Clone Sequence Records
BS03636.5prime Sequence
390 bp (389 high quality bases) assembled on 2005-11-29
> BS03636.5prime
GAAGTTATCAGTCGACATGGCTCTTGTGAAACCGAAATCGGAGCTGACCC
CGGAGGAGCTGGCGCGGCAGGAGGAGGAGGAGTTTAACACCGGCCCGCTG
TCCGTGCTCACGCAGTCCGTGAAGAACAACACCCAGGTGCTCATCAACTG
CCGCAACAACAAGAAGCTGCTGGGCAGGGTAAAGGCCTTCGATCGGCACT
GCAACATGGTACTGGAAAACGTGAAGGAGATGTGGACGGAGCTGCCGCGG
ACCGGTAAGGGCAAGAAGAAGGTGAAGCCCGTGAACAAGGATCGGTTCAT
ATCGAAGATGTTCCTGCGAGGCGATTCTGTCATCCTGGTCCTAAGGAATC
CCCTGGCCACGGCGGCCGGCAAGTAGAAGCTTTCTAGACC
BS03636.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1249-PA | 360 | CG1249-RA | 1..360 | 17..376 | 1800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:14:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SmD2-RA | 778 | CG1249-RA | 140..499 | 17..376 | 1800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:14:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6345279..6345636 | 376..19 | 1790 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:14:40 has no hits.
BS03636.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:54 Download gff for
BS03636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1249-PA | 1..360 | 17..376 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:44:19 Download gff for
BS03636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1249-PA | 1..360 | 17..376 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:43:41 Download gff for
BS03636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SmD2-RA | 136..502 | 13..381 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:24:04 Download gff for
BS03636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SmD2-RA | 136..502 | 13..381 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:24:04 Download gff for
BS03636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6345276..6345643 | 8..381 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:43:41 Download gff for
BS03636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2170998..2171365 | 8..381 | 97 | | Minus |
BS03636.3prime Sequence
390 bp (389 high quality bases) assembled on 2005-12-01
> BS03636.3prime
ATGGTCTAGAAAGCTTCTACTTGCCGGCCGCCGTGGCCAGGGGATTCCTT
AGGACCAGGATGACAGAATCGCCTCGCAGGAACATCTTCGATATGAACCG
ATCCTTGTTCACGGGCTTCACCTTCTTCTTGCCCTTACCGGTCCGCGGCA
GCTCCGTCCACATCTCCTTCACGTTTTCCAGTACCATGTTGCAGTGCCGA
TCGAAGGCCTTTACCCTGCCCAGCAGCTTCTTGTTGTTGCGGCAGTTGAT
GAGCACCTGGGTGTTGTTCTTCACGGACTGCGTGAGCACGGACAGCGGGC
CGGTGTTAAACTCCTCCTCCTCCTGCCGCGCCAGCTCCTCCGGGGTCAGC
TCCGATTTCGGTTTCACAAGAGCCATGTCGACTGATAACT
BS03636.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1249-PA | 360 | CG1249-RA | 1..360 | 376..17 | 1800 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:50:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SmD2-RA | 778 | CG1249-RA | 140..499 | 376..17 | 1800 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:49:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6345279..6345636 | 17..374 | 1790 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 13:50:01 has no hits.
BS03636.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:53 Download gff for
BS03636.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1249-PA | 1..360 | 17..376 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:44:17 Download gff for
BS03636.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1249-PA | 1..360 | 17..376 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:04:19 Download gff for
BS03636.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SmD2-RA | 136..502 | 12..380 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:52:41 Download gff for
BS03636.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SmD2-RA | 136..502 | 12..380 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:52:41 Download gff for
BS03636.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6345276..6345643 | 12..385 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:04:19 Download gff for
BS03636.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2170998..2171365 | 12..385 | 97 | | Plus |
BS03636.complete Sequence
392 bp (392 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634732
> BS03636.complete
GAAGTTATCAGTCGACATGGCTCTTGTGAAACCGAAATCGGAGCTGACCC
CGGAGGAGCTGGCGCGGCAGGAGGAGGAGGAGTTTAACACCGGCCCGCTG
TCCGTGCTCACGCAGTCCGTGAAGAACAACACCCAGGTGCTCATCAACTG
CCGCAACAACAAGAAGCTGCTGGGCAGGGTAAAGGCCTTCGATCGGCACT
GCAACATGGTACTGGAAAACGTGAAGGAGATGTGGACGGAGCTGCCGCGG
ACCGGTAAGGGCAAGAAGAAGGTGAAGCCCGTGAACAAGGATCGGTTCAT
ATCGAAGATGTTCCTGCGAGGCGATTCTGTCATCCTGGTCCTAAGGAATC
CCCTGGCCACGGCGGCCGGCAAGTAGAAGCTTTCTAGACCAT
BS03636.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:39:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SmD2-RA | 360 | CG1249-PA | 1..360 | 17..376 | 1800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:39:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SmD2-RA | 778 | CG1249-RA | 140..499 | 17..376 | 1800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:39:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6345279..6345636 | 376..19 | 1790 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:39:08 has no hits.
BS03636.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:29 Download gff for
BS03636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
snRNP2-RA | 1..360 | 17..376 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:12 Download gff for
BS03636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
snRNP2-RA | 120..486 | 13..381 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:12:33 Download gff for
BS03636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SmD2-RA | 140..499 | 17..376 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:29 Download gff for
BS03636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
snRNP2-RA | 120..486 | 13..381 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:24:02 Download gff for
BS03636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SmD2-RA | 140..499 | 17..376 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:24:02 Download gff for
BS03636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6345279..6345638 | 17..376 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:12:33 Download gff for
BS03636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2171001..2171360 | 17..376 | 99 | | Minus |
BS03636.pep Sequence
Translation from 16 to 375
> BS03636.pep
MALVKPKSELTPEELARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKK
LLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFL
RGDSVILVLRNPLATAAGK*
BS03636.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SmD2-PA | 119 | CG1249-PA | 1..119 | 1..119 | 608 | 100 | Plus |