Clone BS03634 Report

Search the DGRC for BS03634

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:36
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCam-RA
Protein status:BS03634.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03634.3prime Sequence

480 bp (479 high quality bases) assembled on 2005-12-01

> BS03634.3prime
ATGGTCTAGAAAGCTTTCACTTCGATGTCATCATAGTCACGAATTCTTCG
TAATTGACCTGACCGTCGCCATCGATATCAGCCTCCCGGATCATCTCATC
GACCTCCTCGTCTGTGAGTTTCTCGCCCAGATTTGTCATCACGTGACGCA
ACTCGGCCGCCGAGATGAAGCCGTTGCCATCCTTGTCGAACACTCTGAAG
GCTTCTCGGATCTCCTCTTCGCTATCGGTGTCCTTCATTTTGCGTGCCAT
CATGGTAAGGAATTCAGGGAAGTCAATTGTGCCGTTGCCGTCGGCATCAA
CCTCGTTGATCATGTCCTGCAGCTCGGCCTCTGTGGGATTCTGGCCCAGG
GAGCGCATAACTGTGCCCAACTCCTTTGTTGTGATGGTGCCATCGCCGTC
TTTGTCGAATAGCGAGAATGCCTCTTTGAACTCGGCGATCTGTTCCTCTG
TCAGCTGATCGGCCATGTCGACTGATAACT

BS03634.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8472-PA 450 Cam-RA 1..450 466..17 2250 100 Minus
CG8472-PB 450 Cam-RB 1..450 466..17 2250 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:35:15
Subject Length Description Subject Range Query Range Score Percent Strand
Cam-RD 3406 CG8472-RD 130..580 466..16 2255 100 Minus
Cam-RC 5672 CG8472-RC 208..658 466..16 2255 100 Minus
Cam-RE 1435 CG8472-RE 155..605 466..16 2255 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12269192..12269435 289..46 1220 100 Minus
2R 25286936 2R 12264742..12264918 464..288 885 100 Minus
3R 32079331 3R 25812965..25813068 142..39 235 81.7 Minus
X 23542271 X 5619953..5620044 99..190 190 80.4 Plus
Blast to na_te.dros performed on 2015-02-01 09:35:11 has no hits.

BS03634.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:48 Download gff for BS03634.3prime
Subject Subject Range Query Range Percent Splice Strand
Cam-PB 1..450 17..466 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:44:12 Download gff for BS03634.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8472-PB 1..450 17..466 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:37:30 Download gff for BS03634.3prime
Subject Subject Range Query Range Percent Splice Strand
Cam-RB 106..569 10..478 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:02:38 Download gff for BS03634.3prime
Subject Subject Range Query Range Percent Splice Strand
Cam-RE 155..610 10..466 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 10:02:38 Download gff for BS03634.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12264740..12264917 289..467 99 -> Minus
2R 12269193..12269435 46..288 100 -> Minus
2R 12273766..12273800 10..45 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:37:30 Download gff for BS03634.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8152245..8152422 289..467 99 -> Minus
arm_2R 8156698..8156940 46..288 100 -> Minus
arm_2R 8161271..8161305 10..45 94   Minus

BS03634.5prime Sequence

480 bp (479 high quality bases) assembled on 2005-12-01

> BS03634.5prime
GAAGTTATCAGTCGACATGGCCGATCAGCTGACAGAGGAACAGATCGCCG
AGTTCAAAGAGGCATTCTCGCTATTCGACAAAGACGGCGATGGCACCATC
ACAACAAAGGAGTTGGGCACAGTTATGCGCTCCCTGGGCCAGAATCCCAC
AGAGGCCGAGCTGCAGGACATGATCAACGAGGTTGATGCCGACGGCAACG
GCACAATTGACTTCCCTGAATTCCTTACCATGATGGCACGCAAAATGAAG
GACACCGATAGCGAAGAGGAGATCCGAGAAGCCTTCAGAGTGTTCGACAA
GGATGGCAACGGCTTCATCTCGGCGGCCGAGTTGCGTCACGTGATGACAA
ATCTGGGCGAGAAACTCACAGACGAGGAGGTCGATGAGATGATCCGGGAG
GCTGATATCGATGGCGACGGTCAGGTCAATTACGAAGAATTCGTGACTAT
GATGACATCGAAGTGAAAGCTTTCTAGACC

BS03634.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8472-PA 450 Cam-RA 1..450 17..466 2250 100 Plus
CG8472-PB 450 Cam-RB 1..450 17..466 2250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:46:53
Subject Length Description Subject Range Query Range Score Percent Strand
Cam-RD 3406 CG8472-RD 130..580 17..467 2255 100 Plus
Cam-RC 5672 CG8472-RC 208..658 17..467 2255 100 Plus
Cam-RE 1435 CG8472-RE 155..605 17..467 2255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:46:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12269192..12269435 194..437 1220 100 Plus
2R 25286936 2R 12264742..12264918 19..195 885 100 Plus
3R 32079331 3R 25812965..25813068 341..444 235 81.7 Plus
X 23542271 X 5619953..5620044 384..293 190 80.4 Minus
Blast to na_te.dros performed on 2015-02-10 22:46:50 has no hits.

