Clone Sequence Records
BS03634.3prime Sequence
480 bp (479 high quality bases) assembled on 2005-12-01
> BS03634.3prime
ATGGTCTAGAAAGCTTTCACTTCGATGTCATCATAGTCACGAATTCTTCG
TAATTGACCTGACCGTCGCCATCGATATCAGCCTCCCGGATCATCTCATC
GACCTCCTCGTCTGTGAGTTTCTCGCCCAGATTTGTCATCACGTGACGCA
ACTCGGCCGCCGAGATGAAGCCGTTGCCATCCTTGTCGAACACTCTGAAG
GCTTCTCGGATCTCCTCTTCGCTATCGGTGTCCTTCATTTTGCGTGCCAT
CATGGTAAGGAATTCAGGGAAGTCAATTGTGCCGTTGCCGTCGGCATCAA
CCTCGTTGATCATGTCCTGCAGCTCGGCCTCTGTGGGATTCTGGCCCAGG
GAGCGCATAACTGTGCCCAACTCCTTTGTTGTGATGGTGCCATCGCCGTC
TTTGTCGAATAGCGAGAATGCCTCTTTGAACTCGGCGATCTGTTCCTCTG
TCAGCTGATCGGCCATGTCGACTGATAACT
BS03634.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8472-PA | 450 | Cam-RA | 1..450 | 466..17 | 2250 | 100 | Minus |
CG8472-PB | 450 | Cam-RB | 1..450 | 466..17 | 2250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:35:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cam-RD | 3406 | CG8472-RD | 130..580 | 466..16 | 2255 | 100 | Minus |
Cam-RC | 5672 | CG8472-RC | 208..658 | 466..16 | 2255 | 100 | Minus |
Cam-RE | 1435 | CG8472-RE | 155..605 | 466..16 | 2255 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:35:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12269192..12269435 | 289..46 | 1220 | 100 | Minus |
2R | 25286936 | 2R | 12264742..12264918 | 464..288 | 885 | 100 | Minus |
3R | 32079331 | 3R | 25812965..25813068 | 142..39 | 235 | 81.7 | Minus |
X | 23542271 | X | 5619953..5620044 | 99..190 | 190 | 80.4 | Plus |
Blast to na_te.dros performed on 2015-02-01 09:35:11 has no hits.
BS03634.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:48 Download gff for
BS03634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cam-PB | 1..450 | 17..466 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:44:12 Download gff for
BS03634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8472-PB | 1..450 | 17..466 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:37:30 Download gff for
BS03634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cam-RB | 106..569 | 10..478 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:02:38 Download gff for
BS03634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cam-RE | 155..610 | 10..466 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 10:02:38 Download gff for
BS03634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12264740..12264917 | 289..467 | 99 | -> | Minus |
2R | 12269193..12269435 | 46..288 | 100 | -> | Minus |
2R | 12273766..12273800 | 10..45 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:37:30 Download gff for
BS03634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8152245..8152422 | 289..467 | 99 | -> | Minus |
arm_2R | 8156698..8156940 | 46..288 | 100 | -> | Minus |
arm_2R | 8161271..8161305 | 10..45 | 94 | | Minus |
BS03634.5prime Sequence
480 bp (479 high quality bases) assembled on 2005-12-01
> BS03634.5prime
GAAGTTATCAGTCGACATGGCCGATCAGCTGACAGAGGAACAGATCGCCG
AGTTCAAAGAGGCATTCTCGCTATTCGACAAAGACGGCGATGGCACCATC
ACAACAAAGGAGTTGGGCACAGTTATGCGCTCCCTGGGCCAGAATCCCAC
AGAGGCCGAGCTGCAGGACATGATCAACGAGGTTGATGCCGACGGCAACG
GCACAATTGACTTCCCTGAATTCCTTACCATGATGGCACGCAAAATGAAG
GACACCGATAGCGAAGAGGAGATCCGAGAAGCCTTCAGAGTGTTCGACAA
GGATGGCAACGGCTTCATCTCGGCGGCCGAGTTGCGTCACGTGATGACAA
ATCTGGGCGAGAAACTCACAGACGAGGAGGTCGATGAGATGATCCGGGAG
GCTGATATCGATGGCGACGGTCAGGTCAATTACGAAGAATTCGTGACTAT
GATGACATCGAAGTGAAAGCTTTCTAGACC
BS03634.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8472-PA | 450 | Cam-RA | 1..450 | 17..466 | 2250 | 100 | Plus |
CG8472-PB | 450 | Cam-RB | 1..450 | 17..466 | 2250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:46:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cam-RD | 3406 | CG8472-RD | 130..580 | 17..467 | 2255 | 100 | Plus |
Cam-RC | 5672 | CG8472-RC | 208..658 | 17..467 | 2255 | 100 | Plus |
Cam-RE | 1435 | CG8472-RE | 155..605 | 17..467 | 2255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:46:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12269192..12269435 | 194..437 | 1220 | 100 | Plus |
2R | 25286936 | 2R | 12264742..12264918 | 19..195 | 885 | 100 | Plus |
3R | 32079331 | 3R | 25812965..25813068 | 341..444 | 235 | 81.7 | Plus |
X | 23542271 | X | 5619953..5620044 | 384..293 | 190 | 80.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:46:50 has no hits.
