Clone Sequence Records
BS03631.3prime Sequence
747 bp (746 high quality bases) assembled on 2005-12-01
> BS03631.3prime
ATGGTCTAGAAAGCTTCTAGAACATCTTCTTCCTGACCGCCGTATACCGC
TCCATGTAGACATCGTAGCCATCGAGATCGGTGAACTGTTTCGAGTTGAA
CAGATTGCCGTCGACGGCCAGGTTGCAGATTTTCGAGTCCTTGAGGATCT
TGGGTGTAAAGGCCGCTGCCTGAAGGCAGTTCTCCTCGAGCCGCAGTGTC
TTCAGCTTGGGACAATCGGCTACTTCCTCCGCCAGCGAGGATATTTGGTT
CTGGTTAAGGTTCAGTTCGGTCACAAACAGTCCGCCCACATCGGCGGGCA
CATCGGTGATCTTGTTCCTGGACAGGTCCAGGACATCCAGCTGCTTCAGA
CCGCACAGCATGGAGGGGAACTCCTTCAGCTGATTGTTGCTCAGATTCAC
GGTCTTCAGGTGCGTGCAATTGGCCAGGGTTTTGGGCAGCCTTGTCAGCA
TATTGTCCATCAGCAACAGCACCTCCAGCTTGGCCAGTTCGCCCACCACC
TCGTTGAGTTCCACCAGTCGATTTCCGCTTAGATTGAGGTGCTTGAGTAG
CGTCAGCTTGCCCAGTTCGTCGGGCACACGTTCGAAGCGATTCTCGGAGA
GATCCAGGGTTTTCAGGACATTCGGGTAGGCCCTTAGCTGCAGTGGGAAT
TCTTGCAGCCGCTGCAAGGATATCTTCAGGATTCCCGTCTTCTGGGCCGT
CTCCAGTTGTTGTTTTATCTGTTTATTGCCCATGTCGACTGATAACT
BS03631.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3040-PA | 717 | CG3040-RA | 1..717 | 733..17 | 3585 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:56:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3040-RA | 1070 | CG3040-RA | 219..936 | 733..16 | 3590 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:56:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6972458..6973175 | 16..733 | 3590 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 14:56:50 has no hits.
BS03631.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:42 Download gff for
BS03631.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3040-PA | 1..717 | 17..733 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:44:03 Download gff for
BS03631.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3040-PA | 1..717 | 17..733 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:22:30 Download gff for
BS03631.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3040-RA | 236..955 | 12..733 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:39:20 Download gff for
BS03631.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3040-RA | 219..938 | 12..733 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:39:20 Download gff for
BS03631.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6972456..6973175 | 12..733 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:22:30 Download gff for
BS03631.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6866489..6867208 | 12..733 | 99 | | Plus |
BS03631.5prime Sequence
747 bp (718 high quality bases) assembled on 2005-12-01
> BS03631.5prime
GAAGTTATCAGTCGACATGGGCAATAAACAGATAAAACAACAACTGGAGA
CGGCCCAGAAGACGGGAATCCTGAAGATATCCTTGCAGCGGCTGCAAGAA
TTCCCACTGCAGCTAAGGGCCTACCCGAATGTCCTGAAAACCCTGGATCT
CTCCGAGAATCGCTTCGAACGTGTGCCCGACGAACTGGGCAAGCTGACGC
TACTCAAGCACCTCAATCTAAGCGGAAATCGACTGGTGGAACTCAACGAG
GTGGTGGGCGAACTGGCCAAGCTGGAGGTGCTGTTGCTGATGGACAATAT
GCTGACAAGGCTGCCCAAAACCCTGGCCAATTGCACGCACCTGAAGACCG
TGAATCTGAGCAACAATCAGCTGAAGGAGTTCCCCTCCATGCTGTGCGGT
CTGAAGCAGCTGGATGTCCTGGACCTGTCCAGGAACAAGATCACCGATGT
GCCCGCCGATGTGGGCGGACTGTTTGTGACCGAACTGAACCTTAACCAGA
ACCAAATATCCTCGCTGGCGGAGGAAGTAGCCGATTGTCCCAAGCTGAAG
ACACTGCGGCTCGAGGAGAACTGCCTTCAGGCAGCGGCCTTTACACCCAA
GATCCTCAAGGACTCGAAAATCTGCAACCTGGCCGTCGACGGCAATCTGT
TCAACTCGAAACAGTTCACCGATCTCGATGGCTACGATGTCTACATGGAG
CGGTATACGGCGGTCAGGAAGAAGATGTTCTAGAAGCTTTCTAGACC
BS03631.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:33:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3040-PA | 717 | CG3040-RA | 1..717 | 17..733 | 3585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:46:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3040-RA | 1070 | CG3040-RA | 219..936 | 17..734 | 3590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:46:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6972458..6973175 | 734..17 | 3590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:46:25 has no hits.
