Clone BS03629 Report

Search the DGRC for BS03629

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:36
Well:29
Vector:pDNR-Dual
Associated Gene/Transcriptpic-RA
Protein status:BS03629.pep: full length peptide match
Sequenced Size:3455

Clone Sequence Records

BS03629.complete Sequence

3455 bp assembled on 2009-12-07

GenBank Submission: KX797135

> BS03629.complete
GAAGTTATCAGTCGACATGTCGCATCACTACGTGGTGACGGCGCAAAAGC
CGACGGCCGTTGTTGCCTGCCTAACAGGCAACTTCACCTCGCCCACGGAT
CTCAATTTGATCATTGCCCGGAACAATCAGGTGGAAATCGATCTGGTCAC
GCCGGAGGGACTGCGCCCCCTAAAAGAGATCAACATAAATGGCACCATTG
CCGTGATGCGCCACTTCCGACCGCCCGACAGCAACAAGGATTTGCTCTTC
ATACTGACGCGTCGTTACAACGTCATGATCCTCGAGGCCCGTATGGTCAA
CGACGTCATCACGGTGGTGACCAAGGCCAATGGTAATGTTTCCGACTCGG
TGGGCATCCCCTCCGAAGGAGGAGTTATTGCGGCCATCGATCCCAAGGCT
AGGGTCATCGGAATGTGCCTTTACCAGGGGCTGTTCACCATCATTCCGAT
GGACAAGGATGCTAGCGAGCTGAAAGCCACAAATCTTAGAATGGATGAGC
TAAACGTGTACGATGTTGAGTTTCTGCACGGCTGCTTGAATCCCACAGTT
ATCGTGATCCACAAGGACAGCGATGGCCGGCACGTAAAGTCGCACGAGAT
TAATCTGCGGGATAAGGAGTTTATGAAAATCGCATGGAAGCAGGACAACG
TGGAAACAGAGGCCACAATGCTGATCCCGGTGCCGTCGCCCATCGGTGGT
GTTATCGTCATTGGTCGGGAATCGATTGTATACCATGACGGAAGCAACTA
TCACGCTGTGGCGCCGCTCACTTTTCGCCAAAGCACCATCAACTGTTACG
CCCGTGTGAGTAGCAATGGATTGCGCTATCTGCTGGGTAACATGGATGGT
CAGCTGTATATGCTGTTCCTTGGGACCGCCGAAACTAGCAAGGGAGTGAC
TGTGAAGGACATAAAAGTGGAGCAACTAGGCGAGATCTCTATACCAGAGT
GCATTACATACCTAGACAATGGTTTCCTTTACATTGGAGCACGTCATGGA
GACTCGCAGTTGGTGCGCTTGAATTCGGAGGCCATCGACGGGTCATATGT
CGTGCCTGTAGAGAATTTCACCAATCTAGCTCCCATTCTGGACATTGCTG
TGGTCGATCTGGATCGCCAGGGACAGGGCCAAATCATCACATGCTCGGGA
AGCTTTAAGGATGGATCTCTACGCATAATTCGCATAGGCATCGGCATTCA
GGAGCATGCCTGCATCGATCTCCCCGGCATTAAGGGCATGTGGTCTCTAA
AGGTGGGAGTCGATGAGAGTCCGTATGAGAACACTTTGGTGCTGGCTTTT
GTGGGACACACAAGGATTCTCACGCTTTCTGGTGAAGAGGTGGAAGAGAC
CGAGATTCCCGGATTTGCCAGCGATCTGCAGACTTTCCTTTGCTCAAATG
TGGATTATGATCAGTTGATTCAAGTTACTTCGGATAGCGTTCGCTTGGTT
AGCAGTGCCACTAAAGCCCTTGTGGCCGAATGGCGTCCTACTGGCGATCG
TACCATCGGTGTTGTGTCCTGCAACACTACCCAGATCTTGGTTGCCTCCG
