Clone BS03633 Report

Search the DGRC for BS03633

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:36
Well:33
Vector:pDNR-Dual
Associated Gene/TranscripteEF1delta-RB
Protein status:BS03633.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03633.5prime Sequence

801 bp (800 high quality bases) assembled on 2005-12-01

> BS03633.5prime
GAAGTTATCAGTCGACATGAAAGTAGAGGCATTGGACAAATTCTGGGCTG
ACAAGAGCCGCTACGATCTTGCCGAGAAGCGATTCTACGAGGGTCCCCAG
AAGGTAACTGATCGCAGCCACTACAGCCCATTAGTAAGCGAAATCGCAAA
GGCTAGGGAACACATACAGAACTCGCTGGAAAAGATCGATGGCGTTACTC
TGGACGATGGCTTAAATTCCGAGCTGGCCAAGCGTCTGGCCCAATTGGAG
GGTGAACACAAGGAGTTGAAGACCCAGGTTTCCTTGTTGAACGAACTTTT
GACTGCCACAGTGAAGCGCTTGGAAACTCAGCTGAAATTGACGAATGGAG
TGTCGAAAGAGCCCGAGGTCGAAGCGAAAAAACCAGAAGCGAACGACGAC
GATGACGATGTGGATCTATTTGGATCGGACAGCGAGGAGGAGGATGGAGA
GGCCGCCCGCATAAGGGAGGAAAGGCTGGCAGCCTATGCTGCCAAGAAGG
CCAAGAAAGTTCAAATTATTGCCAAGTCGAACATCATTCTGGATGTTAAG
CCGTGGGACGATGAGACCGATCTGAAGGTTATGGAGACGGAAATCCGCAA
AATCACCCAGGACGGTCTACTGTGGGGAGCTTCCAAATTCGTGCCAGTTG
CCTTTGGCATTCAGAAACTGAGCATTTCATGCGTGGTTGAGGATGATAAG
GTTTCCATCGATTGGCTGACTGAGGAGATCGAGAAACTGGAAGACTTTGT
CCAAAGTGTTGACATCGCTGCGTTCAACAAAATCTAAAAGCTTTCTAGAC
C

BS03633.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4912-PB 771 eEF1delta-RB 1..771 17..787 3855 100 Plus
CG4912-PA 690 eEF1delta-RA 85..690 182..787 3030 100 Plus
CG4912-PA 690 eEF1delta-RA 1..87 17..103 435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:50:06
Subject Length Description Subject Range Query Range Score Percent Strand
eEF1delta-RB 928 CG4912-RB 67..837 17..787 3855 100 Plus
eEF1delta-RA 847 CG4912-RA 151..756 182..787 3030 100 Plus
eEF1delta-RA 847 CG4912-RA 67..153 17..103 435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:50:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10233755..10234359 183..787 3025 100 Plus
2L 23513712 2L 10232573..10232663 17..107 455 100 Plus
2L 23513712 2L 10233478..10233561 101..184 420 100 Plus
Blast to na_te.dros performed on 2015-02-04 03:50:03 has no hits.

BS03633.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:47 Download gff for BS03633.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4912-PB 1..771 17..787 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:44:11 Download gff for BS03633.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4912-PB 1..771 17..787 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:04:30 Download gff for BS03633.5prime
Subject Subject Range Query Range Percent Splice Strand
eEF1delta-RB 67..837 17..787 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:47:05 Download gff for BS03633.5prime
Subject Subject Range Query Range Percent Splice Strand
eEF1delta-RB 67..837 17..787 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:47:05 Download gff for BS03633.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10232573..10232659 17..103 100 -> Plus
2L 10233481..10233561 104..184 100 -> Plus
2L 10233757..10234359 185..787 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:04:30 Download gff for BS03633.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10232573..10232659 17..103 100 -> Plus
arm_2L 10233481..10233561 104..184 100 -> Plus
arm_2L 10233757..10234359 185..787 100   Plus

