCTCAACGC
CGGATCCGTACATCTCCCGTAGCANGCACATGATGCGTGTCTTCTTGCCA
GCACC
BS03615.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6258-PA | 1071 | RfC38-RA | 133..1071 | 955..17 | 4676 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:11:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RfC38-RB | 1604 | CG6258-RB | 607..1546 | 955..16 | 4689 | 99.9 | Minus |
RfC38-RA | 1276 | CG6258-RA | 279..1218 | 955..16 | 4689 | 99.9 | Minus |
Nup160-RA | 4747 | CG4738-RA | 4402..4747 | 16..361 | 1730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:11:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11128990..11129929 | 16..955 | 4689 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-01-30 16:11:05 has no hits.
BS03615.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:21 Download gff for
BS03615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RfC38-PA | 133..1071 | 17..955 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:43:37 Download gff for
BS03615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6258-PA | 133..1071 | 17..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:22:22 Download gff for
BS03615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RfC38-RA | 279..1228 | 4..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:49:16 Download gff for
BS03615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RfC38-RA | 279..1228 | 4..955 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:49:16 Download gff for
BS03615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11128980..11129929 | 4..955 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:22:22 Download gff for
BS03615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11128980..11129929 | 4..955 | 99 | | Plus |
BS03615.5prime Sequence
893 bp (746 high quality bases) assembled on 2005-12-01
> BS03615.5prime
GAAGTTATCAGTCGACATGGCACTTTGGGTGGATAAATACCGTCCGCGGG
AGCTGTCCAAATTGGACTTCCACAAGGATCAAGCGGAGAACCTACGCAAC
CTTTGCAAGCAGAGCGATTTTCCTCATCTGATGTTCTACGGACCCTCGGG
TGCTGGCAAGAAGACACGCATCATGTGCCTGCTACGGGAGATGTACGGAT
CCGGCGTTGAGCGGTTGAGGAGCGAGACCATGACATTCACCACGCCATCC
AATCGGAAGGTAGAGGTGATGACGGTCAGCAGCAACTACCACTTGGAGGT
GAATCCCTCCGACGCTGGCATGTACGACCGCACGGTGGTGATCGATCTCA
TCAAGCAGGTGGCCCAGACGCATCAAATTGAGATTAGTGGCCAACGGGAA
TTCAAGGTGATTGTAATTTCGGAGGGCGACGAACTCACCAAGGATGCCCA
GCACGCCCTGCGCCGTACGATGGAGAAATATGTGGCCACGTGCCGGATAA
TCATATCGGTGAACTCCACATCTCGGATCATTCCGGCCATACGGTCGCGT
TGCCTGGGCATACGGGTGGCGGCTCCCAACGAAACGGAGATCGTGTCCAT
CTTGCAGAACACTTGCAAGCGGGAGGGACTCGCACTGCCCGTGGAGCTGG
CCAAACGGGTTGTGGACAAGTCGGAGCGCAATCTCAGGCGAGCACTTTTG
ATGCTGGAGGCCGCCAAGGTGGCCAAGGCGCCGTTTACCGCCAATCAGGA
GATTCCCGACCTGGACTGGCAGGTGTTCCTGCGTGAGACAGCATCTCAGA
TTATCAGTGAGCAAACGCCTGCCAAACTGGAGAAGATCCGCGAACGCCTG
TACGAGCTACTCACGCAAAGCGTTCCACCTAATCTCATATTCC
BS03615.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6258-PA | 1071 | RfC38-RA | 1..877 | 17..893 | 4360 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:48:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RfC38-RB | 1604 | CG6258-RB | 471..1351 | 13..893 | 4375 | 99.8 | Plus |
RfC38-RA | 1276 | CG6258-RA | 143..1023 | 13..893 | 4375 | 99.8 | Plus |
Nup160-RA | 4747 | CG4738-RA | 4597..4747 | 893..743 | 740 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:48:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11129185..11130003 | 893..75 | 4080 | 99.9 | Minus |
2L | 23513712 | 2L | 11130111..11130175 | 77..13 | 310 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:48:06 has no hits.
