Clone Sequence Records
BS03617.3prime Sequence
914 bp (878 high quality bases) assembled on 2005-12-01
> BS03617.3prime
ATGGTCTAGAAAGCTTCTATCCCTGGTATTTCCGCACAGTGACGGCTGGT
GTCCGCGGACTACGGCCGGGCGTGGAGGAGTCGCCATGGCCGTTTACCTT
GCGCAGGTTAACTCGGGTCACAGGTGAGGCCTCCTCCTTCGAACTGGACG
CCAACGCGCTGCGGGATGAGGGTGTACGTGAATCAACCGCCGTCGCCTTA
TCCTGGTCCGCTTTCTTTTTGCGTTTGACATTCACAATTACGTTGGCATC
CATGCTAACGTCGAGCTCGAAGTTAAACTCATAGGTCTTCTTGGAACGCG
GCTGTGGAGTGAGGTCATCGTTGATCACGGTTTTGCCACCGGGACGTCCA
CGCAGCGAAATAGACGGGCTGAAATTGATCTTGGCATTGGGAGTACGGAG
CCGCGCTGCTGTTGGTGTCTGTGGCTTGGGGCTGGCCTTCGGCGTGCTCC
TTGGCTTGGGACTGGCCTTGGGCGTAGCTCTCTCCCTGGGTGTTGACTTG
GGCTCAGTCTTAACGCGCTTCTGGCTGGGTGGTGAACTATCTGCGACTCG
CTTCAAGGGCGATACCTTGGCGTTTCGGGCTGATGGGGTGACCTTTTTGG
CTGTCTTCTTGCGATGTGACTTCTCCTCCTCCTCCTCATCATCTTCGCTG
GCGGAGATTTTTTCGTCCAGTGATGAGTTCAAGACTGGCGAATCAATTTT
TTTTGCTTTCCTGGCTGTTGCTGCCTTGCTCGTGCCGGGCGGACTTAGAT
TATTGTTGCTGCTGGTCTGTGGCTTCATCTTAAAGTCGAGATCTCCGTTG
TTTGGAATTTTCAGCTGCTTCAGCGCACTTGAGAACCAACTGCGACACTT
GTCGTAGTCCGGCTCCTGGTTGTGTGTTAGTTTTGAGACATACTTCATGA
AATCCCCCATTGGC
BS03617.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6386-PA | 1800 | ball-RA | 903..1800 | 914..17 | 4465 | 99.8 | Minus |
| CG6386-PB | 1800 | ball-RB | 903..1800 | 914..17 | 4465 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:57:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ball-RB | 1965 | CG6386-RB | 1004..1905 | 914..13 | 4480 | 99.8 | Minus |
| ball-RA | 2027 | CG6386-RA | 1066..1967 | 914..13 | 4480 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:57:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26864665..26865566 | 13..914 | 4480 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:57:53 has no hits.
BS03617.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:25 Download gff for
BS03617.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ball-PB | 903..1800 | 17..914 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:43:43 Download gff for
BS03617.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6386-PB | 903..1800 | 17..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:10:35 Download gff for
BS03617.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ball-RA | 1066..1970 | 10..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:32:13 Download gff for
BS03617.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ball-RA | 1066..1970 | 10..914 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:32:13 Download gff for
BS03617.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26864661..26865566 | 10..914 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:10:35 Download gff for
BS03617.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22690383..22691288 | 10..914 | 99 | | Plus |
BS03617.5prime Sequence
902 bp (741 high quality bases) assembled on 2005-12-01
> BS03617.5prime
GAAGTTATCAGTCGACATGCCGCGTGTAGCCAAGCCGAAAGCCGCCGCTC
CGGCCAAGAAGGTGGTGTCGGCCAAGAAGGCCAAGAGCAAGCTGTACAAG
ATGCCGGAGAAGGTGAAGGAGGGCACAGTTTTCACCGATTTAGCCAAAGG
CCAGTGGCGCATTGGACCCTCGATCGGAGTTGGAGGATTCGGTGAGATCT
ACGCGGCTTGCAAAGTGGGTGAGAAGAACTACGATGCTGTGGTCAAATGC
GAGCCACATGGCAATGGTCCTCTGTTCGTGGAGATGCACTTCTACCTGCG
CAACGCCAAGCTGGAGGACATCAAACAGTTCATGCAGAAGCACGGTCTCA
AGTCCCTGGGCATGCCCTACATACTGGCTAATGGTTCCGTGGAGGTCAAT
GGTGAAAAGCATCGATTTATAGTCATGCCGCGCTACGGCAGCGATTTGAC
CAAGTTTCTGGAACAGAACGGCAAGCGACTGCCCGAGGGCACTGTCTACC
GACTGGCCATTCAGATGCTGGACGTCTATCAGTACATGCACAGCAACGGC
TACGTTCATGCCGATCTTAAGGCAGCCAACATACTGCTGGGCCTGGAAAA
AGGCGGCGCTGCGCAGGCGTACCTGGTGGATTTCGGCCTGGCCTCACACT
TCGTCACCGGTGACTTCAAGCCGGACCCCAAGAAGATGCATAATGGCACC
ATAGAATACACATCAAGGGATGCTCATCTGGGCGTGCCAACCAGACGAGC
TGATCTGGAGATACTCGGTTACAATCTCATCGAGTGGCTGGGCGCGGAGT
TGCCGTGGGTCACGCAGAAACTACTGGCTGTACCCCCCAAAGTCAAAAGG
CCAAGGAAGCATTTATGGATAACATAGGCGAGAGTCTGAAGACGCTGTTT
TC
BS03617.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6386-PA | 1800 | ball-RA | 1..827 | 17..843 | 4135 | 100 | Plus |
| CG6386-PB | 1800 | ball-RB | 1..827 | 17..843 | 4135 | 100 | Plus |
| CG6386-PA | 1800 | ball-RA | 828..885 | 843..900 | 290 | 100 | Plus |
| CG6386-PB | 1800 | ball-RB | 828..885 | 843..900 | 290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:25:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ball-RB | 1965 | CG6386-RB | 102..986 | 17..900 | 4400 | 99.9 | Plus |
| ball-RA | 2027 | CG6386-RA | 164..1048 | 17..900 | 4400 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:25:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26865584..26866234 | 900..251 | 3205 | 99.8 | Minus |
| 3R | 32079331 | 3R | 26866290..26866524 | 251..17 | 1175 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:25:06 has no hits.