BS03633.3prime Sequence

801 bp (800 high quality bases) assembled on 2005-12-01

> BS03633.3prime
ATGGTCTAGAAAGCTTTTAGATTTTGTTGAACGCAGCGATGTCAACACTT
TGGACAAAGTCTTCCAGTTTCTCGATCTCCTCAGTCAGCCAATCGATGGA
AACCTTATCATCCTCAACCACGCATGAAATGCTCAGTTTCTGAATGCCAA
AGGCAACTGGCACGAATTTGGAAGCTCCCCACAGTAGACCGTCCTGGGTG
ATTTTGCGGATTTCCGTCTCCATAACCTTCAGATCGGTCTCATCGTCCCA
CGGCTTAACATCCAGAATGATGTTCGACTTGGCAATAATTTGAACTTTCT
TGGCCTTCTTGGCAGCATAGGCTGCCAGCCTTTCCTCCCTTATGCGGGCG
GCCTCTCCATCCTCCTCCTCGCTGTCCGATCCAAATAGATCCACATCGTC
ATCGTCGTCGTTCGCTTCTGGTTTTTTCGCTTCGACCTCGGGCTCTTTCG
ACACTCCATTCGTCAATTTCAGCTGAGTTTCCAAGCGCTTCACTGTGGCA
GTCAAAAGTTCGTTCAACAAGGAAACCTGGGTCTTCAACTCCTTGTGTTC
ACCCTCCAATTGGGCCAGACGCTTGGCCAGCTCGGAATTTAAGCCATCGT
CCAGAGTAACGCCATCGATCTTTTCCAGCGAGTTCTGTATGTGTTCCCTA
GCCTTTGCGATTTCGCTTACTAATGGGCTGTAGTGGCTGCGATCAGTTAC
CTTCTGGGGACCCTCGTAGAATCGCTTCTCGGCAAGATCGTAGCGGCTCT
TGTCAGCCCAGAATTTGTCCAATGCCTCTACTTTCATGTCGACTGATAAC
T

BS03633.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4912-PB 771 eEF1delta-RB 1..771 787..17 3855 100 Minus
CG4912-PA 690 eEF1delta-RA 85..690 622..17 3030 100 Minus
CG4912-PA 690 eEF1delta-RA 1..87 787..701 435 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
eEF1delta-RB 928 CG4912-RB 67..837 787..17 3855 100 Minus
eEF1delta-RA 847 CG4912-RA 151..756 622..17 3030 100 Minus
eEF1delta-RA 847 CG4912-RA 67..153 787..701 435 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:47:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10233755..10234359 621..17 3025 100 Minus
2L 23513712 2L 10232573..10232663 787..697 455 100 Minus
2L 23513712 2L 10233478..10233561 703..620 420 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:47:41 has no hits.

BS03633.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:46 Download gff for BS03633.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4912-PB 1..771 17..787 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:44:09 Download gff for BS03633.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4912-PB 1..771 17..787 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:08:38 Download gff for BS03633.3prime
Subject Subject Range Query Range Percent Splice Strand
eEF1delta-RB 67..837 17..787 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:10:03 Download gff for BS03633.3prime
Subject Subject Range Query Range Percent Splice Strand
eEF1delta-RB 67..837 17..787 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:10:03 Download gff for BS03633.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10232573..10232659 701..787 100 -> Minus
2L 10233481..10233561 620..700 100 -> Minus
2L 10233757..10234359 17..619 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:08:38 Download gff for BS03633.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10232573..10232659 701..787 100 -> Minus
arm_2L 10233481..10233561 620..700 100 -> Minus
arm_2L 10233757..10234359 17..619 100   Minus

