Clone BS03624 Report

Search the DGRC for BS03624

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:36
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptRpn6-RB
Protein status:BS03624.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03624.3prime Sequence

945 bp (790 high quality bases) assembled on 2005-12-01

> BS03624.3prime
ATGGTCTAGAAAGCTTTTACGACAGCTTCTTAGCCTTCTGGTACAGTGTG
TCCACCACCTTACCCATACTTTGTATGGTTTCCAGCACGCGTTCATAGGT
CTTGTCCACGGGCGTCTCTTCGAAAACAATCAGTACTCCCTCACCCTGAT
CCAGAATGCCGCTGAACTTTTTGTCCAGGATCATTTGGGACAGCTTCTTT
TCCACCTGCGGCATGGGCAGCTGAATGCTCTCGGCAACATGGGCGACCTG
CACACGAGAGTAGGGTTCAATGATGCGGCACAAGTTTTGCTCCAACATGG
TGTCGTATAACGTGCCCAAATGCGCCTGCACAATCACATCCTCGGCGAGC
TCCTTTTTGTATTCCTTGAGGGCAGCCTGGAAGTCGGCCAGGGAACGTTT
GTGTGAAGCCTCAGCCACTGATTTCATAGCATCTATATCGCGGCCCGAAT
AGGTAATAGCCAGCTTTCCACTGACGAGCTGGTTGACATCATCGGACTGT
CCCAACATGATTTTGCACAGCAACATGTATTTAAGCGAGGTCAAGGCCTT
GACGCTGTCCACGCTGTCGAATCCTTCAAAGGCCTCGTAGAAATAGGAGA
ATGCGGTCTTAAAGTCACGCTCATCAGCCGCATGTAGGATGCCGGACTGA
AGATCCAGTGCGCCTTGCACCTTTGGCGGACAGTAGATAGCATTGGCCGT
GGTGCGGGCTGAGGTGAGGGCGGCCCTAGCCTTGGGCAGGTTGCTCAGTG
CGTGATAGGTTTTGCTCTCCAGCAGCTGCACTTCCACCAGCAGATTCTTG
TCATCCAGCTTTTTCAGCTCGCGCAGCAATTGGGCACCCAGAGCCAAGGC
CTCCGTGTACAAAGCAGTATCAAAATATAAAGCAATCAGACGAGCTTCCA
GCGATTGGCGAAAAAATGTGCGCTTCTCCTGTTTGGCCCACTCAA

BS03624.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10149-PA 1320 Rpn6-RA 392..1320 945..17 4595 99.7 Minus
CG10149-PB 1269 Rpn6-RB 341..1269 945..17 4595 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn6-RC 1662 CG10149-RC 414..1342 945..17 4615 99.8 Minus
Rpn6-RB 1827 CG10149-RB 579..1507 945..17 4615 99.8 Minus
Rpn6-RA 1612 CG10149-RA 466..1394 945..17 4615 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14751144..14751629 460..945 2400 99.6 Plus
2R 25286936 2R 14750486..14750720 17..251 1175 100 Plus
2R 25286936 2R 14750781..14750996 246..461 1080 100 Plus
Blast to na_te.dros performed on 2015-02-12 18:07:55 has no hits.

BS03624.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:35 Download gff for BS03624.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpn6-PB 343..1269 17..943 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:43:55 Download gff for BS03624.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10149-PB 343..1269 17..943 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:11:19 Download gff for BS03624.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpn6-RA 468..1396 13..943 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:08:17 Download gff for BS03624.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpn6-RA 468..1396 13..943 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:08:17 Download gff for BS03624.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14750484..14750716 13..247 99 <- Plus
2R 14750783..14750995 248..460 100 <- Plus
2R 14751145..14751627 461..943 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:11:19 Download gff for BS03624.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10637989..10638221 13..247 99 <- Plus
arm_2R 10638288..10638500 248..460 100 <- Plus
arm_2R 10638650..10639132 461..943 99   Plus

