Clone Sequence Records
BS03635.3prime Sequence
582 bp (581 high quality bases) assembled on 2005-12-01
> BS03635.3prime
ATGGTCTAGAAAGCTTCTAATAACCATCGATGAGCTTGGCTATGTTTTTG
TCTCTAATAAACTGGCATTTCTGTTCGAATTGCTGTAACGATTCTTCCAT
CCTAAAGAACTCCGAATTAATCATTTTATTGTTTTTACGGATCTGATTCA
GGAATATATCCATGGGCGAAGTGTCTTCCTCTGAGTGTACTTCCTGATTT
TGCTGCACGATAGCTGGGGTTCCACTTGAAATGGTGGATAGATTGGAACG
TCCGATTTTCTCGCCACTTTCTACGAACTCAGCGATGGCGTTGCGGAATT
TCTCGGGTATCAGAAATAGTCGATCAACATTTCCCTTTTTGTAACACAGA
TAGGCGCTCTTCATTTGAAACCATTTTCTGCGTATTTGGGTGGGCGACTT
GTTTGGAAAACCCCTTTTTTTCATCTGATTGGCGATTTGGATGAAGGTGT
ACTGGGTGGTGCTGGTGGACAGGGCTCCCTGGCAGTTGTTCACCTCCTTA
ATCAGGTCGAGCATGCACTCTATTTCGGCGGAGACCCAAAAGTTTCGTTT
CAGTTTCTCGGACTTCATGTCGACTGATAACT
BS03635.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5727-PA | 552 | CG5727-RA | 1..552 | 568..17 | 2760 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:56:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5727-RA | 772 | CG5727-RA | 78..630 | 569..17 | 2765 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:55:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10210225..10210604 | 190..569 | 1900 | 100 | Plus |
| 2L | 23513712 | 2L | 10209995..10210169 | 17..191 | 875 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 14:55:58 has no hits.
BS03635.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:50 Download gff for
BS03635.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5727-PA | 1..552 | 17..568 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:44:15 Download gff for
BS03635.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5727-PA | 1..552 | 17..568 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:22:24 Download gff for
BS03635.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5727-RA | 74..630 | 17..575 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:39:16 Download gff for
BS03635.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5727-RA | 74..630 | 17..575 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:39:16 Download gff for
BS03635.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10209995..10210167 | 17..189 | 100 | <- | Plus |
| 2L | 10210225..10210608 | 190..575 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:22:24 Download gff for
BS03635.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10209995..10210167 | 17..189 | 100 | <- | Plus |
| arm_2L | 10210225..10210608 | 190..575 | 99 | | Plus |
BS03635.5prime Sequence
582 bp (581 high quality bases) assembled on 2005-12-01
> BS03635.5prime
GAAGTTATCAGTCGACATGAAGTCCGAGAAACTGAAACGAAACTTTTGGG
TCTCCGCCGAAATAGAGTGCATGCTCGACCTGATTAAGGAGGTGAACAAC
TGCCAGGGAGCCCTGTCCACCAGCACCACCCAGTACACCTTCATCCAAAT
CGCCAATCAGATGAAAAAAAGGGGTTTTCCAAACAAGTCGCCCACCCAAA
TACGCAGAAAATGGTTTCAAATGAAGAGCGCCTATCTGTGTTACAAAAAG
GGAAATGTTGATCGACTATTTCTGATACCCGAGAAATTCCGCAACGCCAT
CGCTGAGTTCGTAGAAAGTGGCGAGAAAATCGGACGTTCCAATCTATCCA
CCATTTCAAGTGGAACCCCAGCTATCGTGCAGCAAAATCAGGAAGTACAC
TCAGAGGAAGACACTTCGCCCATGGATATATTCCTGAATCAGATCCGTAA
AAACAATAAAATGATTAATTCGGAGTTCTTTAGGATGGAAGAATCGTTAC
AGCAATTCGAACAGAAATGCCAGTTTATTAGAGACAAAAACATAGCCAAG
CTCATCGATGGTTATTAGAAGCTTTCTAGACC
BS03635.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5727-PA | 552 | CG5727-RA | 1..552 | 17..568 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:29:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5727-RA | 772 | CG5727-RA | 78..630 | 16..568 | 2765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:29:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10210225..10210604 | 395..16 | 1900 | 100 | Minus |
| 2L | 23513712 | 2L | 10209995..10210169 | 568..394 | 875 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:29:29 has no hits.
