Clone BS03616 Report

Search the DGRC for BS03616

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:36
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptdUTPase-RA
Protein status:BS03616.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03616.3prime Sequence

597 bp (596 high quality bases) assembled on 2005-12-01

> BS03616.3prime
ATGGTCTAGAAAGCTTTTACGTAGCAACAGGAGCCGGAGCAGCTCCCTCC
GGTTCGGCAGCCTTTTCTCCGTTGCCGTTCTGCGCCTTGGCTGCCGGCAG
ATCCTTGACTCCGGTGGAACCGAATCCTGCCTCGCCGCGCTCGGTGTCCT
CCAGTTTGTCCACCATCACCAGTTGCGGATAGAAGATACGCTCGCAAATG
AACTGGGCGATGCGGTCGCCATGCTTCACCTCGAAATCAACATCTGAGTG
ATTGAACAGGACGACGCCGAGATTGCCGCGATAATCCTCGTCCACCACAC
CGGCGCCCACATCAATGAAGTTCTTCACCGCCAGCCCGGATCGTGGGGCT
ACGCGTCCGTAGGAGCCCTCCGGAACCTGCACTTGCAGATCGGTCTTGAC
AATGGCCTTTCCGCGTGCCGGCACCACAACGTCGTAGGCGCTGCGCAGGT
CAACTCCCGCCGCTTTGGCGGATCCCCTCACCGGCTCCAAAGCATTCTCG
GTGAGTTTGGCGAATCGCAGGACGCACGTGTCGATCTTCATCTTCTTGGC
AGCTGGAATGTCGGCGAAATCGGTTGATGGCATGTCGACTGATAACT

BS03616.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4584-PA 567 dUTPase-RA 1..567 583..17 2835 100 Minus
CG4584-PB 525 dUTPase-RB 1..525 541..17 2625 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:01:22
Subject Length Description Subject Range Query Range Score Percent Strand
dUTPase-RA 824 CG4584-RA 130..697 583..16 2840 100 Minus
dUTPase-RD 750 CG4584-RD 69..623 570..16 2775 100 Minus
dUTPase-RB 732 CG4584-RB 69..605 552..16 2685 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:01:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11011441..11012008 583..16 2840 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:01:19 has no hits.

BS03616.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:23 Download gff for BS03616.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4584-PA 1..567 17..583 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:43:40 Download gff for BS03616.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4584-PA 1..567 17..583 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:10:58 Download gff for BS03616.3prime
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RA 125..697 16..588 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:39:37 Download gff for BS03616.3prime
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RA 125..697 16..588 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:39:37 Download gff for BS03616.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 11011436..11012008 16..588 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:10:58 Download gff for BS03616.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11011436..11012008 16..588 99   Minus

BS03616.5prime Sequence

597 bp (596 high quality bases) assembled on 2005-12-01

> BS03616.5prime
GAAGTTATCAGTCGACATGCCATCAACCGATTTCGCCGACATTCCAGCTG
CCAAGAAGATGAAGATCGACACGTGCGTCCTGCGATTCGCCAAACTCACC
GAGAATGCTTTGGAGCCGGTGAGGGGATCCGCCAAAGCGGCGGGAGTTGA
CCTGCGCAGCGCCTACGACGTTGTGGTGCCGGCACGCGGAAAGGCCATTG
TCAAGACCGATCTGCAAGTGCAGGTTCCGGAGGGCTCCTACGGACGCGTA
GCCCCACGATCCGGGCTGGCGGTGAAGAACTTCATTGATGTGGGCGCCGG
TGTGGTGGACGAGGATTATCGCGGCAATCTCGGCGTCGTCCTGTTCAATC
ACTCAGATGTTGATTTCGAGGTGAAGCATGGCGACCGCATCGCCCAGTTC
ATTTGCGAGCGTATCTTCTATCCGCAACTGGTGATGGTGGACAAACTGGA
GGACACCGAGCGCGGCGAGGCAGGATTCGGTTCCACCGGAGTCAAGGATC
TGCCGGCAGCCAAGGCGCAGAACGGCAACGGAGAAAAGGCTGCCGAACCG
GAGGGAGCTGCTCCGGCTCCTGTTGCTACGTAAAAGCTTTCTAGACC

BS03616.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4584-PA 567 dUTPase-RA 1..567 17..583 2835 100 Plus
CG4584-PB 525 dUTPase-RB 1..525 59..583 2625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
dUTPase-RA 824 CG4584-RA 130..697 17..584 2840 100 Plus
dUTPase-RD 750 CG4584-RD 69..623 30..584 2775 100 Plus
dUTPase-RB 732 CG4584-RB 69..605 48..584 2685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11011441..11012008 17..584 2840 100 Plus
Blast to na_te.dros performed on 2015-02-04 03:49:42 has no hits.

