Clone Sequence Records
BS03621.complete Sequence
2303 bp assembled on 2009-12-07
GenBank Submission: KX798913
> BS03621.complete
GAAGTTATCAGTCGACATGACCTCCATTATCAAGCTGCACACTATATCTG
GGGCGATGGACGAGTCCCCGCCATGCTATATCCTACAGATAGACGATGTG
CGGATATTACTTGACTGCGGATGGGACGAAAAGTTCGATGCCAACTTTAT
CAAGGAACTGAAGAGGCAGGTGCACACCCTGGACGCCGTGCTGCTATCCC
ATCCGGATGCATATCATCTTGGAGCCCTGCCATACTTGGTGGGCAAGCTG
GGGCTCAATTGCCCCATCTACGCCACCATTCCCGTGTTCAAAATGGGTCA
AATGTTTATGTATGACCTTTACATGTCGCACTTCAATATGGGAGACTTCG
ATCTATTTTCGCTGGACGACGTGGACACGGCTTTCGAAAAGATAACCCAG
TTGAAATACAACCAAACAGTTTCACTGAAGGACAAAGGATATGGAATATC
CATTACGCCTTTGAACGCTGGACACATGATCGGCGGCACCATCTGGAAGA
TCGTCAAGGTGGGCGAGGAGGATATTGTGTACGCCACCGACTTCAACCAT
AAGAAGGAGCGCCACTTAAGTGGCTGCGAGCTGGACAGGCTGCAAAGACC
TTCGCTGCTCATTACCGACGCCTACAACGCACAGTACCAGCAGGCCAGAA
GGAGGGCCCGCGATGAAAAGCTAATGACCAACATCCTGCAAACGGTGCGT
AACAACGGCAATGTCCTGATAGCCGTGGATACGGCAGGACGAGTCCTGGA
GTTGGCCCACATGCTGGACCAGCTGTGGAAGAACAAGGAATCTGGGCTAA
TGGCCTACTCCCTGGCCCTTCTTAACAATGTGAGCTACAACGTGATTGAG
TTCGCCAAGTCGCAGATAGAATGGATGAGTGACAAGCTCACGAAGGCTTT
CGAAGGTGCCCGCAACAATCCCTTTCAGTTCAAGCACATCCAGCTGTGCC
ATTCACTGGCGGACGTCTATAAATTGCCCGCTGGTCCAAAAGTGGTGTTG
GCCAGTACCCCAGATCTGGAGAGCGGATTCACGAGGGATCTCTTCGTGCA
ATGGGCCAGCAATGCCAACAATAGCATAATCCTTACTACTCGTACGTCTC
CCGGCACTTTAGCCATGGAACTGGTGGAGAACTGCGCACCGGGCAAGCAA
ATCGAATTGGACGTCAGGCGAAGAGTTGACTTAGAAGGAGCTGAGTTGGA
GGAGTACCTACGCACACAGGGCGAGAAACTTAATCCCCTTATCGTAAAGC
CCGATGTGGAGGAAGAGAGCAGTTCCGAGTCCGAGGACGACATCGAGATG
AGCGTCATCACGGGCAAGCATGATATTGTGGTCAGACCGGAGGGTCGCCA
TCACTCCGGTTTTTTCAAGTCCAACAAACGACACCACGTGATGTTCCCCT
ATCACGAGGAAAAGGTGAAGTGCGATGAGTATGGGGAGATCATCAATCTA
GACGACTACCGGATTGCGGATGCGACAGGCTATGAGTTTGTACCTATGGA
GGAGCAAAACAAGGAGAATGTTAAAAAGGAAGAACCGGGCATAGGAGCAG
AACAACAGGCTAACGGAGGAATCGTCGACAATGATGTTCAGTTGCTGGAG
AAGCCCACCAAGCTGATAAGCCAACGCAAAACAATCGAGGTGAATGCCCA
AGTCCAGAGGATCGATTTCGAAGGTCGCTCTGATGGCGAGTCCATGCTAA
AGATCCTCTCCCAGTTGAGGCCACGAAGGGTTATCGTCATACACGGCACT
GCCGAAGGCACACAAGTGGTGGCCAGGCACTGCGAACAGAATGTCGGTGC
GCGCGTTTTTACTCCGCAGAAGGGGGAAATCATTGATGTCACCAGTGAGA
TTCACATCTATCAGGTACGCCTGACGGAAGGACTTGTCTCCCAGCTGCAG
TTCCAAAAGGGCAAGGACGCGGAGGTGGCGTGGGTGGATGGTCGCCTGGG
CATGCGGGTGAAGGCCATCGAAGCACCCATGGACGTAACTGTGGAGCAGG
ACGCTTCCGTGCAAGAAGGCAAGACATTGACTCTTGAAACACTGGCGGAC
GATGAGATTCCTATCCACAACTCAGTGCTCATTAACGAGCTGAAACTGTC
CGACTTTAAGCAGACTCTCATGCGTAATAACATCAACTCGGAGTTCTCCG
GCGGCGTGCTCTGGTGCAGCAACGGAACTCTGGCCTTGAGGCGAGTGGAT
GCCGGCAAGGTAGCCATGGAGGGATGCTTATCCGAGGAGTACTACAAGAT
CAGGGAGTTGCTGTACGAGCAGTATGCGATCGTTTAAAAGCTTTCTAGAC
CAT
BS03621.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:12:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpsf100-RA | 2271 | CG1957-PA | 1..2271 | 17..2287 | 11355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:12:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpsf100-RA | 2431 | CG1957-RA | 91..2361 | 17..2287 | 11355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:12:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29034869..29036992 | 164..2287 | 10620 | 100 | Plus |
| 3R | 32079331 | 3R | 29034663..29034812 | 17..166 | 750 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:12:55 has no hits.
