Clone Sequence Records
BS03642.3prime Sequence
514 bp (513 high quality bases) assembled on 2005-12-01
> BS03642.3prime
ATGGTCTAGAAAGCTTCTACTTGCTTCTGCTGTTGCTTCCGCTTCAGTTT
GTCGATTAGGGTCTCGATGCTGTTGGCGTCGACCAGACCAATGAACTTGT
CCACTACGACGCCGTTCCTGAAGGCCAGAACAGCGGGCACGGCCTTCACC
TCGAAGGTCTCGACGAGATCCAGGTTCGTCTCCACATCGATGACCGCCAG
GTCGATCTCGTTCGAGTTCTCAAGCAGCTCGAGCATCTTGGGCGTGAGTA
TCTTACAGGGGTCGCACCACTCGGCGTGGAAGTTCACGATCACCGGGTTG
TCGCTGTTGATCACCTTCTGATCGAACTCGTAGTGGTCTTTGATGACCAG
CATTTTGTGGAGGTGCTGCGACTGCGACAGGTACTTCTGGGTGCCCCTGG
CCGCCTGGGGCGCCATTCTTTGGCCTCTGCTCTTCGCTCCAATGGAGCAA
CAGGCCGCCGCCAGACGTGGCGCGATTCCCTCGGCGGCGATCTTCAGCAT
GTCGACTGATAACT
BS03642.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3719-PA | 483 | CG3719-RA | 1..479 | 500..22 | 2395 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:28:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3719-RA | 831 | CG3719-RA | 158..636 | 500..22 | 2395 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:28:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1379080..1379374 | 22..316 | 1475 | 100 | Plus |
| X | 23542271 | X | 1380134..1380323 | 311..500 | 950 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:28:50 has no hits.
BS03642.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:05 Download gff for
BS03642.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3719-PA | 1..483 | 17..500 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:44:36 Download gff for
BS03642.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3719-PA | 1..483 | 17..500 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:22:05 Download gff for
BS03642.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3719-RA | 151..646 | 12..510 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:40:23 Download gff for
BS03642.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3719-RA | 151..646 | 12..510 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:40:23 Download gff for
BS03642.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1379077..1379372 | 17..314 | 99 | <- | Plus |
| X | 1380138..1380330 | 315..510 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:22:05 Download gff for
BS03642.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1273110..1273405 | 17..314 | 99 | <- | Plus |
| arm_X | 1274171..1274363 | 315..510 | 97 | | Plus |
BS03642.5prime Sequence
514 bp (513 high quality bases) assembled on 2005-12-01
> BS03642.5prime
GAAGTTATCAGTCGACATGCTGAAGATCGCCGCCGAGGGAATCGCGCCAC
GTCTGGCGGCGGCCTGTTGCTCCATTGGAGCGAAGAGCAGAGGCCAAAGA
ATGGCGCCCCAGGCGGCCAGGGGCACCCAGAAGTACCTGTCGCAGTCGCA
GCACCTCCACAAAATGCTGGTCATCAAAGACCACTACGAGTTCGATCAGA
AGGTGATCAACAGCGACAACCCGGTGATCGTGAACTTCCACGCCGAGTGG
TGCGACCCCTGTAAGATACTCACGCCCAAGATGCTCGAGCTGCTTGAGAA
CTCGAACGAGATCGACCTGGCGGTCATCGATGTGGAGACGAACCTGGATC
TCGTCGAGACCTTCGAGGTGAAGGCCGTGCCCGCTGTTCTGGCCTTCAGG
AACGGCGTCGTAGTGGACAAGTTCATTGGTCTGGTCGACGCCAACAGCAT
CGAGACCCTAATCGACAAACTGAAGCGGAAGCAACAGCAGAAGCAAGTAG
AAGCTTTCTAGACC
BS03642.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3719-PA | 483 | CG3719-RA | 1..479 | 17..495 | 2395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:37:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3719-RA | 831 | CG3719-RA | 158..636 | 17..495 | 2395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:37:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1379080..1379374 | 495..201 | 1475 | 100 | Minus |
| X | 23542271 | X | 1380134..1380323 | 206..17 | 950 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:37:43 has no hits.