BS03615.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:22 Download gff for
BS03615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RfC38-PA | 1..877 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:43:38 Download gff for
BS03615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6258-PA | 1..877 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:30:55 Download gff for
BS03615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RfC38-RA | 138..1023 | 4..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:50:50 Download gff for
BS03615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RfC38-RA | 138..1023 | 4..893 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:50:50 Download gff for
BS03615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11129185..11130001 | 77..893 | 99 | <- | Minus |
2L | 11130112..11130180 | 4..76 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:30:55 Download gff for
BS03615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11129185..11130001 | 77..893 | 99 | <- | Minus |
arm_2L | 11130112..11130180 | 4..76 | 93 | | Minus |
BS03615.complete Sequence
1103 bp (1103 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634724
> BS03615.complete
GAAGTTATCAGTCGACATGGCACTTTGGGTGGATAAATACCGTCCGCGGG
AGCTGTCCAAATTGGACTTCCACAAGGATCAAGCGGAGAACCTACGCAAC
CTTTGCAAGCAGAGCGATTTTCCTCATCTGATGTTCTACGGACCCTCGGG
TGCTGGCAAGAAGACACGCATCATGTGCCTGCTACGGGAGATGTACGGAT
CCGGCGTTGAGCGGTTGAGGAGCGAGACCATGACATTCACCACGCCATCC
AATCGGAAGGTAGAGGTGATGACGGTCAGCAGCAACTACCACTTGGAGGT
GAATCCCTCCGACGCTGGCATGTACGACCGCACGGTGGTGATCGATCTCA
TCAAGCAGGTGGCCCAGACGCATCAAATTGAGATTAGTGGCCAACGGGAA
TTCAAGGTGATTGTAATTTCGGAGGGCGACGAACTCACCAAGGATGCCCA
GCACGCCCTGCGCCGTACGATGGAGAAATATGTGGCCACGTGCCGGATAA
TCATATCGGTGAACTCCACATCTCGGATCATTCCGGCCATACGGTCGCGT
TGCCTGGGCATACGGGTGGCGGCTCCCAACGAAACGGAGATCGTGTCCAT
CTTGCAGAACACTTGCAAGCGGGAGGGACTCGCACTGCCCGTGGAGCTGG
CCAAACGGGTTGTGGACAAGTCGGAGCGCAATCTCAGGCGAGCACTTTTG
ATGCTGGAGGCCGCCAAGGTGGCCAAGGCGCCGTTTACCGCCAATCAGGA
GATTCCCGACCTGGACTGGCAGGTGTTCCTGCGTGAGACAGCATCTCAGA
TTATCAGTGAGCAAACGCCTGCCAAACTGGAGAAGATCCGCGAACGCCTG
TACGAGCTACTCACGCAAGGCGTTCCACCTAATCTCATATTCCGCGGCCT
GGTCGAACAGCTGGTTAACAATTGTGATATGTCCATCAAGGCAAAGACGC
TCGAGTTCGCCACCGAGTACGAGCACCGGATGCAGTCCGGCGCCAAGCAC
ATTTTTCATCTTGAAGCGTTCGTCGCTCAGTTTATGAACATCTATAAAAA
GTTCCTTTCTGAGCTGGACATGACGGATGATTTTTAAAAGCTTTCTAGAC
CAT
BS03615.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:56:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RfC38-RB | 1071 | CG6258-PB | 1..1071 | 17..1087 | 5355 | 100 | Plus |
RfC38-RA | 1071 | CG6258-PA | 1..1071 | 17..1087 | 5355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:56:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RfC38-RB | 1604 | CG6258-RB | 471..1546 | 13..1088 | 5365 | 99.9 | Plus |
RfC38-RA | 1276 | CG6258-RA | 143..1218 | 13..1088 | 5365 | 99.9 | Plus |
Nup160-RA | 4747 | CG4738-RA | 4402..4747 | 1088..743 | 1730 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:56:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11128990..11130003 | 1088..75 | 5070 | 100 | Minus |
2L | 23513712 | 2L | 11130111..11130175 | 77..13 | 310 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:56:09 has no hits.
BS03615.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:29:05 Download gff for
BS03615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RfC38-RA | 1..1071 | 17..1087 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:12:21 Download gff for
BS03615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RfC38-RA | 466..1556 | 4..1100 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:39 Download gff for
BS03615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RfC38-RA | 147..1215 | 17..1085 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:29:05 Download gff for
BS03615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RfC38-RA | 466..1556 | 4..1100 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:09 Download gff for
BS03615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RfC38-RA | 147..1215 | 17..1085 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:09 Download gff for
BS03615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11128993..11130001 | 77..1085 | 100 | <- | Minus |
2L | 11130112..11130171 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:39 Download gff for
BS03615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11128993..11130001 | 77..1085 | 100 | <- | Minus |
arm_2L | 11130112..11130171 | 17..76 | 100 | | Minus |
BS03615.pep Sequence
Translation from 16 to 1086
> BS03615.pep
MALWVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKT
RIMCLLREMYGSGVERLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPSDA
GMYDRTVVIDLIKQVAQTHQIEISGQREFKVIVISEGDELTKDAQHALRR
TMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNETEIVSILQNTC
KREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKAPFTANQEIPDLD
WQVFLRETASQIISEQTPAKLEKIRERLYELLTQGVPPNLIFRGLVEQLV
NNCDMSIKAKTLEFATEYEHRMQSGAKHIFHLEAFVAQFMNIYKKFLSEL
DMTDDF*
BS03615.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RfC38-PB | 356 | CG6258-PB | 1..356 | 1..356 | 1810 | 100 | Plus |
RfC38-PA | 356 | CG6258-PA | 1..356 | 1..356 | 1810 | 100 | Plus |
RfC3-PA | 332 | CG5313-PA | 13..321 | 4..339 | 267 | 25.9 | Plus |
CG8142-PA | 353 | CG8142-PA | 30..245 | 2..239 | 267 | 29 | Plus |
RfC4-PA | 331 | CG14999-PA | 18..228 | 4..242 | 235 | 27.6 | Plus |