BS03621.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:00 Download gff for
BS03621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1957-RA | 61..2329 | 17..2285 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:08:50 Download gff for
BS03621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpsf100-RA | 91..2359 | 17..2285 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:16 Download gff for
BS03621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1957-RA | 61..2329 | 17..2285 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:28 Download gff for
BS03621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpsf100-RA | 91..2359 | 17..2285 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:28 Download gff for
BS03621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29034663..29034811 | 17..165 | 100 | -> | Plus |
| 3R | 29034871..29036990 | 166..2285 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:08:50 Download gff for
BS03621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24860385..24860533 | 17..165 | 100 | -> | Plus |
| arm_3R | 24860593..24862712 | 166..2285 | 100 | | Plus |
BS03621.3prime Sequence
893 bp (885 high quality bases) assembled on 2005-12-01
> BS03621.3prime
ATGGTCTAGAAAGCTTTTAAACGATCGCATACTGCTCGTACAGCAACTCC
CTGATCTTGTAGTACTCCTCGGATAAGCATCCCTCCATGGCTACCTTGCC
GGCATCCACTCGCCTCAAGGCCAGAGTTCCGTTGCTGCACCAGAGCACGC
CGCCGGAGAACTCCGAGTTGATGTTATTACGCATGAGAGTCTGCTTAAAG
TCGGACAGTTTCAGCTCGTTAATGAGCACTGAGTTGTGGATAGGAATCTC
ATCGTCCGCCAGTGTTTCAAGAGTCAATGTCTTGCCTTCTTGCACGGAAG
CGTCCTGCTCCACAGTTACGTCCATGGGTGCTTCGATGGCCTTCACCCGC
ATGCCCAGGCGACCATCCACCCACGCCACCTCCGCGTCCTTGCCCTTTTG
GAACTGCAGCTGGGAGACAAGTCCTTCCGTCAGGCGTACCTGATAGATGT
GAATCTCACTGGTGACATCAATGATTTCCCCCTTCTGCGGAGTAAAAACG
CGCGCACCGACATTCTGTTCGCAGTGCCTGGCCACCACTTGTGTGCCTTC
GGCAGTGCCGTGTATGACGATAACCCTTCGTGGCCTCAACTGGGAGAGGA
TCTTTAGCATGGACTCGCCATCAGAGCGACCTTCGAAATCGATCCTCTGG
ACTTGGGCATTCACCTCGATTGTTTTGCGTTGGCTTATCAGCTTGGTGGG
CTTCTCCAGCAACTGAACATCATTGTCGACGATTCCTCCGTTAGCCTGTT
GTTCTGCTCCTATGCCCGGTTCTTCCTTTTTAACATTCTCCTTGTTTTGC
TCCTCCATAGGTACAAACTCATAGCCTGTCGCATCCGCAATCCGGTAGTC
GTCTAGATTGATGATCTCCCCATACTCATCGCACTTCACCTTT
BS03621.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1957-PA | 2271 | CG1957-RA | 1395..2271 | 893..17 | 4385 | 100 | Minus |
| CG1957-PB | 1995 | CG1957-RB | 1119..1995 | 893..17 | 4385 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:09:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpsf100-RA | 2431 | CG1957-RA | 1485..2361 | 893..17 | 4385 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:09:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29036116..29036992 | 893..17 | 4385 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:09:07 has no hits.