BS03642.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:06 Download gff for
BS03642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3719-PA | 1..483 | 17..500 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:44:37 Download gff for
BS03642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3719-PA | 1..483 | 17..500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:29:54 Download gff for
BS03642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3719-RA | 151..646 | 7..505 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:59:40 Download gff for
BS03642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3719-RA | 151..646 | 7..505 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:59:40 Download gff for
BS03642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1379077..1379372 | 203..500 | 99 | <- | Minus |
| X | 1380138..1380330 | 7..202 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:29:54 Download gff for
BS03642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1273110..1273405 | 203..500 | 99 | <- | Minus |
| arm_X | 1274171..1274363 | 7..202 | 97 | | Minus |
BS03642.complete Sequence
516 bp assembled on 2008-08-15
GenBank Submission: FJ634736
> BS03642.complete
GAAGTTATCAGTCGACATGCTGAAGATCGCCGCCGAGGGAATCGCGCCAC
GTCTGGCGGCGGCCTGTTGCTCCATTGGAGCGAAGAGCAGAGGCCAAAGA
ATGGCGCCCCAGGCGGCCAGGGGCACCCAGAAGTACCTGTCGCAGTCGCA
GCACCTCCACAAAATGCTGGTCATCAAAGACCACTACGAGTTCGATCAGA
AGGTGATCAACAGCGACAACCCGGTGATCGTGAACTTCCACGCCGAGTGG
TGCGACCCCTGTAAGATACTCACGCCCAAGATGCTCGAGCTGCTTGAGAA
CTCGAACGAGATCGACCTGGCGGTCATCGATGTGGAGACGAACCTGGATC
TCGTCGAGACCTTCGAGGTGAAGGCCGTGCCCGCTGTTCTGGCCTTCAGG
AACGGCGTCGTAGTGGACAAGTTCATTGGTCTGGTCGACGCCAACAGCAT
CGAGACCCTAATCGACAAACTGAAGCGGAAGCAACAGCAGAAGCAAGTAG
AAGCTTTCTAGACCAT
BS03642.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:05:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3719-RA | 483 | CG3719-PA | 1..479 | 17..495 | 2395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3719-RA | 831 | CG3719-RA | 158..636 | 17..495 | 2395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1379080..1379374 | 495..201 | 1475 | 100 | Minus |
| X | 23542271 | X | 1380134..1380323 | 206..17 | 950 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:05:32 has no hits.
BS03642.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:54:51 Download gff for
BS03642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3719-RA | 147..642 | 7..505 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:52:07 Download gff for
BS03642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3719-RA | 158..640 | 17..500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:17 Download gff for
BS03642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3719-RA | 154..636 | 17..500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:11:02 Download gff for
BS03642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3719-RA | 158..640 | 17..500 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:11:02 Download gff for
BS03642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1379076..1379372 | 203..500 | 99 | <- | Minus |
| X | 1380138..1380323 | 17..202 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:52:07 Download gff for
BS03642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1273109..1273405 | 203..500 | 99 | <- | Minus |
| arm_X | 1274171..1274356 | 17..202 | 100 | | Minus |
BS03642.pep Sequence
Translation from 16 to 510
> BS03642.pep
MLKIAAEGIAPRLAAACCSIGAKSRGQRMAPQAARGTQKYLSQSQHLHKM
LVIKDHYEFDQKVINSDNPVIVNFHAEWCDPCKILTPKMLELLENSNEID
LAVIDVETNLDLVETFEVKAVPAVLAFRNGVVVDKFIGLVDANSIETLID
KLKRKQQQKQVEAF*
BS03642.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:49:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3719-PA | 160 | CG3719-PA | 1..160 | 1..160 | 814 | 100 | Plus |
| CG8993-PA | 142 | CG8993-PA | 17..134 | 34..149 | 208 | 36.4 | Plus |
| CG8517-PA | 145 | CG8517-PA | 34..133 | 53..151 | 195 | 35 | Plus |
| TrxT-PB | 157 | CG3315-PB | 5..104 | 53..151 | 150 | 28.7 | Plus |
| TrxT-PA | 157 | CG3315-PA | 5..104 | 53..151 | 150 | 28.7 | Plus |
