Clone Sequence Records
BS03624.3prime Sequence
945 bp (790 high quality bases) assembled on 2005-12-01
> BS03624.3prime
ATGGTCTAGAAAGCTTTTACGACAGCTTCTTAGCCTTCTGGTACAGTGTG
TCCACCACCTTACCCATACTTTGTATGGTTTCCAGCACGCGTTCATAGGT
CTTGTCCACGGGCGTCTCTTCGAAAACAATCAGTACTCCCTCACCCTGAT
CCAGAATGCCGCTGAACTTTTTGTCCAGGATCATTTGGGACAGCTTCTTT
TCCACCTGCGGCATGGGCAGCTGAATGCTCTCGGCAACATGGGCGACCTG
CACACGAGAGTAGGGTTCAATGATGCGGCACAAGTTTTGCTCCAACATGG
TGTCGTATAACGTGCCCAAATGCGCCTGCACAATCACATCCTCGGCGAGC
TCCTTTTTGTATTCCTTGAGGGCAGCCTGGAAGTCGGCCAGGGAACGTTT
GTGTGAAGCCTCAGCCACTGATTTCATAGCATCTATATCGCGGCCCGAAT
AGGTAATAGCCAGCTTTCCACTGACGAGCTGGTTGACATCATCGGACTGT
CCCAACATGATTTTGCACAGCAACATGTATTTAAGCGAGGTCAAGGCCTT
GACGCTGTCCACGCTGTCGAATCCTTCAAAGGCCTCGTAGAAATAGGAGA
ATGCGGTCTTAAAGTCACGCTCATCAGCCGCATGTAGGATGCCGGACTGA
AGATCCAGTGCGCCTTGCACCTTTGGCGGACAGTAGATAGCATTGGCCGT
GGTGCGGGCTGAGGTGAGGGCGGCCCTAGCCTTGGGCAGGTTGCTCAGTG
CGTGATAGGTTTTGCTCTCCAGCAGCTGCACTTCCACCAGCAGATTCTTG
TCATCCAGCTTTTTCAGCTCGCGCAGCAATTGGGCACCCAGAGCCAAGGC
CTCCGTGTACAAAGCAGTATCAAAATATAAAGCAATCAGACGAGCTTCCA
GCGATTGGCGAAAAAATGTGCGCTTCTCCTGTTTGGCCCACTCAA
BS03624.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10149-PA | 1320 | Rpn6-RA | 392..1320 | 945..17 | 4595 | 99.7 | Minus |
CG10149-PB | 1269 | Rpn6-RB | 341..1269 | 945..17 | 4595 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:07:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn6-RC | 1662 | CG10149-RC | 414..1342 | 945..17 | 4615 | 99.8 | Minus |
Rpn6-RB | 1827 | CG10149-RB | 579..1507 | 945..17 | 4615 | 99.8 | Minus |
Rpn6-RA | 1612 | CG10149-RA | 466..1394 | 945..17 | 4615 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:07:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14751144..14751629 | 460..945 | 2400 | 99.6 | Plus |
2R | 25286936 | 2R | 14750486..14750720 | 17..251 | 1175 | 100 | Plus |
2R | 25286936 | 2R | 14750781..14750996 | 246..461 | 1080 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:07:55 has no hits.
BS03624.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:35 Download gff for
BS03624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn6-PB | 343..1269 | 17..943 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:43:55 Download gff for
BS03624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10149-PB | 343..1269 | 17..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:11:19 Download gff for
BS03624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn6-RA | 468..1396 | 13..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:08:17 Download gff for
BS03624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn6-RA | 468..1396 | 13..943 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:08:17 Download gff for
BS03624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14750484..14750716 | 13..247 | 99 | <- | Plus |
2R | 14750783..14750995 | 248..460 | 100 | <- | Plus |
2R | 14751145..14751627 | 461..943 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:11:19 Download gff for
BS03624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10637989..10638221 | 13..247 | 99 | <- | Plus |
arm_2R | 10638288..10638500 | 248..460 | 100 | <- | Plus |
arm_2R | 10638650..10639132 | 461..943 | 99 | | Plus |
BS03624.5prime Sequence
814 bp (813 high quality bases) assembled on 2005-11-29
> BS03624.5prime
GAAGTTATCAGTCGACATGGCCGGAGCAACACTTTTCGAGCGTGCCCAGG
CATTGTCCAGCGTGAATCGCGAGGAGCAGGATAGTTCGCTGCTGAACAAA
CTGGTCCGCGACCAGGAGGGCGCCGAGAACGATGAGGAGCGCATCCGAAT
CAAGGAGCAGGGCATTCTGCAGCAGGGCGAGCTCTACAAGCAGGAGGGCA
AGGCCAAGGAGCTGGCCGATCTCATCAAGGTGACGCGTCCGTTCCTCAGC
TCGATCAGCAAGGCCAAGGCGGCCAAGCTGGTGCGTTCGCTGGTGGACAT
GTTCCTGGACATGGACGCGGGCACAGGCATTGAGGTTCAATTGTGTAAAG