CATGCGACATATTCTACATAGTTATTGAAGATGGAAGCCTCCGCGAGCAG
TCCCGCCGAACATTGGCATATGAGGTAGCCTGTTTGGACATCACTCCCTT
GGATGAGACTCAAAAAAAGTCGGATTTGGTGGCGGTGGGCCTATGGACCG
ATATATCTGCTGTTATCCTGTCGCTGCCTGATCTTGAGACCATCTACACC
GAAAAACTAAGCGGAGAAATAATTCCCCGCTCCATTCTGATGACCACATT
TGAGGGAATCCATTATCTGCTTTGCGCTTTGGGCGACGGTTCCATGTATT
ACTTTATCATGGACCAAACCACTGGGCAACTGACGGACAAGAAGAAAGTC
ACTCTCGGTACACAACCAACCACGCTCCGCACCTTCCGATCCTTATCTAC
CACTAATGTGTTTGCCTGCTCTGATCGTCCCACGGTGATTTACTCGTCGA
ACCACAAGTTGGTGTTCTCTAACGTAAATCTGAAGGAGGTCAACCACATG
TGCTCCTTAAATGCTCAGGCGTATCCAGATAGTTTGGCGCTGGCGAACAA
GAACGCTGTTATTTTGGGCACTATTGATGAGATTCAGAAGCTGCATATTC
GAACAGTGCCTCTTGGGGAAGGACCACGCAGAATTGCTTACCAAGAGTCG
TCGCAGACTTTTGCTGTGTCCACCCTGCGTATTGATGTCCATGGAAGAGG
CGGAGCTAAACCACTTCGCAATAGTGCCTCTACACAGGCCCAAAACATAA
CGTGTAGCTCGAATTTCCTACCCAAACCGGGTGGTGGTAATTCCACGGCT
GCAAATGCGGAAGTTGGTCAAGAGATCGATGTACACAATCTACTGGTCAT
CGATCAAAACACGTTCGAGGTTCTGCACGCCCACCAATTCGTTGCACCCG
AAACTATATCCTCTCTAATGTCCGCCAAACTGGGCGATGATCCCAACACT
TACTATGTGGTGGCCACATCACTTGTAATTCCAGAAGAACCGGAGCCGAA
GGTTGGAAGGATTATCATCTTCCATTATCACGAGAACAAGCTTACACAAG
TGGCCGAGACCAAGGTGGATGGAACTTGCTATGCCCTGGTTGAGTTCAAT
GGCAAGGTCCTGGCAGGAATCGGTAGTTTTGTCCGTCTATACGAGTGGAC
CAATGAGAAGGAGTTGCGCATGGAGTGCAACATTCAAAATATGATTGCTG
CTTTGTTTCTGAAGGCCAAGGGCGATTTTATATTGGTTGGAGATCTGATG
CGCTCCATCACGCTGCTGCAGCACAAGCAGATGGAGGGAATCTTTGTCGA
GATCGCGCGCGACTGCGAACCCAAGTGGATGCGAGCGGTCGAGATTCTTG
ACGACGATACGTTCCTAGGATCCGAGACAAATGGAAATCTGTTCGTGTGC
CAGAAGGACAGTGCTGCTACCACCGATGAGGAGCGTCAGTTGCTACCGGA
ATTGGCGCGTTTTCATTTGGGCGATACGGTGAACGTTTTCCGTCACGGAT
CTCTGGTGATGCAGAACGTTGGTGAGCGAACTACGCCGATCAATGGATGT
GTTCTGTACGGAACATGCAACGGAGCCATTGGCATTGTAACCCAGATACC
GCAGGACTTCTACGACTTCCTGCACGGCCTGGAGGAGCGGCTGAAGAAAA
TAATCAAGTCGGTGGGCAAGATTGAGCACACGTACTACCGCAATTTCCAA
ATCAACAGCAAAGTTGAACCCAGCGAGGGATTCATCGATGGAGATCTAAT
TGAGAGCTTTTTGGACTTGAGTCGCGACAAGATGCGCGATGCCGTTCAGG
GATTGGAGTTGACACTGAATGGCGAACGAAAGAGTGCGGATGTGGAGGAT
GTCATAAAGATCGTCGAGGACCTCACGCGCATGCATTGAAAGCTTTCTAG
ACCAT

