Clone BS03619 Report

Search the DGRC for BS03619

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:36
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptSsRbeta-RA
Protein status:BS03619.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03619.5prime Sequence

603 bp (602 high quality bases) assembled on 2005-12-01

> BS03619.5prime
GAAGTTATCAGTCGACATGTTCAAGCACCTGCTGACTTTGTTCGCCCTGT
GCGCGGTGTTTAGCACCTGCCTGTCGGAAGACGAGACCCGTGCCCGTCTC
CTGGTCTCTAAGCAGATCCTGAACAAGTACCTGGTGGAGAAGAGCGACCT
GTTGGTACGCTACACCATCTTCAACGTGGGCAGCGGTGCCGCCACCAAGG
TGCGATTGGTAGACTCCGGCTTCCACCCGGAGGCCTTCGACGTTGTCGGA
GGACAGCCCACCGCCGTGGTCGATAGGATCGCTCCCCAGACCAACTTCAC
CCATGTCCTGGTGGTGAGGCCCAAGGCCTTCGGCTACTTCAACTTCACCG
CCGCCGAGGTGTCCTACAAGGCTGTCGAGGAGTCGGAGACGCTCCAACTG
GCGGTCAGCTCTGAGCCCGGTGAGGGTGGAATTGTCAACCTGAACGAGTA
CAACAAGCGCTTCTCCTCCCATTTCTTCGACTGGGTGGCCTTCGCCGTGA
TGACTCTGCCTTCCCTGGCCATTCCTCTGGCTCTGTGGCACCAGTCCAAG
AGCAAATATGAGCGCTCTGGAAAGAACAAGAAGCACTAAAAGCTTTCTAG
ACC

BS03619.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG5474-PA 573 SsRbeta-RA 1..573 17..589 2865 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:53:14
Subject Length Description Subject Range Query Range Score Percent Strand
SsRbeta-RA 950 CG5474-RA 98..670 17..589 2865 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16129909..16130283 17..391 1875 100 Plus
3L 28110227 3L 16130505..16130703 391..589 995 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:53:11 has no hits.

BS03619.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:28 Download gff for BS03619.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5474-PA 1..573 17..589 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:43:47 Download gff for BS03619.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5474-PA 1..573 17..589 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 15:29:27 Download gff for BS03619.5prime
Subject Subject Range Query Range Percent Splice Strand
SsRbeta-RA 98..673 17..594 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:24:12 Download gff for BS03619.5prime
Subject Subject Range Query Range Percent Splice Strand
SsRbeta-RA 98..673 17..594 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:24:12 Download gff for BS03619.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16129898..16130283 4..391 98 -> Plus
3L 16130506..16130706 392..594 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 15:29:27 Download gff for BS03619.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16122998..16123383 4..391 98 -> Plus
arm_3L 16123606..16123806 392..594 99   Plus

BS03619.3prime Sequence

603 bp (602 high quality bases) assembled on 2005-12-01

> BS03619.3prime
ATGGTCTAGAAAGCTTTTAGTGCTTCTTGTTCTTTCCAGAGCGCTCATAT
TTGCTCTTGGACTGGTGCCACAGAGCCAGAGGAATGGCCAGGGAAGGCAG
AGTCATCACGGCGAAGGCCACCCAGTCGAAGAAATGGGAGGAGAAGCGCT
TGTTGTACTCGTTCAGGTTGACAATTCCACCCTCACCGGGCTCAGAGCTG
ACCGCCAGTTGGAGCGTCTCCGACTCCTCGACAGCCTTGTAGGACACCTC
GGCGGCGGTGAAGTTGAAGTAGCCGAAGGCCTTGGGCCTCACCACCAGGA
CATGGGTGAAGTTGGTCTGGGGAGCGATCCTATCGACCACGGCGGTGGGC
TGTCCTCCGACAACGTCGAAGGCCTCCGGGTGGAAGCCGGAGTCTACCAA
TCGCACCTTGGTGGCGGCACCGCTGCCCACGTTGAAGATGGTGTAGCGTA
CCAACAGGTCGCTCTTCTCCACCAGGTACTTGTTCAGGATCTGCTTAGAG
ACCAGGAGACGGGCACGGGTCTCGTCTTCCGACAGGCAGGTGCTAAACAC
CGCGCACAGGGCGAACAAAGTCAGCAGGTGCTTGAACATGTCGACTGATA
ACT

BS03619.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG5474-PA 573 SsRbeta-RA 1..573 589..17 2865 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
SsRbeta-RA 950 CG5474-RA 98..670 589..17 2865 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16129909..16130283 589..215 1875 100 Minus
3L 28110227 3L 16130505..16130703 215..17 995 100 Minus
Blast to na_te.dros performed on 2015-02-03 13:53:03 has no hits.