BS03634.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:49 Download gff for BS03634.5prime
Subject Subject Range Query Range Percent Splice Strand
Cam-PB 1..450 17..466 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:44:13 Download gff for BS03634.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8472-PB 1..450 17..466 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:55:14 Download gff for BS03634.5prime
Subject Subject Range Query Range Percent Splice Strand
Cam-RB 106..569 5..473 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:06:30 Download gff for BS03634.5prime
Subject Subject Range Query Range Percent Splice Strand
Cam-RE 155..610 17..473 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:06:30 Download gff for BS03634.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12264740..12264917 16..194 99 -> Plus
2R 12269193..12269435 195..437 100 -> Plus
2R 12273766..12273800 438..473 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:55:14 Download gff for BS03634.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8152245..8152422 16..194 99 -> Plus
arm_2R 8156698..8156940 195..437 100 -> Plus
arm_2R 8161271..8161305 438..473 94   Plus

BS03634.complete Sequence

482 bp (482 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634731

> BS03634.complete
GAAGTTATCAGTCGACATGGCCGATCAGCTGACAGAGGAACAGATCGCCG
AGTTCAAAGAGGCATTCTCGCTATTCGACAAAGACGGCGATGGCACCATC
ACAACAAAGGAGTTGGGCACAGTTATGCGCTCCCTGGGCCAGAATCCCAC
AGAGGCCGAGCTGCAGGACATGATCAACGAGGTTGATGCCGACGGCAACG
GCACAATTGACTTCCCTGAATTCCTTACCATGATGGCACGCAAAATGAAG
GACACCGATAGCGAAGAGGAGATCCGAGAAGCCTTCAGAGTGTTCGACAA
GGATGGCAACGGCTTCATCTCGGCGGCCGAGTTGCGTCACGTGATGACAA
ATCTGGGCGAGAAACTCACAGACGAGGAGGTCGATGAGATGATCCGGGAG
GCTGATATCGATGGCGACGGTCAGGTCAATTACGAAGAATTCGTGACTAT
GATGACATCGAAGTGAAAGCTTTCTAGACCAT

BS03634.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
Cam-RD 450 CG8472-PD 1..450 17..466 2250 100 Plus
Cam-RC 450 CG8472-PC 1..450 17..466 2250 100 Plus
Cam-RE 450 CG8472-PE 1..450 17..466 2250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:53:27
Subject Length Description Subject Range Query Range Score Percent Strand
Cam-RD 3406 CG8472-RD 130..580 17..467 2255 100 Plus
Cam-RC 5672 CG8472-RC 208..658 17..467 2255 100 Plus
Cam-RE 1435 CG8472-RE 155..605 17..467 2255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:53:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12269192..12269435 194..437 1220 100 Plus
2R 25286936 2R 12264742..12264918 19..195 885 100 Plus
3R 32079331 3R 25812965..25813068 341..444 235 81.7 Plus
X 23542271 X 5619953..5620044 384..293 190 80.4 Minus
Blast to na_te.dros performed on 2014-11-27 23:53:25 has no hits.

BS03634.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:45 Download gff for BS03634.complete
Subject Subject Range Query Range Percent Splice Strand
Cam-RB 1..450 17..466 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:55 Download gff for BS03634.complete
Subject Subject Range Query Range Percent Splice Strand
Cam-RA 198..653 17..473 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:40:47 Download gff for BS03634.complete
Subject Subject Range Query Range Percent Splice Strand
Cam-RB 114..562 17..465 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:45 Download gff for BS03634.complete
Subject Subject Range Query Range Percent Splice Strand
Cam-RA 198..653 17..473 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:23 Download gff for BS03634.complete
Subject Subject Range Query Range Percent Splice Strand
Cam-RE 155..603 17..465 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:23 Download gff for BS03634.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12273766..12273793 438..465 100   Plus
2R 12264741..12264917 17..194 99 -> Plus
2R 12269193..12269435 195..437 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:40:47 Download gff for BS03634.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8152246..8152422 17..194 99 -> Plus
arm_2R 8156698..8156940 195..437 100 -> Plus
arm_2R 8161271..8161298 438..465 100   Plus

BS03634.pep Sequence

Translation from 16 to 465

> BS03634.pep
MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQ
DMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGF
ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK*

BS03634.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
Cam-PD 149 CG8472-PD 1..149 1..149 758 100 Plus
Cam-PC 149 CG8472-PC 1..149 1..149 758 100 Plus
Cam-PE 149 CG8472-PE 1..149 1..149 758 100 Plus
Cam-PB 149 CG8472-PB 1..149 1..149 758 100 Plus
Cam-PA 149 CG8472-PA 1..149 1..149 758 100 Plus