Clone Sequence Records
BS03619.5prime Sequence
603 bp (602 high quality bases) assembled on 2005-12-01
> BS03619.5prime
GAAGTTATCAGTCGACATGTTCAAGCACCTGCTGACTTTGTTCGCCCTGT
GCGCGGTGTTTAGCACCTGCCTGTCGGAAGACGAGACCCGTGCCCGTCTC
CTGGTCTCTAAGCAGATCCTGAACAAGTACCTGGTGGAGAAGAGCGACCT
GTTGGTACGCTACACCATCTTCAACGTGGGCAGCGGTGCCGCCACCAAGG
TGCGATTGGTAGACTCCGGCTTCCACCCGGAGGCCTTCGACGTTGTCGGA
GGACAGCCCACCGCCGTGGTCGATAGGATCGCTCCCCAGACCAACTTCAC
CCATGTCCTGGTGGTGAGGCCCAAGGCCTTCGGCTACTTCAACTTCACCG
CCGCCGAGGTGTCCTACAAGGCTGTCGAGGAGTCGGAGACGCTCCAACTG
GCGGTCAGCTCTGAGCCCGGTGAGGGTGGAATTGTCAACCTGAACGAGTA
CAACAAGCGCTTCTCCTCCCATTTCTTCGACTGGGTGGCCTTCGCCGTGA
TGACTCTGCCTTCCCTGGCCATTCCTCTGGCTCTGTGGCACCAGTCCAAG
AGCAAATATGAGCGCTCTGGAAAGAACAAGAAGCACTAAAAGCTTTCTAG
ACC
BS03619.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5474-PA | 573 | SsRbeta-RA | 1..573 | 17..589 | 2865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:53:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SsRbeta-RA | 950 | CG5474-RA | 98..670 | 17..589 | 2865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:53:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16129909..16130283 | 17..391 | 1875 | 100 | Plus |
3L | 28110227 | 3L | 16130505..16130703 | 391..589 | 995 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:53:11 has no hits.
BS03619.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:28 Download gff for
BS03619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5474-PA | 1..573 | 17..589 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:43:47 Download gff for
BS03619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5474-PA | 1..573 | 17..589 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 15:29:27 Download gff for
BS03619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SsRbeta-RA | 98..673 | 17..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:24:12 Download gff for
BS03619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SsRbeta-RA | 98..673 | 17..594 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:24:12 Download gff for
BS03619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16129898..16130283 | 4..391 | 98 | -> | Plus |
3L | 16130506..16130706 | 392..594 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 15:29:27 Download gff for
BS03619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16122998..16123383 | 4..391 | 98 | -> | Plus |
arm_3L | 16123606..16123806 | 392..594 | 99 | | Plus |
BS03619.3prime Sequence
603 bp (602 high quality bases) assembled on 2005-12-01
> BS03619.3prime
ATGGTCTAGAAAGCTTTTAGTGCTTCTTGTTCTTTCCAGAGCGCTCATAT
TTGCTCTTGGACTGGTGCCACAGAGCCAGAGGAATGGCCAGGGAAGGCAG
AGTCATCACGGCGAAGGCCACCCAGTCGAAGAAATGGGAGGAGAAGCGCT
TGTTGTACTCGTTCAGGTTGACAATTCCACCCTCACCGGGCTCAGAGCTG
ACCGCCAGTTGGAGCGTCTCCGACTCCTCGACAGCCTTGTAGGACACCTC
GGCGGCGGTGAAGTTGAAGTAGCCGAAGGCCTTGGGCCTCACCACCAGGA
CATGGGTGAAGTTGGTCTGGGGAGCGATCCTATCGACCACGGCGGTGGGC
TGTCCTCCGACAACGTCGAAGGCCTCCGGGTGGAAGCCGGAGTCTACCAA
TCGCACCTTGGTGGCGGCACCGCTGCCCACGTTGAAGATGGTGTAGCGTA
CCAACAGGTCGCTCTTCTCCACCAGGTACTTGTTCAGGATCTGCTTAGAG
ACCAGGAGACGGGCACGGGTCTCGTCTTCCGACAGGCAGGTGCTAAACAC
CGCGCACAGGGCGAACAAAGTCAGCAGGTGCTTGAACATGTCGACTGATA
ACT
BS03619.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5474-PA | 573 | SsRbeta-RA | 1..573 | 589..17 | 2865 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:53:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SsRbeta-RA | 950 | CG5474-RA | 98..670 | 589..17 | 2865 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:52:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16129909..16130283 | 589..215 | 1875 | 100 | Minus |
3L | 28110227 | 3L | 16130505..16130703 | 215..17 | 995 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 13:53:03 has no hits.