BS03633.complete Sequence

803 bp (803 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634730

> BS03633.complete
GAAGTTATCAGTCGACATGAAAGTAGAGGCATTGGACAAATTCTGGGCTG
ACAAGAGCCGCTACGATCTTGCCGAGAAGCGATTCTACGAGGGTCCCCAG
AAGGTAACTGATCGCAGCCACTACAGCCCATTAGTAAGCGAAATCGCAAA
GGCTAGGGAACACATACAGAACTCGCTGGAAAAGATCGATGGCGTTACTC
TGGACGATGGCTTAAATTCCGAGCTGGCCAAGCGTCTGGCCCAATTGGAG
GGTGAACACAAGGAGTTGAAGACCCAGGTTTCCTTGTTGAACGAACTTTT
GACTGCCACAGTGAAGCGCTTGGAAACTCAGCTGAAATTGACGAATGGAG
TGTCGAAAGAGCCCGAGGTCGAAGCGAAAAAACCAGAAGCGAACGACGAC
GATGACGATGTGGATCTATTTGGATCGGACAGCGAGGAGGAGGATGGAGA
GGCCGCCCGCATAAGGGAGGAAAGGCTGGCAGCCTATGCTGCCAAGAAGG
CCAAGAAAGTTCAAATTATTGCCAAGTCGAACATCATTCTGGATGTTAAG
CCGTGGGACGATGAGACCGATCTGAAGGTTATGGAGACGGAAATCCGCAA
AATCACCCAGGACGGTCTACTGTGGGGAGCTTCCAAATTCGTGCCAGTTG
CCTTTGGCATTCAGAAACTGAGCATTTCATGCGTGGTTGAGGATGATAAG
GTTTCCATCGATTGGCTGACTGAGGAGATCGAGAAACTGGAAGACTTTGT
CCAAAGTGTTGACATCGCTGCGTTCAACAAAATCTAAAAGCTTTCTAGAC
CAT

BS03633.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
eEF1delta-RB 771 CG4912-PB 1..771 17..787 3855 100 Plus
eEF1delta-RA 690 CG4912-PA 85..690 182..787 3030 100 Plus
eEF1delta-RA 690 CG4912-PA 1..87 17..103 435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
eEF1delta-RB 928 CG4912-RB 67..837 17..787 3855 100 Plus
eEF1delta-RA 847 CG4912-RA 151..756 182..787 3030 100 Plus
eEF1delta-RA 847 CG4912-RA 67..153 17..103 435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10233755..10234359 183..787 3025 100 Plus
2L 23513712 2L 10232573..10232663 17..107 455 100 Plus
2L 23513712 2L 10233478..10233561 101..184 420 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:54:57 has no hits.

BS03633.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:28:59 Download gff for BS03633.complete
Subject Subject Range Query Range Percent Splice Strand
eEF1delta-RB 1..771 17..787 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:12:13 Download gff for BS03633.complete
Subject Subject Range Query Range Percent Splice Strand
eEF1delta-RB 63..833 17..787 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:09 Download gff for BS03633.complete
Subject Subject Range Query Range Percent Splice Strand
eEF1delta-RB 67..835 17..785 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:59 Download gff for BS03633.complete
Subject Subject Range Query Range Percent Splice Strand
eEF1delta-RB 63..833 17..787 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:24 Download gff for BS03633.complete
Subject Subject Range Query Range Percent Splice Strand
eEF1delta-RB 67..835 17..785 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:24 Download gff for BS03633.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10232573..10232659 17..103 100 -> Plus
2L 10233481..10233561 104..184 100 -> Plus
2L 10233757..10234357 185..785 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:09 Download gff for BS03633.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10232573..10232659 17..103 100 -> Plus
arm_2L 10233481..10233561 104..184 100 -> Plus
arm_2L 10233757..10234357 185..785 100   Plus

BS03633.pep Sequence

Translation from 16 to 786

> BS03633.pep
MKVEALDKFWADKSRYDLAEKRFYEGPQKVTDRSHYSPLVSEIAKAREHI
QNSLEKIDGVTLDDGLNSELAKRLAQLEGEHKELKTQVSLLNELLTATVK
RLETQLKLTNGVSKEPEVEAKKPEANDDDDDVDLFGSDSEEEDGEAARIR
EERLAAYAAKKAKKVQIIAKSNIILDVKPWDDETDLKVMETEIRKITQDG
LLWGASKFVPVAFGIQKLSISCVVEDDKVSIDWLTEEIEKLEDFVQSVDI
AAFNKI*

BS03633.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
eEF1delta-PB 256 CG4912-PB 1..256 1..256 1287 100 Plus
eEF1delta-PA 229 CG4912-PA 1..229 1..256 1114 89.5 Plus
Ef1beta-PC 222 CG6341-PC 82..222 115..256 506 70.4 Plus
Ef1beta-PB 222 CG6341-PB 82..222 115..256 506 70.4 Plus