BS03629.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:14:01
Subject Length Description Subject Range Query Range Score Percent Strand
pic-RA 3423 CG7769-PA 1..3423 17..3439 17115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:14:02
Subject Length Description Subject Range Query Range Score Percent Strand
pic-RA 3881 CG7769-RA 164..3587 16..3439 17120 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13054639..13055835 1765..2961 5985 100 Plus
3R 32079331 3R 13053235..13054165 488..1418 4640 99.9 Plus
3R 32079331 3R 13052620..13053034 75..489 2075 100 Plus
3R 32079331 3R 13055889..13056292 2959..3362 2005 99.8 Plus
3R 32079331 3R 13054222..13054577 1411..1766 1780 100 Plus
3R 32079331 3R 13056349..13056431 3357..3439 415 100 Plus
3R 32079331 3R 13052408..13052470 16..78 315 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:14:00 has no hits.

BS03629.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:12 Download gff for BS03629.complete
Subject Subject Range Query Range Percent Splice Strand
DDB1-RA 154..3575 17..3438 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:09:13 Download gff for BS03629.complete
Subject Subject Range Query Range Percent Splice Strand
pic-RA 165..3586 17..3438 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:12:00 Download gff for BS03629.complete
Subject Subject Range Query Range Percent Splice Strand
DDB1-RA 154..3575 17..3438 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:54 Download gff for BS03629.complete
Subject Subject Range Query Range Percent Splice Strand
pic-RA 165..3586 17..3438 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:54 Download gff for BS03629.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13054226..13054577 1415..1766 100 -> Plus
3R 13052409..13052469 17..77 100 -> Plus
3R 13052623..13053034 78..489 100 -> Plus
3R 13053237..13054161 490..1414 100 -> Plus
3R 13054641..13055835 1767..2961 100 -> Plus
3R 13055892..13056288 2962..3358 100 -> Plus
3R 13056351..13056430 3359..3438 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:09:13 Download gff for BS03629.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8879948..8880299 1415..1766 100 -> Plus
arm_3R 8878131..8878191 17..77 100 -> Plus
arm_3R 8878345..8878756 78..489 100 -> Plus
arm_3R 8878959..8879883 490..1414 100 -> Plus
arm_3R 8880363..8881557 1767..2961 100 -> Plus
arm_3R 8881614..8882010 2962..3358 100 -> Plus
arm_3R 8882073..8882152 3359..3438 100   Plus

BS03629.3prime Sequence

894 bp (773 high quality bases) assembled on 2005-12-01

> BS03629.3prime
ATGGTCTAGAAAGCTTTCAATGCATGCGCGTGAGGTCCTCGACGATCTTT
ATGACATCCTCCACATCCGCACTCTTTCGTTCGCCATTCAGTGTCAACTC
CAATCCCTGAACGGCATCGCGCATCTTGTCGCGACTCAAGTCCAAAAAGC
TCTCAATTAGATCTCCATCGATGAATCCCTCGCTGGGTTCAACTTTGCTG
TTGATTTGGAAATTGCGGTAGTACGTGTGCTCAATCTTGCCCACCGACTT
GATTATTTTCTTCAGCCGCTCCTCCAGGCCGTGCAGGAAGTCGTAGAAGT
CCTGCGGTATCTGGGTTACAATGCCAATGGCTCCGTTGCATGTTCCGTAC
AGAACACATCCATTGATCGGCGTAGTTCGCTCACCAACGTTCTGCATCAC
CAGAGATCCGTGACGGAAAACGTTCACCGTATCGCCCAAATGAAAACGCG
CCAATTCCGGTAGCAACTGACGCTCCTCATCGGTGGTAGCAGCACTGTCC
TTCTGGCACACGAACAGATTTCCATTTGTCTCGGATCCTAGGAACGTATC
GTCGTCAAGAATCTCGACCGCTCGCATCCACTTGGGTTCGCAGTCGCGCG
CGATCTCGACAAAGATTCCCTCCATCTGCTTGTGCTGCAGCAGCGTGATG
GAGCGCATCAGATCTCCAACCAATATAAAATCGCCCTTGGCCTTCAGAAA
CAAAGCAGCAATCATATTTTGAATGTTGCACTCCATGCGCAACTCCTTCT
CATTGGTCCACTCGTATAGACGGACAAAACTACCGATTCCTGCCAGGACC
TTGCCATTGAACTCAACCAGGGCATAGCAAGTTCCATCCACCTTGGTCTC
GGCCACTTGTGTAAGCTTGTTCTCGTGATAATGGAAGATGATAA

