Clone BS03638 Report

Search the DGRC for BS03638

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:36
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptPomp-RA
Protein status:BS03638.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03638.5prime Sequence

435 bp (434 high quality bases) assembled on 2005-11-29

> BS03638.5prime
GAAGTTATCAGTCGACATGTATCAGCCATCACTGAAAGTCCAGCCCGCCG
AGGTGTCCGTGCTGAACGCCACCGGCCGTGTGGGAATGCCCACCGAGGCC
AACTGCCTGAACCAACTGGCCCACGTCCACCGGCTGCGCGACTCGGAGCT
GAACTACAACGAGCACCAGTACAACCGCAACATGCAGATGCTGCGCAACC
ACGAGGGCCTCGGCGTGCCCCTCAAGATGGGCATGGAGCGCTTCGCCGCA
CGTCAGGTGGGCCGCCTGCCCTTCCTTTCGTCCAGCAACTTCATGGACGA
TGTCCTGACTGGCCGCTGTGATTCCATTGGCTTCGAGGACTTCATGAACT
TGCCCGAGAACAGCGAGCATATGCGTCAGCCCCACGCTGTGGTGGAGAAA
TCTCTGGGAATTTACCAATAAAAGCTTTCTAGACC

BS03638.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9324-PA 405 Pomp-RA 1..405 17..421 2025 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:00:23
Subject Length Description Subject Range Query Range Score Percent Strand
Pomp-RA 1092 CG9324-RA 128..532 17..421 2025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20787849..20788115 19..285 1335 100 Plus
2L 23513712 2L 20788400..20788538 283..421 695 100 Plus
Blast to na_te.dros performed on 2015-02-13 09:00:19 has no hits.

BS03638.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:58 Download gff for BS03638.5prime
Subject Subject Range Query Range Percent Splice Strand
Pomp-PA 1..405 17..421 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:44:24 Download gff for BS03638.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9324-PA 1..405 17..421 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:37:37 Download gff for BS03638.5prime
Subject Subject Range Query Range Percent Splice Strand
Pomp-RA 128..532 17..421 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:38:39 Download gff for BS03638.5prime
Subject Subject Range Query Range Percent Splice Strand
Pomp-RA 128..532 17..421 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:38:39 Download gff for BS03638.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20787842..20788115 9..285 98 -> Plus
2L 20788403..20788538 286..421 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:37:37 Download gff for BS03638.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20787842..20788115 9..285 98 -> Plus
arm_2L 20788403..20788538 286..421 100   Plus

BS03638.3prime Sequence

435 bp (434 high quality bases) assembled on 2005-12-01

> BS03638.3prime
ATGGTCTAGAAAGCTTTTATTGGTAAATTCCCAGAGATTTCTCCACCACA
GCGTGGGGCTGACGCATATGCTCGCTGTTCTCGGGCAAGTTCATGAAGTC
CTCGAAGCCAATGGAATCACAGCGGCCAGTCAGGACATCGTCCATGAAGT
TGCTGGACGAAAGGAAGGGCAGGCGGCCCACCTGACGTGCGGCGAAGCGC
TCCATGCCCATCTTGAGGGGCACGCCGAGGCCCTCGTGGTTGCGCAGCAT
CTGCATGTTGCGGTTGTACTGGTGCTCGTTGTAGTTCAGCTCCGAGTCGC
GCAGCCGGTGGACGTGGGCCAGTTGGTTCAGGCAGTTGGCCTCGGTGGGC
ATTCCCACACGGCCGGTGGCGTTCAGCACGGACACCTCGGCGGGCTGGAC
TTTCAGTGATGGCTGATACATGTCGACTGATAACT

BS03638.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG9324-PA 405 Pomp-RA 1..405 421..17 2025 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
Pomp-RA 1092 CG9324-RA 128..532 421..17 2025 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20787849..20788115 419..153 1335 100 Minus
2L 23513712 2L 20788400..20788538 155..17 695 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:52:07 has no hits.

BS03638.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:57 Download gff for BS03638.3prime
Subject Subject Range Query Range Percent Splice Strand
Pomp-PA 1..405 17..421 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:44:24 Download gff for BS03638.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9324-PA 1..405 17..421 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:05:07 Download gff for BS03638.3prime
Subject Subject Range Query Range Percent Splice Strand
Pomp-RA 128..532 17..421 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:09:43 Download gff for BS03638.3prime
Subject Subject Range Query Range Percent Splice Strand
Pomp-RA 128..532 17..421 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:09:43 Download gff for BS03638.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20787842..20788115 153..429 98 -> Minus
2L 20788403..20788538 17..152 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:05:07 Download gff for BS03638.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20787842..20788115 153..429 98 -> Minus
arm_2L 20788403..20788538 17..152 100   Minus

BS03638.complete Sequence

437 bp (437 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634734

> BS03638.complete
GAAGTTATCAGTCGACATGTATCAGCCATCACTGAAAGTCCAGCCCGCCG
AGGTGTCCGTGCTGAACGCCACCGGCCGTGTGGGAATGCCCACCGAGGCC
AACTGCCTGAACCAACTGGCCCACGTCCACCGGCTGCGCGACTCGGAGCT
GAACTACAACGAGCACCAGTACAACCGCAACATGCAGATGCTGCGCAACC
ACGAGGGCCTCGGCGTGCCCCTCAAGATGGGCATGGAGCGCTTCGCCGCA
CGTCAGGTGGGCCGCCTGCCCTTCCTTTCGTCCAGCAACTTCATGGACGA
TGTCCTGACTGGCCGCTGTGATTCCATTGGCTTCGAGGACTTCATGAACT
TGCCCGAGAACAGCGAGCATATGCGTCAGCCCCACGCTGTGGTGGAGAAA
TCTCTGGGAATTTACCAATAAAAGCTTTCTAGACCAT

BS03638.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
Pomp-RA 405 CG9324-PA 1..405 17..421 2025 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
Pomp-RA 1092 CG9324-RA 128..532 17..421 2025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20787849..20788115 19..285 1335 100 Plus
2L 23513712 2L 20788400..20788538 283..421 695 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:36:27 has no hits.

BS03638.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:21 Download gff for BS03638.complete
Subject Subject Range Query Range Percent Splice Strand
Pomp-RA 1..405 17..421 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:26 Download gff for BS03638.complete
Subject Subject Range Query Range Percent Splice Strand
Pomp-RA 135..539 17..421 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:53 Download gff for BS03638.complete
Subject Subject Range Query Range Percent Splice Strand
Pomp-RA 128..530 17..419 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:21 Download gff for BS03638.complete
Subject Subject Range Query Range Percent Splice Strand
Pomp-RA 135..539 17..421 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:46 Download gff for BS03638.complete
Subject Subject Range Query Range Percent Splice Strand
Pomp-RA 128..530 17..419 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:46 Download gff for BS03638.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20787848..20788115 17..285 99 -> Plus
2L 20788403..20788536 286..419 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:53 Download gff for BS03638.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20787848..20788115 17..285 99 -> Plus
arm_2L 20788403..20788536 286..419 100   Plus

BS03638.pep Sequence

Translation from 16 to 420

> BS03638.pep
MYQPSLKVQPAEVSVLNATGRVGMPTEANCLNQLAHVHRLRDSELNYNEH
QYNRNMQMLRNHEGLGVPLKMGMERFAARQVGRLPFLSSSNFMDDVLTGR
CDSIGFEDFMNLPENSEHMRQPHAVVEKSLGIYQ*

BS03638.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
Pomp-PA 134 CG9324-PA 1..134 1..134 706 100 Plus