BS03631.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:43 Download gff for
BS03631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3040-PA | 1..717 | 17..733 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:44:05 Download gff for
BS03631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3040-PA | 1..717 | 17..733 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:31:30 Download gff for
BS03631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3040-RA | 236..955 | 17..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:56:05 Download gff for
BS03631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3040-RA | 219..938 | 17..738 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:56:05 Download gff for
BS03631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6972456..6973175 | 17..738 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:31:30 Download gff for
BS03631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6866489..6867208 | 17..738 | 99 | | Minus |
BS03631.complete Sequence
749 bp (749 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634729
> BS03631.complete
GAAGTTATCAGTCGACATGGGCAATAAACAGATAAAACAACAACTGGAGA
CGGCCCAGAAGACGGGAATCCTGAAGATATCCTTGCAGCGGCTGCAAGAA
TTCCCACTGCAGCTAAGGGCCTACCCGAATGTCCTGAAAACCCTGGATCT
CTCCGAGAATCGCTTCGAACGTGTGCCCGACGAACTGGGCAAGCTGACGC
TACTCAAGCACCTCAATCTAAGCGGAAATCGACTGGTGGAACTCAACGAG
GTGGTGGGCGAACTGGCCAAGCTGGAGGTGCTGTTGCTGATGGACAATAT
GCTGACAAGGCTGCCCAAAACCCTGGCCAATTGCACGCACCTGAAGACCG
TGAATCTGAGCAACAATCAGCTGAAGGAGTTCCCCTCCATGCTGTGCGGT
CTGAAGCAGCTGGATGTCCTGGACCTGTCCAGGAACAAGATCACCGATGT
GCCCGCCGATGTGGGCGGACTGTTTGTGACCGAACTGAACCTTAACCAGA
ACCAAATATCCTCGCTGGCGGAGGAAGTAGCCGATTGTCCCAAGCTGAAG
ACACTGCGGCTCGAGGAGAACTGCCTTCAGGCAGCGGCCTTTACACCCAA
GATCCTCAAGGACTCGAAAATCTGCAACCTGGCCGTCGACGGCAATCTGT
TCAACTCGAAACAGTTCACCGATCTCGATGGCTACGATGTCTACATGGAG
CGGTATACGGCGGTCAGGAAGAAGATGTTCTAGAAGCTTTCTAGACCAT
BS03631.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:49:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3040-RA | 717 | CG3040-PA | 1..717 | 17..733 | 3585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:49:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3040-RA | 1070 | CG3040-RA | 219..936 | 17..734 | 3590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:49:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6972458..6973175 | 734..17 | 3590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:49:26 has no hits.
BS03631.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:28:58 Download gff for
BS03631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3040-RA | 1..717 | 17..733 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:12:11 Download gff for
BS03631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3040-RA | 236..955 | 17..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:39:03 Download gff for
BS03631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3040-RA | 236..952 | 17..733 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:58 Download gff for
BS03631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3040-RA | 236..955 | 17..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:05 Download gff for
BS03631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3040-RA | 219..935 | 17..733 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:05 Download gff for
BS03631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6972459..6973175 | 17..733 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:39:03 Download gff for
BS03631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6866492..6867208 | 17..733 | 100 | | Minus |
BS03631.pep Sequence
Translation from 16 to 732
> BS03631.pep
MGNKQIKQQLETAQKTGILKISLQRLQEFPLQLRAYPNVLKTLDLSENRF
ERVPDELGKLTLLKHLNLSGNRLVELNEVVGELAKLEVLLLMDNMLTRLP
KTLANCTHLKTVNLSNNQLKEFPSMLCGLKQLDVLDLSRNKITDVPADVG
GLFVTELNLNQNQISSLAEEVADCPKLKTLRLEENCLQAAAFTPKILKDS
KICNLAVDGNLFNSKQFTDLDGYDVYMERYTAVRKKMF*
BS03631.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3040-PA | 238 | CG3040-PA | 1..238 | 1..238 | 1201 | 100 | Plus |
| scrib-PC | 1247 | CG43398-PC | 154..323 | 40..210 | 228 | 34.9 | Plus |
| scrib-PI | 1711 | CG43398-PI | 154..323 | 40..210 | 228 | 34.9 | Plus |
| scrib-PP | 1729 | CG43398-PP | 154..323 | 40..210 | 228 | 34.9 | Plus |
| scrib-PB | 1756 | CG43398-PB | 154..323 | 40..210 | 228 | 34.9 | Plus |
| scrib-PC | 1247 | CG43398-PC | 209..371 | 25..187 | 211 | 32.9 | Plus |
| scrib-PI | 1711 | CG43398-PI | 209..371 | 25..187 | 211 | 32.9 | Plus |
| scrib-PP | 1729 | CG43398-PP | 209..371 | 25..187 | 211 | 32.9 | Plus |
| scrib-PC | 1247 | CG43398-PC | 98..280 | 6..188 | 209 | 31.5 | Plus |
| scrib-PI | 1711 | CG43398-PI | 98..280 | 6..188 | 209 | 31.5 | Plus |
| scrib-PP | 1729 | CG43398-PP | 98..280 | 6..188 | 209 | 31.5 | Plus |
| scrib-PC | 1247 | CG43398-PC | 58..234 | 9..188 | 194 | 32.6 | Plus |
| scrib-PI | 1711 | CG43398-PI | 58..234 | 9..188 | 194 | 32.6 | Plus |
| scrib-PP | 1729 | CG43398-PP | 58..234 | 9..188 | 194 | 32.6 | Plus |
| scrib-PC | 1247 | CG43398-PC | 25..185 | 26..185 | 171 | 29.8 | Plus |
| scrib-PI | 1711 | CG43398-PI | 25..185 | 26..185 | 171 | 29.8 | Plus |
| scrib-PP | 1729 | CG43398-PP | 25..185 | 26..185 | 171 | 29.8 | Plus |
| scrib-PC | 1247 | CG43398-PC | 211..396 | 4..167 | 168 | 29 | Plus |
| scrib-PI | 1711 | CG43398-PI | 211..396 | 4..167 | 168 | 29 | Plus |
| scrib-PP | 1729 | CG43398-PP | 211..396 | 4..167 | 168 | 29 | Plus |