BS03629.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7769-PA 3423 DDB1-RA 2546..3423 894..17 4390 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
pic-RA 3881 CG7769-RA 2710..3587 894..17 4390 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13055889..13056292 497..94 2005 99.8 Minus
3R 32079331 3R 13055436..13055835 894..495 2000 100 Minus
3R 32079331 3R 13056349..13056431 99..17 415 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:50:48 has no hits.

BS03629.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:40 Download gff for BS03629.3prime
Subject Subject Range Query Range Percent Splice Strand
DDB1-PA 2548..3423 17..892 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:44:00 Download gff for BS03629.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7769-PA 2548..3423 17..892 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:04:47 Download gff for BS03629.3prime
Subject Subject Range Query Range Percent Splice Strand
pic-RA 2710..3595 9..894 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:06:44 Download gff for BS03629.3prime
Subject Subject Range Query Range Percent Splice Strand
pic-RA 2710..3595 9..894 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:06:44 Download gff for BS03629.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13055436..13055835 495..894 100 -> Minus
3R 13055892..13056288 98..494 100 -> Minus
3R 13056351..13056439 9..97 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:04:47 Download gff for BS03629.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8881158..8881557 495..894 100 -> Minus
arm_3R 8881614..8882010 98..494 100 -> Minus
arm_3R 8882073..8882161 9..97 95   Minus

BS03629.5prime Sequence

902 bp (808 high quality bases) assembled on 2005-12-01

> BS03629.5prime
GAAGTTATCAGTCGACATGTCGCATCACTACGTGGTGACGGCGCAAAAGC
CGACGGCCGTTGTTGCCTGCCTAACAGGCAACTTCACCTCGCCCACGGAT
CTCAATTTGATCATTGCCCGGAACAATCAGGTGGAAATCGATCTGGTCAC
GCCGGAGGGACTGCGCCCCCTAAAAGAGATCAACATAAATGGCACCATTG
CCGTGATGCGCCACTTCCGACCGCCCGACAGCAACAAGGATTTGCTCTTC
ATACTGACGCGTCGTTACAACGTCATGATCCTCGAGGCCCGTATGGTCAA
CGACGTCATCACGGTGGTGACCAAGGCCAATGGTAATGTTTCCGACTCGG
TGGGCATCCCCTCCGAAGGAGGAGTTATTGCGGCCATCGATCCCAAGGCT
AGGGTCATCGGAATGTGCCTTTACCAGGGGCTGTTCACCATCATTCCGAT
GGACAAGGATGCTAGCGAGCTGAAAGCCACAAATCTTAGAATGGATGAGC
TAAACGTGTACGATGTTGAGTTTCTGCACGGCTGCTTGAATCCCACAGTT
ATCGTGATCCACAAGGACAGCGATGGCCGGCACGTAAAGTCGCACGAGAT
TAATCTGCGGGATAAGGAGTTTATGAAAATCGCATGGAAGCAGGACAACG
TGGAAACAGAGGCCACAATGCTGATCCCGGTGCCGTCGCCCATCGGTGGT
GTTATCGTCATTGGTCGGGAATCGATTGTATACCATGACGGAAGCAACTA
TCACGCTGTGGCGCCGCTCACTTTTCGCCAAAGCACCATCAACTGTTACG
CCCGTGTGAGTAGCAATGGATTGCGCTATCTGCTGAGTAACATGGATGGT
CAGCTGTATATGCTGTTCCTTGGGGACGCCGAAACTAGCAAGGGAGTGAC
TG

BS03629.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7769-PA 3423 DDB1-RA 1..886 17..902 4355 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
pic-RA 3881 CG7769-RA 164..1050 16..902 4390 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:12:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13052620..13053034 75..489 2075 100 Plus
3R 32079331 3R 13053235..13053649 488..902 2030 99.3 Plus
3R 32079331 3R 13052408..13052470 16..78 315 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:12:34 has no hits.