BS03624.5prime Sequence

814 bp (813 high quality bases) assembled on 2005-11-29

> BS03624.5prime
GAAGTTATCAGTCGACATGGCCGGAGCAACACTTTTCGAGCGTGCCCAGG
CATTGTCCAGCGTGAATCGCGAGGAGCAGGATAGTTCGCTGCTGAACAAA
CTGGTCCGCGACCAGGAGGGCGCCGAGAACGATGAGGAGCGCATCCGAAT
CAAGGAGCAGGGCATTCTGCAGCAGGGCGAGCTCTACAAGCAGGAGGGCA
AGGCCAAGGAGCTGGCCGATCTCATCAAGGTGACGCGTCCGTTCCTCAGC
TCGATCAGCAAGGCCAAGGCGGCCAAGCTGGTGCGTTCGCTGGTGGACAT
GTTCCTGGACATGGACGCGGGCACAGGCATTGAGGTTCAATTGTGTAAAG
ACTGCATTGAGTGGGCCAAACAGGAGAAGCGCACATTTCTTCGCCAATCG
CTGGAAGCTCGTCTGATTGCCTTATATTTTGATACTGCTTTGTACACGGA
GGCCTTGGCTCTGGGTGCCCAATTGCTGCGCGAGCTGAAAAAGCTGGATG
ACAAGAATCTGCTGGTGGAAGTGCAGCTGCTGGAGAGCAAAACCTATCAC
GCACTGAGCAACCTGCCCAAGGCTAGGGCCGCCCTCACCTCAGCCCGCAC
CACGGCCAATGCTATCTACTGTCCGCCAAAGGTGCAAGGCGCACTGGATC
TTCAGTCCGGCATCCTACATGCGGCTGATGAGCGTGACTTTAAGACCGCA
TTCTCCTATTTCTACGAGGCCTTTGAAGGATTCGACAGCGTGGACAGCGT
CAAGGCCTTGACCTCGCTTAAATACATGTTGCTGTGCAAAATCATGTTGG
GACAGTCCGATGAT

BS03624.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10149-PA 1320 Rpn6-RA 52..849 17..814 3990 100 Plus
CG10149-PB 1269 Rpn6-RB 1..798 17..814 3990 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:20:19
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn6-RC 1662 CG10149-RC 74..871 17..814 3990 100 Plus
Rpn6-RB 1827 CG10149-RB 239..1036 17..814 3990 100 Plus
Rpn6-RA 1612 CG10149-RA 126..923 17..814 3990 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:20:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14751172..14751653 814..333 2410 100 Minus
2R 25286936 2R 14751714..14752033 336..17 1600 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:20:16 has no hits.

BS03624.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:36 Download gff for BS03624.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpn6-PB 1..798 17..814 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:43:56 Download gff for BS03624.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10149-PB 1..798 17..814 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:19:22 Download gff for BS03624.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpn6-RA 119..923 8..814 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:37:36 Download gff for BS03624.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpn6-RA 119..923 8..814 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:37:36 Download gff for BS03624.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14751172..14751651 335..814 100 <- Minus
2R 14751716..14752047 5..334 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:19:22 Download gff for BS03624.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10638677..10639156 335..814 100 <- Minus
arm_2R 10639221..10639552 5..334 98   Minus