BS03619.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:27 Download gff for
BS03619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5474-PA | 1..573 | 17..589 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:43:45 Download gff for
BS03619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5474-PA | 1..573 | 17..589 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:04:47 Download gff for
BS03619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SsRbeta-RA | 98..673 | 12..589 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:53:01 Download gff for
BS03619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SsRbeta-RA | 98..673 | 12..589 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:53:01 Download gff for
BS03619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16129898..16130283 | 215..602 | 98 | -> | Minus |
3L | 16130506..16130706 | 12..214 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:04:47 Download gff for
BS03619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16122998..16123383 | 215..602 | 98 | -> | Minus |
arm_3L | 16123606..16123806 | 12..214 | 99 | | Minus |
BS03619.complete Sequence
605 bp (605 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634727
> BS03619.complete
GAAGTTATCAGTCGACATGTTCAAGCACCTGCTGACTTTGTTCGCCCTGT
GCGCGGTGTTTAGCACCTGCCTGTCGGAAGACGAGACCCGTGCCCGTCTC
CTGGTCTCTAAGCAGATCCTGAACAAGTACCTGGTGGAGAAGAGCGACCT
GTTGGTACGCTACACCATCTTCAACGTGGGCAGCGGTGCCGCCACCAAGG
TGCGATTGGTAGACTCCGGCTTCCACCCGGAGGCCTTCGACGTTGTCGGA
GGACAGCCCACCGCCGTGGTCGATAGGATCGCTCCCCAGACCAACTTCAC
CCATGTCCTGGTGGTGAGGCCCAAGGCCTTCGGCTACTTCAACTTCACCG
CCGCCGAGGTGTCCTACAAGGCTGTCGAGGAGTCGGAGACGCTCCAACTG
GCGGTCAGCTCTGAGCCCGGTGAGGGTGGAATTGTCAACCTGAACGAGTA
CAACAAGCGCTTCTCCTCCCATTTCTTCGACTGGGTGGCCTTCGCCGTGA
TGACTCTGCCTTCCCTGGCCATTCCTCTGGCTCTGTGGCACCAGTCCAAG
AGCAAATATGAGCGCTCTGGAAAGAACAAGAAGCACTAAAAGCTTTCTAG
ACCAT
BS03619.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:57:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SsRbeta-RA | 573 | CG5474-PA | 1..573 | 17..589 | 2865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:57:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SsRbeta-RA | 950 | CG5474-RA | 98..670 | 17..589 | 2865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:57:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16129909..16130283 | 17..391 | 1875 | 100 | Plus |
3L | 28110227 | 3L | 16130505..16130703 | 391..589 | 995 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:57:42 has no hits.
BS03619.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:29:06 Download gff for
BS03619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SsRbeta-RA | 1..573 | 17..589 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:12:23 Download gff for
BS03619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SsRbeta-RA | 75..650 | 17..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:32 Download gff for
BS03619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SsRbeta-RA | 103..668 | 22..587 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:29:06 Download gff for
BS03619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SsRbeta-RA | 75..650 | 17..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:50 Download gff for
BS03619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SsRbeta-RA | 103..668 | 22..587 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:50 Download gff for
BS03619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16129914..16130283 | 22..391 | 100 | -> | Plus |
3L | 16130506..16130701 | 392..587 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:32 Download gff for
BS03619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16123014..16123383 | 22..391 | 100 | -> | Plus |
arm_3L | 16123606..16123801 | 392..587 | 100 | | Plus |
BS03619.pep Sequence
Translation from 16 to 588
> BS03619.pep
MFKHLLTLFALCAVFSTCLSEDETRARLLVSKQILNKYLVEKSDLLVRYT
IFNVGSGAATKVRLVDSGFHPEAFDVVGGQPTAVVDRIAPQTNFTHVLVV
RPKAFGYFNFTAAEVSYKAVEESETLQLAVSSEPGEGGIVNLNEYNKRFS
SHFFDWVAFAVMTLPSLAIPLALWHQSKSKYERSGKNKKH*
BS03619.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SsRbeta-PA | 190 | CG5474-PA | 1..190 | 1..190 | 974 | 100 | Plus |