BS03619.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:27 Download gff for BS03619.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5474-PA 1..573 17..589 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:43:45 Download gff for BS03619.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5474-PA 1..573 17..589 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:04:47 Download gff for BS03619.3prime
Subject Subject Range Query Range Percent Splice Strand
SsRbeta-RA 98..673 12..589 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:53:01 Download gff for BS03619.3prime
Subject Subject Range Query Range Percent Splice Strand
SsRbeta-RA 98..673 12..589 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:53:01 Download gff for BS03619.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16129898..16130283 215..602 98 -> Minus
3L 16130506..16130706 12..214 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:04:47 Download gff for BS03619.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16122998..16123383 215..602 98 -> Minus
arm_3L 16123606..16123806 12..214 99   Minus

BS03619.complete Sequence

605 bp (605 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634727

> BS03619.complete
GAAGTTATCAGTCGACATGTTCAAGCACCTGCTGACTTTGTTCGCCCTGT
GCGCGGTGTTTAGCACCTGCCTGTCGGAAGACGAGACCCGTGCCCGTCTC
CTGGTCTCTAAGCAGATCCTGAACAAGTACCTGGTGGAGAAGAGCGACCT
GTTGGTACGCTACACCATCTTCAACGTGGGCAGCGGTGCCGCCACCAAGG
TGCGATTGGTAGACTCCGGCTTCCACCCGGAGGCCTTCGACGTTGTCGGA
GGACAGCCCACCGCCGTGGTCGATAGGATCGCTCCCCAGACCAACTTCAC
CCATGTCCTGGTGGTGAGGCCCAAGGCCTTCGGCTACTTCAACTTCACCG
CCGCCGAGGTGTCCTACAAGGCTGTCGAGGAGTCGGAGACGCTCCAACTG
GCGGTCAGCTCTGAGCCCGGTGAGGGTGGAATTGTCAACCTGAACGAGTA
CAACAAGCGCTTCTCCTCCCATTTCTTCGACTGGGTGGCCTTCGCCGTGA
TGACTCTGCCTTCCCTGGCCATTCCTCTGGCTCTGTGGCACCAGTCCAAG
AGCAAATATGAGCGCTCTGGAAAGAACAAGAAGCACTAAAAGCTTTCTAG
ACCAT

BS03619.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
SsRbeta-RA 573 CG5474-PA 1..573 17..589 2865 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
SsRbeta-RA 950 CG5474-RA 98..670 17..589 2865 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16129909..16130283 17..391 1875 100 Plus
3L 28110227 3L 16130505..16130703 391..589 995 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:57:42 has no hits.

BS03619.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:29:06 Download gff for BS03619.complete
Subject Subject Range Query Range Percent Splice Strand
SsRbeta-RA 1..573 17..589 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:12:23 Download gff for BS03619.complete
Subject Subject Range Query Range Percent Splice Strand
SsRbeta-RA 75..650 17..594 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:32 Download gff for BS03619.complete
Subject Subject Range Query Range Percent Splice Strand
SsRbeta-RA 103..668 22..587 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:29:06 Download gff for BS03619.complete
Subject Subject Range Query Range Percent Splice Strand
SsRbeta-RA 75..650 17..594 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:50 Download gff for BS03619.complete
Subject Subject Range Query Range Percent Splice Strand
SsRbeta-RA 103..668 22..587 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:50 Download gff for BS03619.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16129914..16130283 22..391 100 -> Plus
3L 16130506..16130701 392..587 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:32 Download gff for BS03619.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16123014..16123383 22..391 100 -> Plus
arm_3L 16123606..16123801 392..587 100   Plus

BS03619.pep Sequence

Translation from 16 to 588

> BS03619.pep
MFKHLLTLFALCAVFSTCLSEDETRARLLVSKQILNKYLVEKSDLLVRYT
IFNVGSGAATKVRLVDSGFHPEAFDVVGGQPTAVVDRIAPQTNFTHVLVV
RPKAFGYFNFTAAEVSYKAVEESETLQLAVSSEPGEGGIVNLNEYNKRFS
SHFFDWVAFAVMTLPSLAIPLALWHQSKSKYERSGKNKKH*

BS03619.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:37
Subject Length Description Subject Range Query Range Score Percent Strand
SsRbeta-PA 190 CG5474-PA 1..190 1..190 974 100 Plus