BS03621.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:31 Download gff for
BS03621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1957-PA | 1395..2271 | 17..893 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:43:49 Download gff for
BS03621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1957-PB | 1119..1995 | 17..893 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:11:26 Download gff for
BS03621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpsf100-RA | 1485..2365 | 11..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:14:08 Download gff for
BS03621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpsf100-RA | 1485..2365 | 11..893 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:14:08 Download gff for
BS03621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29036116..29036996 | 11..893 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:11:26 Download gff for
BS03621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24861838..24862718 | 11..893 | 99 | | Minus |
BS03621.5prime Sequence
902 bp (812 high quality bases) assembled on 2005-12-01
> BS03621.5prime
GAAGTTATCAGTCGACATGACCTCCATTATCAAGCTGCACACTATATCTG
GGGCGATGGACGAGTCCCCGCCATGCTATATCCTACAGATAGACGATGTG
CGGATATTACTTGACTGCGGATGGGACGAAAAGTTCGATGCCAACTTTAT
CAAGGAACTGAAGAGGCAGGTGCACACCCTGGACGCCGTGCTGCTATCCC
ATCCGGATGCATATCATCTTGGAGCCCTGCCATACTTGGTGGGCAAGCTG
GGGCTCAATTGCCCCATCTACGCCACCATTCCCGTGTTCAAAATGGGTCA
AATGTTTATGTATGACCTTTACATGTCGCACTTCAATATGGGAGACTTCG
ATCTATTTTCGCTGGACGACGTGGACACGGCTTTCGAAAAGATAACCCAG
TTGAAATACAACCAAACAGTTTCACTGAAGGACAAAGGATATGGAATATC
CATTACGCCTTTGAACGCTGGACACATGATCGGCGGCACCATCTGGAAGA
TCGTCAAGGTGGGCGAGGAGGATATTGTGTACGCCACCGACTTCAACCAT
AAGAAGGAGCGCCACTTAAGTGGCTGCGAGCTGGACAGGCTGCAAAGACC
TTCGCTGCTCATTACCGACGCCTACAACGCACAGTACCAGCAGGCCAGAA
GGAGGGCCCGCGATGAAAAGCTAATGACCAACATCCTGCAAACGGTGCGT
AACAACGGCAATGTCCTGATAGCCGTGGATACGGCAGGACGAGTCCTGGA
GTTGGCCCACATGCTGGACCAGCTGTGGAAGAACAAGGAATCTGGGCTAA
TGGCCTACTCCCTGGCCCTTCTTAACAATGTGAGCTACAACGTGATTGAG
TTCGCCAAGTCGCAGATAGAATGGATGAGTGACAAGCTCACGAAGGCTTT
CG
BS03621.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1957-PA | 2271 | CG1957-RA | 1..886 | 17..902 | 4430 | 100 | Plus |
| CG1957-PB | 1995 | CG1957-RB | 1..610 | 293..902 | 3050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:35:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpsf100-RA | 2431 | CG1957-RA | 91..976 | 17..902 | 4430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:35:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29034869..29035607 | 164..902 | 3695 | 100 | Plus |
| 3R | 32079331 | 3R | 29034663..29034812 | 17..166 | 750 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 11:35:49 has no hits.
BS03621.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:32 Download gff for
BS03621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1957-PA | 1..886 | 17..902 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:43:51 Download gff for
BS03621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1957-PA | 1..886 | 17..902 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:51:44 Download gff for
BS03621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpsf100-RA | 91..976 | 17..902 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:34:38 Download gff for
BS03621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpsf100-RA | 91..976 | 17..902 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:34:38 Download gff for
BS03621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29034663..29034811 | 17..165 | 100 | -> | Plus |
| 3R | 29034871..29035607 | 166..902 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:51:44 Download gff for
BS03621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24860385..24860533 | 17..165 | 100 | -> | Plus |
| arm_3R | 24860593..24861329 | 166..902 | 100 | | Plus |
BS03621.pep Sequence
Translation from 16 to 2286
> BS03621.pep
MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDANFIKELKR
QVHTLDAVLLSHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYD
LYMSHFNMGDFDLFSLDDVDTAFEKITQLKYNQTVSLKDKGYGISITPLN
AGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSGCELDRLQRPSLLIT
DAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLELAHML
DQLWKNKESGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARN
NPFQFKHIQLCHSLADVYKLPAGPKVVLASTPDLESGFTRDLFVQWASNA
NNSIILTTRTSPGTLAMELVENCAPGKQIELDVRRRVDLEGAELEEYLRT
QGEKLNPLIVKPDVEEESSSESEDDIEMSVITGKHDIVVRPEGRHHSGFF
KSNKRHHVMFPYHEEKVKCDEYGEIINLDDYRIADATGYEFVPMEEQNKE
NVKKEEPGIGAEQQANGGIVDNDVQLLEKPTKLISQRKTIEVNAQVQRID
FEGRSDGESMLKILSQLRPRRVIVIHGTAEGTQVVARHCEQNVGARVFTP
QKGEIIDVTSEIHIYQVRLTEGLVSQLQFQKGKDAEVAWVDGRLGMRVKA
IEAPMDVTVEQDASVQEGKTLTLETLADDEIPIHNSVLINELKLSDFKQT
LMRNNINSEFSGGVLWCSNGTLALRRVDAGKVAMEGCLSEEYYKIRELLY
EQYAIV*
BS03621.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:47:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpsf100-PA | 756 | CG1957-PA | 1..756 | 1..756 | 3911 | 100 | Plus |
| IntS11-PA | 597 | CG1972-PA | 4..383 | 5..392 | 359 | 26.5 | Plus |
| Cpsf73-PA | 684 | CG7698-PA | 15..370 | 2..366 | 301 | 24.4 | Plus |
| IntS9-PA | 654 | CG5222-PA | 1..428 | 5..362 | 202 | 22.5 | Plus |