BS03617.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:26 Download gff for
BS03617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ball-PB | 1..886 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:43:44 Download gff for
BS03617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6386-PB | 1..886 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:34:34 Download gff for
BS03617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ball-RA | 158..1049 | 9..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:39:12 Download gff for
BS03617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ball-RA | 158..1049 | 9..902 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:39:12 Download gff for
BS03617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26865582..26866234 | 251..902 | 99 | <- | Minus |
| 3R | 26866291..26866530 | 9..250 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:34:34 Download gff for
BS03617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22691304..22691956 | 251..902 | 99 | <- | Minus |
| arm_3R | 22692013..22692252 | 9..250 | 98 | | Minus |
BS03617.complete Sequence
1832 bp assembled on 2008-01-02
GenBank Submission: FJ634726
> BS03617.complete
GAAGTTATCAGTCGACATGCCGCGTGTAGCCAAGCCGAAAGCCGCCGCTC
CGGCCAAGAAGGTGGTGTCGGCCAAGAAGGCCAAGAGCAAGCTGTACAAG
ATGCCGGAGAAGGTGAAGGAGGGCACAGTTTTCACCGATTTAGCCAAAGG
CCAGTGGCGCATTGGACCCTCGATCGGAGTTGGAGGATTCGGTGAGATCT
ACGCGGCTTGCAAAGTGGGTGAGAAGAACTACGATGCTGTGGTCAAATGC
GAGCCACATGGCAATGGTCCTCTGTTCGTGGAGATGCACTTCTACCTGCG
CAACGCCAAGCTGGAGGACATCAAACAGTTCATGCAGAAGCACGGTCTCA
AGTCCCTGGGCATGCCCTACATACTGGCTAATGGTTCCGTGGAGGTCAAT
GGTGAAAAGCATCGATTTATAGTCATGCCGCGCTACGGCAGCGATTTGAC
CAAGTTTCTGGAACAGAACGGCAAGCGACTGCCCGAGGGCACTGTCTACC
GACTGGCCATTCAGATGCTGGACGTCTATCAGTACATGCACAGCAACGGC
TACGTTCATGCCGATCTTAAGGCAGCCAACATACTGCTGGGCCTGGAAAA
AGGCGGCGCTGCGCAGGCGTACCTGGTGGATTTCGGCCTGGCCTCACACT
TCGTCACCGGTGACTTCAAGCCGGACCCCAAGAAGATGCATAATGGCACC
ATAGAATACACATCAAGGGATGCTCATCTGGGCGTGCCAACCAGACGAGC
TGATCTGGAGATACTCGGTTACAATCTCATCGAGTGGCTGGGCGCGGAGT
TGCCGTGGGTCACGCAGAAACTACTGGCTGTACCCCCCAAAGTTCAAAAG
GCCAAGGAAGCATTTATGGATAACATAGGCGAGAGTCTGAAGACGCTGTT
TCCGAAGGGAGTGCCCCCGCCAATTGGGGATTTCATGAAGTATGTCTCAA
AACTAACACACAACCAGGAGCCGGACTACGACAAGTGTCGCAGTTGGTTC
TCAAGTGCGCTGAAGCAGCTGAAAATTCCAAACAACGGAGATCTCGACTT
TAAGATGAAGCCACAGACCAGCAGCAACAATAATCTAAGTCCGCCCGGCA
CGAGCAAGGCAGCAACAGCCAGGAAAGCAAAAAAAATTGATTCGCCAGTC
TTGAACTCATCACTGGACGAAAAAATCTCCGCCAGCGAAGATGATGAGGA
GGAGGAGGAGAAGTCACATCGCAAGAAGACAGCCAAAAAGGTCACCCCAT
CAGCCCGAAACGCCAAGGTATCGCCCTTGAAGCGAGTCGCAGATAGTTCA
CCACCCAGCCAGAAGCGCGTTAAGACTGAGCCCAAGTCAACACCCAGGGA
GAGAGCTACGCCCAAGGCCAGTCCCAAGCCAAGGAGCACGCCGAAGGCCA
GCCCCAAGCCACAGACACCAACAGCAGCGCGGCTCCGTACTCCCAATGCC
AAGATCAATTTCAGCCCGTCTATTTCGCTGCGTGGACGTCCCGGTGGCAA
AACCGTGATCAACGATGACCTCACTCCACAGCCGCGTTCCAAGAAGACCT
ATGAGTTTAACTTCGAGCTCGACGTTAGCATGGATGCCAACGTAATTGTG
AATGTCAAACGCAAAAAGAAAGCGGACCAGGATAAGGCGACGGCGGTTGA
TTCACGTACACCCTCATCCCGCAGCGCGTTGGCGTCCAGTTCGAAGGAGG
AGGCCTCACCTGTGACCCGAGTTAACCTGCGCAAGGTAAACGGCCATGGC
GACTCCTCCACGCCCGGCCGTAGTCCGCGGACACCAGCCGTCACTGTGCG
GAAATACCAGGGATAGAAGCTTTCTAGACCAT
BS03617.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:47:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ball-RB | 1800 | CG6386-PB | 1..1800 | 17..1816 | 9000 | 100 | Plus |