BS03635.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:51 Download gff for
BS03635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5727-PA | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:44:16 Download gff for
BS03635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5727-PA | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:33:06 Download gff for
BS03635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5727-RA | 74..630 | 10..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:32:29 Download gff for
BS03635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5727-RA | 74..630 | 10..568 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:32:29 Download gff for
BS03635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10209995..10210167 | 396..568 | 100 | <- | Minus |
| 2L | 10210225..10210608 | 10..395 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:33:06 Download gff for
BS03635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10209995..10210167 | 396..568 | 100 | <- | Minus |
| arm_2L | 10210225..10210608 | 10..395 | 99 | | Minus |
BS03635.complete Sequence
584 bp (584 high quality bases) assembled on 2005-10-17
> BS03635.complete
GAAGTTATCAGTCGACATGAAGTCCGAGAAACTGAAACGAAACTTTTGGG
TCTCCGCCGAAATAGAGTGCATGCTCGACCTGATTAAGGAGGTGAACAAC
TGCCAGGGAGCCCTGTCCACCAGCACCACCCAGTACACCTTCATCCAAAT
CGCCAATCAGATGAAAAAAAGGGGTTTTCCAAACAAGTCGCCCACCCAAA
TACGCAGAAAATGGTTTCAAATGAAGAGCGCCTATCTGTGTTACAAAAAG
GGAAATGTTGATCGACTATTTCTGATACCCGAGAAATTCCGCAACGCCAT
CGCTGAGTTCGTAGAAAGTGGCGAGAAAATCGGACGTTCCAATCTATCCA
CCATTTCAAGTGGAACCCCAGCTATCGTGCAGCAAAATCAGGAAGTACAC
TCAGAGGAAGACACTTCGCCCATGGATATATTCCTGAATCAGATCCGTAA
AAACAATAAAATGATTAATTCGGAGTTCTTTAGGATGGAAGAATCGTTAC
AGCAATTCGAACAGAAATGCCAGTTTATTAGAGACAAAAACATAGCCAAG
CTCATCGATGGTTATTAGAAGCTTTCTAGACCAT
BS03635.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:45:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5727-RA | 552 | CG5727-PA | 1..552 | 17..568 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:45:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5727-RA | 772 | CG5727-RA | 78..630 | 16..568 | 2765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:45:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10210225..10210604 | 395..16 | 1900 | 100 | Minus |
| 2L | 23513712 | 2L | 10209995..10210169 | 568..394 | 875 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:45:14 has no hits.
BS03635.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:03 Download gff for
BS03635.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5727-RA | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:57:07 Download gff for
BS03635.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5727-RA | 62..618 | 10..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:24:12 Download gff for
BS03635.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5727-RA | 79..630 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:03 Download gff for
BS03635.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5727-RA | 62..618 | 10..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:47 Download gff for
BS03635.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5727-RA | 79..630 | 17..568 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:47 Download gff for
BS03635.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10209995..10210167 | 396..568 | 100 | <- | Minus |
| 2L | 10210225..10210603 | 17..395 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:24:12 Download gff for
BS03635.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10210225..10210603 | 17..395 | 100 | | Minus |
| arm_2L | 10209995..10210167 | 396..568 | 100 | <- | Minus |
BS03635.pep Sequence
Translation from 16 to 567
> BS03635.pep
MKSEKLKRNFWVSAEIECMLDLIKEVNNCQGALSTSTTQYTFIQIANQMK
KRGFPNKSPTQIRRKWFQMKSAYLCYKKGNVDRLFLIPEKFRNAIAEFVE
SGEKIGRSNLSTISSGTPAIVQQNQEVHSEEDTSPMDIFLNQIRKNNKMI
NSEFFRMEESLQQFEQKCQFIRDKNIAKLIDGY*
BS03635.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5727-PA | 183 | CG5727-PA | 1..183 | 1..183 | 947 | 100 | Plus |