BS03634.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:49 Download gff for
BS03634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cam-PB | 1..450 | 17..466 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:44:13 Download gff for
BS03634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8472-PB | 1..450 | 17..466 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:55:14 Download gff for
BS03634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cam-RB | 106..569 | 5..473 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:06:30 Download gff for
BS03634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cam-RE | 155..610 | 17..473 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:06:30 Download gff for
BS03634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12264740..12264917 | 16..194 | 99 | -> | Plus |
2R | 12269193..12269435 | 195..437 | 100 | -> | Plus |
2R | 12273766..12273800 | 438..473 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:55:14 Download gff for
BS03634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8152245..8152422 | 16..194 | 99 | -> | Plus |
arm_2R | 8156698..8156940 | 195..437 | 100 | -> | Plus |
arm_2R | 8161271..8161305 | 438..473 | 94 | | Plus |
BS03634.complete Sequence
482 bp (482 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634731
> BS03634.complete
GAAGTTATCAGTCGACATGGCCGATCAGCTGACAGAGGAACAGATCGCCG
AGTTCAAAGAGGCATTCTCGCTATTCGACAAAGACGGCGATGGCACCATC
ACAACAAAGGAGTTGGGCACAGTTATGCGCTCCCTGGGCCAGAATCCCAC
AGAGGCCGAGCTGCAGGACATGATCAACGAGGTTGATGCCGACGGCAACG
GCACAATTGACTTCCCTGAATTCCTTACCATGATGGCACGCAAAATGAAG
GACACCGATAGCGAAGAGGAGATCCGAGAAGCCTTCAGAGTGTTCGACAA
GGATGGCAACGGCTTCATCTCGGCGGCCGAGTTGCGTCACGTGATGACAA
ATCTGGGCGAGAAACTCACAGACGAGGAGGTCGATGAGATGATCCGGGAG
GCTGATATCGATGGCGACGGTCAGGTCAATTACGAAGAATTCGTGACTAT
GATGACATCGAAGTGAAAGCTTTCTAGACCAT
BS03634.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:53:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cam-RD | 450 | CG8472-PD | 1..450 | 17..466 | 2250 | 100 | Plus |
Cam-RC | 450 | CG8472-PC | 1..450 | 17..466 | 2250 | 100 | Plus |
Cam-RE | 450 | CG8472-PE | 1..450 | 17..466 | 2250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:53:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cam-RD | 3406 | CG8472-RD | 130..580 | 17..467 | 2255 | 100 | Plus |
Cam-RC | 5672 | CG8472-RC | 208..658 | 17..467 | 2255 | 100 | Plus |
Cam-RE | 1435 | CG8472-RE | 155..605 | 17..467 | 2255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:53:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12269192..12269435 | 194..437 | 1220 | 100 | Plus |
2R | 25286936 | 2R | 12264742..12264918 | 19..195 | 885 | 100 | Plus |
3R | 32079331 | 3R | 25812965..25813068 | 341..444 | 235 | 81.7 | Plus |
X | 23542271 | X | 5619953..5620044 | 384..293 | 190 | 80.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:53:25 has no hits.
BS03634.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:45 Download gff for
BS03634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cam-RB | 1..450 | 17..466 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:55 Download gff for
BS03634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cam-RA | 198..653 | 17..473 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:40:47 Download gff for
BS03634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cam-RB | 114..562 | 17..465 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:45 Download gff for
BS03634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cam-RA | 198..653 | 17..473 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:23 Download gff for
BS03634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cam-RE | 155..603 | 17..465 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:23 Download gff for
BS03634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12273766..12273793 | 438..465 | 100 | | Plus |
2R | 12264741..12264917 | 17..194 | 99 | -> | Plus |
2R | 12269193..12269435 | 195..437 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:40:47 Download gff for
BS03634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8152246..8152422 | 17..194 | 99 | -> | Plus |
arm_2R | 8156698..8156940 | 195..437 | 100 | -> | Plus |
arm_2R | 8161271..8161298 | 438..465 | 100 | | Plus |
BS03634.pep Sequence
Translation from 16 to 465
> BS03634.pep
MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQ
DMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGF
ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK*
BS03634.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cam-PD | 149 | CG8472-PD | 1..149 | 1..149 | 758 | 100 | Plus |
Cam-PC | 149 | CG8472-PC | 1..149 | 1..149 | 758 | 100 | Plus |
Cam-PE | 149 | CG8472-PE | 1..149 | 1..149 | 758 | 100 | Plus |
Cam-PB | 149 | CG8472-PB | 1..149 | 1..149 | 758 | 100 | Plus |
Cam-PA | 149 | CG8472-PA | 1..149 | 1..149 | 758 | 100 | Plus |