Clone Sequence Records
BS03638.5prime Sequence
435 bp (434 high quality bases) assembled on 2005-11-29
> BS03638.5prime
GAAGTTATCAGTCGACATGTATCAGCCATCACTGAAAGTCCAGCCCGCCG
AGGTGTCCGTGCTGAACGCCACCGGCCGTGTGGGAATGCCCACCGAGGCC
AACTGCCTGAACCAACTGGCCCACGTCCACCGGCTGCGCGACTCGGAGCT
GAACTACAACGAGCACCAGTACAACCGCAACATGCAGATGCTGCGCAACC
ACGAGGGCCTCGGCGTGCCCCTCAAGATGGGCATGGAGCGCTTCGCCGCA
CGTCAGGTGGGCCGCCTGCCCTTCCTTTCGTCCAGCAACTTCATGGACGA
TGTCCTGACTGGCCGCTGTGATTCCATTGGCTTCGAGGACTTCATGAACT
TGCCCGAGAACAGCGAGCATATGCGTCAGCCCCACGCTGTGGTGGAGAAA
TCTCTGGGAATTTACCAATAAAAGCTTTCTAGACC
BS03638.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9324-PA | 405 | Pomp-RA | 1..405 | 17..421 | 2025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:00:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pomp-RA | 1092 | CG9324-RA | 128..532 | 17..421 | 2025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:00:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20787849..20788115 | 19..285 | 1335 | 100 | Plus |
2L | 23513712 | 2L | 20788400..20788538 | 283..421 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:00:19 has no hits.
BS03638.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:58 Download gff for
BS03638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pomp-PA | 1..405 | 17..421 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:44:24 Download gff for
BS03638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9324-PA | 1..405 | 17..421 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:37:37 Download gff for
BS03638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pomp-RA | 128..532 | 17..421 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:38:39 Download gff for
BS03638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pomp-RA | 128..532 | 17..421 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:38:39 Download gff for
BS03638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20787842..20788115 | 9..285 | 98 | -> | Plus |
2L | 20788403..20788538 | 286..421 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:37:37 Download gff for
BS03638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20787842..20788115 | 9..285 | 98 | -> | Plus |
arm_2L | 20788403..20788538 | 286..421 | 100 | | Plus |
BS03638.3prime Sequence
435 bp (434 high quality bases) assembled on 2005-12-01
> BS03638.3prime
ATGGTCTAGAAAGCTTTTATTGGTAAATTCCCAGAGATTTCTCCACCACA
GCGTGGGGCTGACGCATATGCTCGCTGTTCTCGGGCAAGTTCATGAAGTC
CTCGAAGCCAATGGAATCACAGCGGCCAGTCAGGACATCGTCCATGAAGT
TGCTGGACGAAAGGAAGGGCAGGCGGCCCACCTGACGTGCGGCGAAGCGC
TCCATGCCCATCTTGAGGGGCACGCCGAGGCCCTCGTGGTTGCGCAGCAT
CTGCATGTTGCGGTTGTACTGGTGCTCGTTGTAGTTCAGCTCCGAGTCGC
GCAGCCGGTGGACGTGGGCCAGTTGGTTCAGGCAGTTGGCCTCGGTGGGC
ATTCCCACACGGCCGGTGGCGTTCAGCACGGACACCTCGGCGGGCTGGAC
TTTCAGTGATGGCTGATACATGTCGACTGATAACT
BS03638.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9324-PA | 405 | Pomp-RA | 1..405 | 421..17 | 2025 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:52:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pomp-RA | 1092 | CG9324-RA | 128..532 | 421..17 | 2025 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:52:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20787849..20788115 | 419..153 | 1335 | 100 | Minus |
2L | 23513712 | 2L | 20788400..20788538 | 155..17 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:52:07 has no hits.
BS03638.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:28:57 Download gff for
BS03638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pomp-PA | 1..405 | 17..421 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:44:24 Download gff for
BS03638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9324-PA | 1..405 | 17..421 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:05:07 Download gff for
BS03638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pomp-RA | 128..532 | 17..421 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:09:43 Download gff for
BS03638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pomp-RA | 128..532 | 17..421 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:09:43 Download gff for
BS03638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20787842..20788115 | 153..429 | 98 | -> | Minus |
2L | 20788403..20788538 | 17..152 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:05:07 Download gff for
BS03638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20787842..20788115 | 153..429 | 98 | -> | Minus |
arm_2L | 20788403..20788538 | 17..152 | 100 | | Minus |
BS03638.complete Sequence
437 bp (437 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634734
> BS03638.complete
GAAGTTATCAGTCGACATGTATCAGCCATCACTGAAAGTCCAGCCCGCCG
AGGTGTCCGTGCTGAACGCCACCGGCCGTGTGGGAATGCCCACCGAGGCC
AACTGCCTGAACCAACTGGCCCACGTCCACCGGCTGCGCGACTCGGAGCT
GAACTACAACGAGCACCAGTACAACCGCAACATGCAGATGCTGCGCAACC
ACGAGGGCCTCGGCGTGCCCCTCAAGATGGGCATGGAGCGCTTCGCCGCA
CGTCAGGTGGGCCGCCTGCCCTTCCTTTCGTCCAGCAACTTCATGGACGA
TGTCCTGACTGGCCGCTGTGATTCCATTGGCTTCGAGGACTTCATGAACT
TGCCCGAGAACAGCGAGCATATGCGTCAGCCCCACGCTGTGGTGGAGAAA
TCTCTGGGAATTTACCAATAAAAGCTTTCTAGACCAT
BS03638.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:36:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pomp-RA | 405 | CG9324-PA | 1..405 | 17..421 | 2025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:36:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pomp-RA | 1092 | CG9324-RA | 128..532 | 17..421 | 2025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:36:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20787849..20788115 | 19..285 | 1335 | 100 | Plus |
2L | 23513712 | 2L | 20788400..20788538 | 283..421 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:36:27 has no hits.
BS03638.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:21 Download gff for
BS03638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pomp-RA | 1..405 | 17..421 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:26 Download gff for
BS03638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pomp-RA | 135..539 | 17..421 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:53 Download gff for
BS03638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pomp-RA | 128..530 | 17..419 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:21 Download gff for
BS03638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pomp-RA | 135..539 | 17..421 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:46 Download gff for
BS03638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pomp-RA | 128..530 | 17..419 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:46 Download gff for
BS03638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20787848..20788115 | 17..285 | 99 | -> | Plus |
2L | 20788403..20788536 | 286..419 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:53 Download gff for
BS03638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20787848..20788115 | 17..285 | 99 | -> | Plus |
arm_2L | 20788403..20788536 | 286..419 | 100 | | Plus |
BS03638.pep Sequence
Translation from 16 to 420
> BS03638.pep
MYQPSLKVQPAEVSVLNATGRVGMPTEANCLNQLAHVHRLRDSELNYNEH
QYNRNMQMLRNHEGLGVPLKMGMERFAARQVGRLPFLSSSNFMDDVLTGR
CDSIGFEDFMNLPENSEHMRQPHAVVEKSLGIYQ*
BS03638.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pomp-PA | 134 | CG9324-PA | 1..134 | 1..134 | 706 | 100 | Plus |