| ball-RA | 1800 | CG6386-PA | 1..1800 | 17..1816 | 9000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:47:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ball-RB | 1965 | CG6386-RB | 102..1905 | 17..1820 | 9005 | 99.9 | Plus |
| ball-RA | 2027 | CG6386-RA | 164..1967 | 17..1820 | 9005 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:47:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26864665..26866234 | 1820..251 | 7835 | 99.9 | Minus |
| 3R | 32079331 | 3R | 26866290..26866524 | 251..17 | 1175 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:47:39 has no hits.
BS03617.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:24 Download gff for
BS03617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ball-RB | 1..1800 | 17..1816 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:19 Download gff for
BS03617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ball-RB | 186..1985 | 17..1816 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:07 Download gff for
BS03617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ball-RA | 164..1963 | 17..1816 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:04:24 Download gff for
BS03617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ball-RB | 180..1992 | 9..1823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:22 Download gff for
BS03617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ball-RA | 164..1963 | 17..1816 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:22 Download gff for
BS03617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26864669..26866234 | 251..1816 | 100 | <- | Minus |
| 3R | 26866291..26866524 | 17..250 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:07 Download gff for
BS03617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22690391..22691956 | 251..1816 | 100 | <- | Minus |
| arm_3R | 22692013..22692246 | 17..250 | 100 | | Minus |
BS03617.pep Sequence
Translation from 16 to 1815
> BS03617.pep
MPRVAKPKAAAPAKKVVSAKKAKSKLYKMPEKVKEGTVFTDLAKGQWRIG
PSIGVGGFGEIYAACKVGEKNYDAVVKCEPHGNGPLFVEMHFYLRNAKLE
DIKQFMQKHGLKSLGMPYILANGSVEVNGEKHRFIVMPRYGSDLTKFLEQ
NGKRLPEGTVYRLAIQMLDVYQYMHSNGYVHADLKAANILLGLEKGGAAQ
AYLVDFGLASHFVTGDFKPDPKKMHNGTIEYTSRDAHLGVPTRRADLEIL
GYNLIEWLGAELPWVTQKLLAVPPKVQKAKEAFMDNIGESLKTLFPKGVP
PPIGDFMKYVSKLTHNQEPDYDKCRSWFSSALKQLKIPNNGDLDFKMKPQ
TSSNNNLSPPGTSKAATARKAKKIDSPVLNSSLDEKISASEDDEEEEEKS
HRKKTAKKVTPSARNAKVSPLKRVADSSPPSQKRVKTEPKSTPRERATPK
ASPKPRSTPKASPKPQTPTAARLRTPNAKINFSPSISLRGRPGGKTVIND
DLTPQPRSKKTYEFNFELDVSMDANVIVNVKRKKKADQDKATAVDSRTPS
SRSALASSSKEEASPVTRVNLRKVNGHGDSSTPGRSPRTPAVTVRKYQG*
BS03617.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:28:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ball-PB | 599 | CG6386-PB | 1..599 | 1..599 | 3110 | 100 | Plus |
| ball-PA | 599 | CG6386-PA | 1..599 | 1..599 | 3110 | 100 | Plus |
| CG8878-PC | 1004 | CG8878-PC | 522..659 | 202..335 | 284 | 41.3 | Plus |
| CG8878-PB | 1004 | CG8878-PB | 522..659 | 202..335 | 284 | 41.3 | Plus |
| CG8878-PA | 1004 | CG8878-PA | 522..659 | 202..335 | 284 | 41.3 | Plus |
| CG8878-PC | 1004 | CG8878-PC | 94..282 | 18..191 | 263 | 30.9 | Plus |
| CG8878-PB | 1004 | CG8878-PB | 94..282 | 18..191 | 263 | 30.9 | Plus |