BS03624.complete Sequence

1301 bp (1301 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ634728

> BS03624.complete
GAAGTTATCAGTCGACATGGCCGGAGCAACACTTTTCGAGCGTGCCCAGG
CATTGTCCAGCGTGAATCGCGAGGAGCAGGATAGTTCGCTGCTGAACAAA
CTGGTCCGCGACCAGGAGGGCGCCGAGAACGATGAGGAGCGCATCCGAAT
CAAGGAGCAGGGCATTCTGCAGCAGGGCGAGCTCTACAAGCAGGAGGGCA
AGGCCAAGGAGCTGGCCGATCTCATCAAGGTGACGCGTCCGTTCCTCAGC
TCGATCAGCAAGGCCAAGGCGGCCAAGCTGGTGCGTTCGCTGGTGGACAT
GTTCCTGGACATGGACGCGGGCACAGGCATTGAGGTTCAATTGTGTAAAG
ACTGCATTGAGTGGGCCAAACAGGAGAAGCGCACATTTCTTCGCCAATCG
CTGGAAGCTCGTCTGATTGCCTTATATTTTGATACTGCTTTGTACACGGA
GGCCTTGGCTCTGGGTGCCCAATTGCTGCGCGAGCTGAAAAAGCTGGATG
ACAAGAATCTGCTGGTGGAAGTGCAGCTGCTGGAGAGCAAAACCTATCAC
GCACTGAGCAACCTGCCCAAGGCTAGGGCCGCCCTCACCTCAGCCCGCAC
CACGGCCAATGCTATCTACTGTCCGCCAAAGGTGCAAGGCGCACTGGATC
TTCAGTCCGGCATCCTACATGCGGCTGATGAGCGTGACTTTAAGACCGCA
TTCTCCTATTTCTACGAGGCCTTTGAAGGATTCGACAGCGTGGACAGCGT
CAAGGCCTTGACCTCGCTTAAATACATGTTGCTGTGCAAAATCATGTTGG
GACAGTCCGATGATGTCAACCAGCTCGTCAGTGGAAAGCTGGCTATTACC
TATTCGGGCCGCGATATAGATGCTATGAAATCAGTGGCTGAGGCTTCACA
CAAACGTTCCCTGGCCGACTTCCAGGCTGCCCTCAAGGAATACAAAAAGG
AGCTCGCCGAGGATGTGATTGTGCAGGCGCATTTGGGCACGTTATACGAC
ACCATGTTGGAGCAAAACTTGTGCCGCATCATTGAACCCTACTCTCGTGT
GCAGGTCGCCCATGTTGCCGAGAGCATTCAGCTGCCCATGCCGCAGGTGG
AAAAGAAGCTGTCCCAAATGATCCTGGACAAAAAGTTCAGCGGCATTCTG
GATCAGGGTGAGGGAGTACTGATTGTTTTCGAAGAGACGCCCGTGGACAA
GACCTATGAACGCGTGCTGGAAACCATACAAAGTATGGGTAAGGTGGTGG
ACACACTGTACCAGAAGGCTAAGAAGCTGTCGTAAAAGCTTTCTAGACCA
T

BS03624.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn6-RC 1269 CG10149-PC 1..1269 17..1285 6345 100 Plus
Rpn6-RB 1269 CG10149-PB 1..1269 17..1285 6345 100 Plus
Rpn6-RA 1320 CG10149-PA 52..1320 17..1285 6345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:25:54
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn6-RC 1662 CG10149-RC 74..1342 17..1285 6345 100 Plus
Rpn6-RB 1827 CG10149-RB 239..1507 17..1285 6345 100 Plus
Rpn6-RA 1612 CG10149-RA 126..1394 17..1285 6345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14751144..14751653 842..333 2550 100 Minus
2R 25286936 2R 14751714..14752033 336..17 1600 100 Minus
2R 25286936 2R 14750486..14750720 1285..1051 1175 100 Minus
2R 25286936 2R 14750781..14750996 1056..841 1080 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:25:52 has no hits.

BS03624.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:34 Download gff for BS03624.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn6-RB 1..1269 17..1285 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:18:01 Download gff for BS03624.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn6-RB 272..1556 5..1289 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:37 Download gff for BS03624.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn6-RA 126..1392 17..1283 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:34 Download gff for BS03624.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn6-RB 272..1556 5..1289 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:31 Download gff for BS03624.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn6-RA 126..1392 17..1283 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:31 Download gff for BS03624.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14750488..14750716 1055..1283 100 <- Minus
2R 14750783..14750995 842..1054 100 <- Minus
2R 14751145..14751651 335..841 100 <- Minus
2R 14751716..14752033 17..334 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:37 Download gff for BS03624.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10637993..10638221 1055..1283 100 <- Minus
arm_2R 10638288..10638500 842..1054 100 <- Minus
arm_2R 10638650..10639156 335..841 100 <- Minus
arm_2R 10639221..10639538 17..334 100   Minus

BS03624.pep Sequence

Translation from 16 to 1284

> BS03624.pep
MAGATLFERAQALSSVNREEQDSSLLNKLVRDQEGAENDEERIRIKEQGI
LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMD
AGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALG
AQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAI
YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTS
LKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLA
DFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHV
AESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVDKTYERV
LETIQSMGKVVDTLYQKAKKLS*

BS03624.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:48
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn6-PC 422 CG10149-PC 1..422 1..422 2086 100 Plus
Rpn6-PB 422 CG10149-PB 1..422 1..422 2086 100 Plus
Rpn6-PA 439 CG10149-PA 18..439 1..422 2086 100 Plus
alien-PD 444 CG9556-PD 41..410 15..385 233 22.3 Plus
alien-PE 444 CG9556-PE 41..410 15..385 233 22.3 Plus