BS03616.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:24 Download gff for BS03616.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4584-PA 1..567 17..583 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:43:42 Download gff for BS03616.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4584-PA 1..567 17..583 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:04:25 Download gff for BS03616.5prime
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RA 125..697 12..584 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:47:01 Download gff for BS03616.5prime
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RA 125..697 12..584 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:47:01 Download gff for BS03616.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 11011436..11012008 12..584 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:04:25 Download gff for BS03616.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11011436..11012008 12..584 99   Plus

BS03616.complete Sequence

599 bp (599 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634725

> BS03616.complete
GAAGTTATCAGTCGACATGCCATCAACCGATTTCGCCGACATTCCAGCTG
CCAAGAAGATGAAGATCGACACGTGCGTCCTGCGATTCGCCAAACTCACC
GAGAATGCTTTGGAGCCGGTGAGGGGATCCGCCAAAGCGGCGGGAGTTGA
CCTGCGCAGCGCCTACGACGTTGTGGTGCCGGCACGCGGAAAGGCCATTG
TCAAGACCGATCTGCAAGTGCAGGTTCCGGAGGGCTCCTACGGACGCGTA
GCCCCACGATCCGGGCTGGCGGTGAAGAACTTCATTGATGTGGGCGCCGG
TGTGGTGGACGAGGATTATCGCGGCAATCTCGGCGTCGTCCTGTTCAATC
ACTCAGATGTTGATTTCGAGGTGAAGCATGGCGACCGCATCGCCCAGTTC
ATTTGCGAGCGTATCTTCTATCCGCAACTGGTGATGGTGGACAAACTGGA
GGACACCGAGCGCGGCGAGGCAGGATTCGGTTCCACCGGAGTCAAGGATC
TGCCGGCAGCCAAGGCGCAGAACGGCAACGGAGAAAAGGCTGCCGAACCG
GAGGGAGCTGCTCCGGCTCCTGTTGCTACGTAAAAGCTTTCTAGACCAT

BS03616.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
dUTPase-RA 567 CG4584-PA 1..567 17..583 2835 100 Plus
dUTPase-RB 525 CG4584-PB 1..525 59..583 2625 100 Plus
dUTPase-RD 525 CG4584-PD 1..525 59..583 2625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
dUTPase-RA 824 CG4584-RA 130..697 17..584 2840 100 Plus
dUTPase-RD 750 CG4584-RD 69..623 30..584 2775 100 Plus
dUTPase-RB 732 CG4584-RB 69..605 48..584 2685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11011441..11012008 17..584 2840 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:38:24 has no hits.

BS03616.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:41 Download gff for BS03616.complete
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RA 1..567 17..583 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:31 Download gff for BS03616.complete
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RA 102..674 12..584 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:40 Download gff for BS03616.complete
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RA 130..694 17..581 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:41 Download gff for BS03616.complete
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RA 102..674 12..584 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:29:19 Download gff for BS03616.complete
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RA 130..694 17..581 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:29:19 Download gff for BS03616.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11011441..11012005 17..581 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:40 Download gff for BS03616.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11011441..11012005 17..581 100   Plus

BS03616.pep Sequence

Translation from 16 to 582

> BS03616.pep
MPSTDFADIPAAKKMKIDTCVLRFAKLTENALEPVRGSAKAAGVDLRSAY
DVVVPARGKAIVKTDLQVQVPEGSYGRVAPRSGLAVKNFIDVGAGVVDED
YRGNLGVVLFNHSDVDFEVKHGDRIAQFICERIFYPQLVMVDKLEDTERG
EAGFGSTGVKDLPAAKAQNGNGEKAAEPEGAAPAPVAT*

BS03616.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:44
Subject Length Description Subject Range Query Range Score Percent Strand
dUTPase-PA 188 CG4584-PA 1..188 1..188 959 100 Plus
dUTPase-PB 174 CG4584-PB 1..174 15..188 887 100 Plus
dUTPase-PD 174 CG4584-PD 1..174 15..188 887 100 Plus
dUTPase-PC 174 CG4584-PC 1..174 15..188 887 100 Plus