BS03629.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:41 Download gff for BS03629.5prime
Subject Subject Range Query Range Percent Splice Strand
DDB1-PA 1..886 17..902 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:44:02 Download gff for BS03629.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7769-PA 1..886 17..902 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:17:18 Download gff for BS03629.5prime
Subject Subject Range Query Range Percent Splice Strand
pic-RA 160..1050 9..902 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:04:21 Download gff for BS03629.5prime
Subject Subject Range Query Range Percent Splice Strand
pic-RA 160..1050 9..902 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:04:21 Download gff for BS03629.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13052404..13052469 9..77 95 -> Plus
3R 13052623..13053034 78..489 100 -> Plus
3R 13053237..13053649 490..902 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:17:18 Download gff for BS03629.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8878126..8878191 9..77 95 -> Plus
arm_3R 8878345..8878756 78..489 100 -> Plus
arm_3R 8878959..8879371 490..902 99   Plus

BS03629.pep Sequence

Translation from 16 to 3438

> BS03629.pep
MSHHYVVTAQKPTAVVACLTGNFTSPTDLNLIIARNNQVEIDLVTPEGLR
PLKEININGTIAVMRHFRPPDSNKDLLFILTRRYNVMILEARMVNDVITV
VTKANGNVSDSVGIPSEGGVIAAIDPKARVIGMCLYQGLFTIIPMDKDAS
ELKATNLRMDELNVYDVEFLHGCLNPTVIVIHKDSDGRHVKSHEINLRDK
EFMKIAWKQDNVETEATMLIPVPSPIGGVIVIGRESIVYHDGSNYHAVAP
LTFRQSTINCYARVSSNGLRYLLGNMDGQLYMLFLGTAETSKGVTVKDIK
VEQLGEISIPECITYLDNGFLYIGARHGDSQLVRLNSEAIDGSYVVPVEN
FTNLAPILDIAVVDLDRQGQGQIITCSGSFKDGSLRIIRIGIGIQEHACI
DLPGIKGMWSLKVGVDESPYENTLVLAFVGHTRILTLSGEEVEETEIPGF
ASDLQTFLCSNVDYDQLIQVTSDSVRLVSSATKALVAEWRPTGDRTIGVV
SCNTTQILVASACDIFYIVIEDGSLREQSRRTLAYEVACLDITPLDETQK
KSDLVAVGLWTDISAVILSLPDLETIYTEKLSGEIIPRSILMTTFEGIHY
LLCALGDGSMYYFIMDQTTGQLTDKKKVTLGTQPTTLRTFRSLSTTNVFA
CSDRPTVIYSSNHKLVFSNVNLKEVNHMCSLNAQAYPDSLALANKNAVIL
GTIDEIQKLHIRTVPLGEGPRRIAYQESSQTFAVSTLRIDVHGRGGAKPL
RNSASTQAQNITCSSNFLPKPGGGNSTAANAEVGQEIDVHNLLVIDQNTF
EVLHAHQFVAPETISSLMSAKLGDDPNTYYVVATSLVIPEEPEPKVGRII
IFHYHENKLTQVAETKVDGTCYALVEFNGKVLAGIGSFVRLYEWTNEKEL
RMECNIQNMIAALFLKAKGDFILVGDLMRSITLLQHKQMEGIFVEIARDC
EPKWMRAVEILDDDTFLGSETNGNLFVCQKDSAATTDEERQLLPELARFH
LGDTVNVFRHGSLVMQNVGERTTPINGCVLYGTCNGAIGIVTQIPQDFYD
FLHGLEERLKKIIKSVGKIEHTYYRNFQINSKVEPSEGFIDGDLIESFLD
LSRDKMRDAVQGLELTLNGERKSADVEDVIKIVEDLTRMH*

BS03629.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:46:56
Subject Length Description Subject Range Query Range Score Percent Strand
pic-PA 1140 CG7769-PA 1..1140 1..1140 5858 100 Plus
CG13900-PA 1227 CG13900-PA 4..1212 5..1118 528 20.9 Plus