ACTGCATTGAGTGGGCCAAACAGGAGAAGCGCACATTTCTTCGCCAATCG
CTGGAAGCTCGTCTGATTGCCTTATATTTTGATACTGCTTTGTACACGGA
GGCCTTGGCTCTGGGTGCCCAATTGCTGCGCGAGCTGAAAAAGCTGGATG
ACAAGAATCTGCTGGTGGAAGTGCAGCTGCTGGAGAGCAAAACCTATCAC
GCACTGAGCAACCTGCCCAAGGCTAGGGCCGCCCTCACCTCAGCCCGCAC
CACGGCCAATGCTATCTACTGTCCGCCAAAGGTGCAAGGCGCACTGGATC
TTCAGTCCGGCATCCTACATGCGGCTGATGAGCGTGACTTTAAGACCGCA
TTCTCCTATTTCTACGAGGCCTTTGAAGGATTCGACAGCGTGGACAGCGT
CAAGGCCTTGACCTCGCTTAAATACATGTTGCTGTGCAAAATCATGTTGG
GACAGTCCGATGAT
BS03624.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10149-PA | 1320 | Rpn6-RA | 52..849 | 17..814 | 3990 | 100 | Plus |
CG10149-PB | 1269 | Rpn6-RB | 1..798 | 17..814 | 3990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:20:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn6-RC | 1662 | CG10149-RC | 74..871 | 17..814 | 3990 | 100 | Plus |
Rpn6-RB | 1827 | CG10149-RB | 239..1036 | 17..814 | 3990 | 100 | Plus |
Rpn6-RA | 1612 | CG10149-RA | 126..923 | 17..814 | 3990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:20:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14751172..14751653 | 814..333 | 2410 | 100 | Minus |
2R | 25286936 | 2R | 14751714..14752033 | 336..17 | 1600 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:20:16 has no hits.
BS03624.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:36 Download gff for
BS03624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn6-PB | 1..798 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:43:56 Download gff for
BS03624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10149-PB | 1..798 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:19:22 Download gff for
BS03624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn6-RA | 119..923 | 8..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:37:36 Download gff for
BS03624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn6-RA | 119..923 | 8..814 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:37:36 Download gff for
BS03624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14751172..14751651 | 335..814 | 100 | <- | Minus |
2R | 14751716..14752047 | 5..334 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:19:22 Download gff for
BS03624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10638677..10639156 | 335..814 | 100 | <- | Minus |
arm_2R | 10639221..10639552 | 5..334 | 98 | | Minus |
BS03624.complete Sequence
1301 bp (1301 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ634728
> BS03624.complete
GAAGTTATCAGTCGACATGGCCGGAGCAACACTTTTCGAGCGTGCCCAGG
CATTGTCCAGCGTGAATCGCGAGGAGCAGGATAGTTCGCTGCTGAACAAA
CTGGTCCGCGACCAGGAGGGCGCCGAGAACGATGAGGAGCGCATCCGAAT
CAAGGAGCAGGGCATTCTGCAGCAGGGCGAGCTCTACAAGCAGGAGGGCA
AGGCCAAGGAGCTGGCCGATCTCATCAAGGTGACGCGTCCGTTCCTCAGC
TCGATCAGCAAGGCCAAGGCGGCCAAGCTGGTGCGTTCGCTGGTGGACAT
GTTCCTGGACATGGACGCGGGCACAGGCATTGAGGTTCAATTGTGTAAAG
ACTGCATTGAGTGGGCCAAACAGGAGAAGCGCACATTTCTTCGCCAATCG
CTGGAAGCTCGTCTGATTGCCTTATATTTTGATACTGCTTTGTACACGGA
GGCCTTGGCTCTGGGTGCCCAATTGCTGCGCGAGCTGAAAAAGCTGGATG
ACAAGAATCTGCTGGTGGAAGTGCAGCTGCTGGAGAGCAAAACCTATCAC
GCACTGAGCAACCTGCCCAAGGCTAGGGCCGCCCTCACCTCAGCCCGCAC
CACGGCCAATGCTATCTACTGTCCGCCAAAGGTGCAAGGCGCACTGGATC
TTCAGTCCGGCATCCTACATGCGGCTGATGAGCGTGACTTTAAGACCGCA
TTCTCCTATTTCTACGAGGCCTTTGAAGGATTCGACAGCGTGGACAGCGT
CAAGGCCTTGACCTCGCTTAAATACATGTTGCTGTGCAAAATCATGTTGG
GACAGTCCGATGATGTCAACCAGCTCGTCAGTGGAAAGCTGGCTATTACC
TATTCGGGCCGCGATATAGATGCTATGAAATCAGTGGCTGAGGCTTCACA
CAAACGTTCCCTGGCCGACTTCCAGGCTGCCCTCAAGGAATACAAAAAGG
AGCTCGCCGAGGATGTGATTGTGCAGGCGCATTTGGGCACGTTATACGAC
ACCATGTTGGAGCAAAACTTGTGCCGCATCATTGAACCCTACTCTCGTGT
GCAGGTCGCCCATGTTGCCGAGAGCATTCAGCTGCCCATGCCGCAGGTGG
AAAAGAAGCTGTCCCAAATGATCCTGGACAAAAAGTTCAGCGGCATTCTG
GATCAGGGTGAGGGAGTACTGATTGTTTTCGAAGAGACGCCCGTGGACAA
