Clone BS03636 Report

Search the DGRC for BS03636

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:36
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptSmD2-RA
Protein status:BS03636.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03636.5prime Sequence

390 bp (389 high quality bases) assembled on 2005-11-29

> BS03636.5prime
GAAGTTATCAGTCGACATGGCTCTTGTGAAACCGAAATCGGAGCTGACCC
CGGAGGAGCTGGCGCGGCAGGAGGAGGAGGAGTTTAACACCGGCCCGCTG
TCCGTGCTCACGCAGTCCGTGAAGAACAACACCCAGGTGCTCATCAACTG
CCGCAACAACAAGAAGCTGCTGGGCAGGGTAAAGGCCTTCGATCGGCACT
GCAACATGGTACTGGAAAACGTGAAGGAGATGTGGACGGAGCTGCCGCGG
ACCGGTAAGGGCAAGAAGAAGGTGAAGCCCGTGAACAAGGATCGGTTCAT
ATCGAAGATGTTCCTGCGAGGCGATTCTGTCATCCTGGTCCTAAGGAATC
CCCTGGCCACGGCGGCCGGCAAGTAGAAGCTTTCTAGACC

BS03636.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG1249-PA 360 CG1249-RA 1..360 17..376 1800 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:14:41
Subject Length Description Subject Range Query Range Score Percent Strand
SmD2-RA 778 CG1249-RA 140..499 17..376 1800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:14:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6345279..6345636 376..19 1790 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:14:40 has no hits.

BS03636.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:54 Download gff for BS03636.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1249-PA 1..360 17..376 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:44:19 Download gff for BS03636.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1249-PA 1..360 17..376 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:43:41 Download gff for BS03636.5prime
Subject Subject Range Query Range Percent Splice Strand
SmD2-RA 136..502 13..381 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:24:04 Download gff for BS03636.5prime
Subject Subject Range Query Range Percent Splice Strand
SmD2-RA 136..502 13..381 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:24:04 Download gff for BS03636.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6345276..6345643 8..381 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:43:41 Download gff for BS03636.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2170998..2171365 8..381 97   Minus

BS03636.3prime Sequence

390 bp (389 high quality bases) assembled on 2005-12-01

> BS03636.3prime
ATGGTCTAGAAAGCTTCTACTTGCCGGCCGCCGTGGCCAGGGGATTCCTT
AGGACCAGGATGACAGAATCGCCTCGCAGGAACATCTTCGATATGAACCG
ATCCTTGTTCACGGGCTTCACCTTCTTCTTGCCCTTACCGGTCCGCGGCA
GCTCCGTCCACATCTCCTTCACGTTTTCCAGTACCATGTTGCAGTGCCGA
TCGAAGGCCTTTACCCTGCCCAGCAGCTTCTTGTTGTTGCGGCAGTTGAT
GAGCACCTGGGTGTTGTTCTTCACGGACTGCGTGAGCACGGACAGCGGGC
CGGTGTTAAACTCCTCCTCCTCCTGCCGCGCCAGCTCCTCCGGGGTCAGC
TCCGATTTCGGTTTCACAAGAGCCATGTCGACTGATAACT

BS03636.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG1249-PA 360 CG1249-RA 1..360 376..17 1800 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:50:04
Subject Length Description Subject Range Query Range Score Percent Strand
SmD2-RA 778 CG1249-RA 140..499 376..17 1800 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6345279..6345636 17..374 1790 100 Plus
Blast to na_te.dros performed on 2015-02-03 13:50:01 has no hits.

BS03636.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:53 Download gff for BS03636.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1249-PA 1..360 17..376 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:44:17 Download gff for BS03636.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1249-PA 1..360 17..376 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:04:19 Download gff for BS03636.3prime
Subject Subject Range Query Range Percent Splice Strand
SmD2-RA 136..502 12..380 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:52:41 Download gff for BS03636.3prime
Subject Subject Range Query Range Percent Splice Strand
SmD2-RA 136..502 12..380 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:52:41 Download gff for BS03636.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6345276..6345643 12..385 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:04:19 Download gff for BS03636.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2170998..2171365 12..385 97   Plus

BS03636.complete Sequence

392 bp (392 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634732

> BS03636.complete
GAAGTTATCAGTCGACATGGCTCTTGTGAAACCGAAATCGGAGCTGACCC
CGGAGGAGCTGGCGCGGCAGGAGGAGGAGGAGTTTAACACCGGCCCGCTG
TCCGTGCTCACGCAGTCCGTGAAGAACAACACCCAGGTGCTCATCAACTG
CCGCAACAACAAGAAGCTGCTGGGCAGGGTAAAGGCCTTCGATCGGCACT
GCAACATGGTACTGGAAAACGTGAAGGAGATGTGGACGGAGCTGCCGCGG
ACCGGTAAGGGCAAGAAGAAGGTGAAGCCCGTGAACAAGGATCGGTTCAT
ATCGAAGATGTTCCTGCGAGGCGATTCTGTCATCCTGGTCCTAAGGAATC
CCCTGGCCACGGCGGCCGGCAAGTAGAAGCTTTCTAGACCAT

BS03636.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
SmD2-RA 360 CG1249-PA 1..360 17..376 1800 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
SmD2-RA 778 CG1249-RA 140..499 17..376 1800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6345279..6345636 376..19 1790 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:39:08 has no hits.

BS03636.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:29 Download gff for BS03636.complete
Subject Subject Range Query Range Percent Splice Strand
snRNP2-RA 1..360 17..376 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:12 Download gff for BS03636.complete
Subject Subject Range Query Range Percent Splice Strand
snRNP2-RA 120..486 13..381 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:12:33 Download gff for BS03636.complete
Subject Subject Range Query Range Percent Splice Strand
SmD2-RA 140..499 17..376 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:29 Download gff for BS03636.complete
Subject Subject Range Query Range Percent Splice Strand
snRNP2-RA 120..486 13..381 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:24:02 Download gff for BS03636.complete
Subject Subject Range Query Range Percent Splice Strand
SmD2-RA 140..499 17..376 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:24:02 Download gff for BS03636.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6345279..6345638 17..376 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:12:33 Download gff for BS03636.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2171001..2171360 17..376 99   Minus

BS03636.pep Sequence

Translation from 16 to 375

> BS03636.pep
MALVKPKSELTPEELARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKK
LLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFL
RGDSVILVLRNPLATAAGK*

BS03636.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:16
Subject Length Description Subject Range Query Range Score Percent Strand
SmD2-PA 119 CG1249-PA 1..119 1..119 608 100 Plus