GACCTATGAACGCGTGCTGGAAACCATACAAAGTATGGGTAAGGTGGTGG
ACACACTGTACCAGAAGGCTAAGAAGCTGTCGTAAAAGCTTTCTAGACCA
T
BS03624.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:25:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn6-RC | 1269 | CG10149-PC | 1..1269 | 17..1285 | 6345 | 100 | Plus |
Rpn6-RB | 1269 | CG10149-PB | 1..1269 | 17..1285 | 6345 | 100 | Plus |
Rpn6-RA | 1320 | CG10149-PA | 52..1320 | 17..1285 | 6345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:25:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn6-RC | 1662 | CG10149-RC | 74..1342 | 17..1285 | 6345 | 100 | Plus |
Rpn6-RB | 1827 | CG10149-RB | 239..1507 | 17..1285 | 6345 | 100 | Plus |
Rpn6-RA | 1612 | CG10149-RA | 126..1394 | 17..1285 | 6345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:25:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14751144..14751653 | 842..333 | 2550 | 100 | Minus |
2R | 25286936 | 2R | 14751714..14752033 | 336..17 | 1600 | 100 | Minus |
2R | 25286936 | 2R | 14750486..14750720 | 1285..1051 | 1175 | 100 | Minus |
2R | 25286936 | 2R | 14750781..14750996 | 1056..841 | 1080 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:25:52 has no hits.
BS03624.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:34 Download gff for
BS03624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn6-RB | 1..1269 | 17..1285 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:18:01 Download gff for
BS03624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn6-RB | 272..1556 | 5..1289 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:37 Download gff for
BS03624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn6-RA | 126..1392 | 17..1283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:34 Download gff for
BS03624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn6-RB | 272..1556 | 5..1289 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:31 Download gff for
BS03624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn6-RA | 126..1392 | 17..1283 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:31 Download gff for
BS03624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14750488..14750716 | 1055..1283 | 100 | <- | Minus |
2R | 14750783..14750995 | 842..1054 | 100 | <- | Minus |
2R | 14751145..14751651 | 335..841 | 100 | <- | Minus |
2R | 14751716..14752033 | 17..334 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:37 Download gff for
BS03624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10637993..10638221 | 1055..1283 | 100 | <- | Minus |
arm_2R | 10638288..10638500 | 842..1054 | 100 | <- | Minus |
arm_2R | 10638650..10639156 | 335..841 | 100 | <- | Minus |
arm_2R | 10639221..10639538 | 17..334 | 100 | | Minus |
BS03624.pep Sequence
Translation from 16 to 1284
> BS03624.pep
MAGATLFERAQALSSVNREEQDSSLLNKLVRDQEGAENDEERIRIKEQGI
LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMD
AGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALG
AQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAI
YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTS
LKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLA
DFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHV
AESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVDKTYERV
LETIQSMGKVVDTLYQKAKKLS*
BS03624.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn6-PC | 422 | CG10149-PC | 1..422 | 1..422 | 2086 | 100 | Plus |
Rpn6-PB | 422 | CG10149-PB | 1..422 | 1..422 | 2086 | 100 | Plus |
Rpn6-PA | 439 | CG10149-PA | 18..439 | 1..422 | 2086 | 100 | Plus |
alien-PD | 444 | CG9556-PD | 41..410 | 15..385 | 233 | 22.3 | Plus |
alien-PE | 444 | CG9556-PE | 41..410 | 15..385 | 233 | 22.3 | Plus |