Clone Sequence Records
BS03644.5prime Sequence
603 bp (602 high quality bases) assembled on 2005-11-29
> BS03644.5prime
GAAGTTATCAGTCGACATGGGATCCGGCAAACAACAGAAAGTCCAGTCCT
CTGGCTTCACCAAGGAAGAGGAGCTGCTGCTGCAGGACTTTAGCCGCAAC
GTGAGCACCAAGTCGTCGGCGCTGTTCTACGGCAATGCCTTTATCGTGTC
GGCCGTTCCAATCTGGCTCTTCTGGCGCATCCACAACATGGACTTGTGGC
CCAGCTCCATCCTGTTCGTCCTGGTGACGGCCGCTAGTACTTATCTGATG
GCCACCGCCTACAAGAACATCAAGTTCCAGCTGAAGCACAAGATCGCCGG
ACGGCGGGAGGAGGCGGTGACCCGCGAGGTCAACCGTCAGGTGGGCGATG
ACAAGAAGGTCACGCGCAAGGAAAAGGACGAGCGCATCCTGTGGAAGAAG
AACGAGGTAGCCGACTACGAGGCCACCACCTTCTCCATCTTCTACAACAA
CGCCATCTACCTGGCCGTTATCATTTTCATCAGCTTCTTTATCCTGAAGA
ACTCGACGCCGTTCATCAACTACATCTTTTCCGTGGGCATCGCCAGCGGC
GCTCTGTCGCTCTTCTCCACCAGCGCACAGACGAACTGAAAGCTTTCTAG
ACC
BS03644.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5885-PA | 573 | CG5885-RA | 1..573 | 17..589 | 2865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:39:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5885-RA | 890 | CG5885-RA | 96..668 | 17..589 | 2865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:39:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9917443..9917867 | 589..165 | 2125 | 100 | Minus |
| 2L | 23513712 | 2L | 9917933..9918081 | 165..17 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:39:39 has no hits.
BS03644.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:09 Download gff for
BS03644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5885-PA | 1..573 | 17..589 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:44:42 Download gff for
BS03644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5885-PA | 1..573 | 17..589 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:31:06 Download gff for
BS03644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5885-RA | 96..670 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:24:34 Download gff for
BS03644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5885-RA | 96..670 | 17..593 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:24:34 Download gff for
BS03644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9917441..9917867 | 165..593 | 99 | <- | Minus |
| 2L | 9917934..9918081 | 17..164 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:31:06 Download gff for
BS03644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9917441..9917867 | 165..593 | 99 | <- | Minus |
| arm_2L | 9917934..9918081 | 17..164 | 100 | | Minus |
BS03644.3prime Sequence
603 bp (602 high quality bases) assembled on 2005-12-01
> BS03644.3prime
ATGGTCTAGAAAGCTTTCAGTTCGTCTGTGCGCTGGTGGAGAAGAGCGAC
AGAGCGCCGCTGGCGATGCCCACGGAAAAGATGTAGTTGATGAACGGCGT
CGAGTTCTTCAGGATAAAGAAGCTGATGAAAATGATAACGGCCAGGTAGA
TGGCGTTGTTGTAGAAGATGGAGAAGGTGGTGGCCTCGTAGTCGGCTACC
TCGTTCTTCTTCCACAGGATGCGCTCGTCCTTTTCCTTGCGCGTGACCTT
CTTGTCATCGCCCACCTGACGGTTGACCTCGCGGGTCACCGCCTCCTCCC
GCCGTCCGGCGATCTTGTGCTTCAGCTGGAACTTGATGTTCTTGTAGGCG
GTGGCCATCAGATAAGTACTAGCGGCCGTCACCAGGACGAACAGGATGGA
GCTGGGCCACAAGTCCATGTTGTGGATGCGCCAGAAGAGCCAGATTGGAA
CGGCCGACACGATAAAGGCATTGCCGTAGAACAGCGCCGACGACTTGGTG
CTCACGTTGCGGCTAAAGTCCTGCAGCAGCAGCTCCTCTTCCTTGGTGAA
GCCAGAGGACTGGACTTTCTGTTGTTTGCCGGATCCCATGTCGACTGATA
ACT
BS03644.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5885-PA | 573 | CG5885-RA | 1..573 | 589..17 | 2865 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:29:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5885-RA | 890 | CG5885-RA | 96..668 | 589..17 | 2865 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:29:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9917443..9917867 | 17..441 | 2125 | 100 | Plus |
| 2L | 23513712 | 2L | 9917933..9918081 | 441..589 | 745 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:29:34 has no hits.
BS03644.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:08 Download gff for
BS03644.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5885-PA | 1..573 | 17..589 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:44:40 Download gff for
BS03644.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5885-PA | 1..573 | 17..589 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:22:49 Download gff for
BS03644.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5885-RA | 96..670 | 13..589 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:40:48 Download gff for
BS03644.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5885-RA | 96..670 | 13..589 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:40:48 Download gff for
BS03644.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9917441..9917867 | 13..441 | 99 | <- | Plus |
| 2L | 9917934..9918081 | 442..589 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:22:49 Download gff for
BS03644.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9917441..9917867 | 13..441 | 99 | <- | Plus |
| arm_2L | 9917934..9918081 | 442..589 | 100 | | Plus |
BS03644.complete Sequence
605 bp (605 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634737
> BS03644.complete
GAAGTTATCAGTCGACATGGGATCCGGCAAACAACAGAAAGTCCAGTCCT
CTGGCTTCACCAAGGAAGAGGAGCTGCTGCTGCAGGACTTTAGCCGCAAC
GTGAGCACCAAGTCGTCGGCGCTGTTCTACGGCAATGCCTTTATCGTGTC
GGCCGTTCCAATCTGGCTCTTCTGGCGCATCCACAACATGGACTTGTGGC
CCAGCTCCATCCTGTTCGTCCTGGTGACGGCCGCTAGTACTTATCTGATG
GCCACCGCCTACAAGAACATCAAGTTCCAGCTGAAGCACAAGATCGCCGG
ACGGCGGGAGGAGGCGGTGACCCGCGAGGTCAACCGTCAGGTGGGCGATG
ACAAGAAGGTCACGCGCAAGGAAAAGGACGAGCGCATCCTGTGGAAGAAG
AACGAGGTAGCCGACTACGAGGCCACCACCTTCTCCATCTTCTACAACAA
CGCCATCTACCTGGCCGTTATCATTTTCATCAGCTTCTTTATCCTGAAGA
ACTCGACGCCGTTCATCAACTACATCTTTTCCGTGGGCATCGCCAGCGGC
GCTCTGTCGCTCTTCTCCACCAGCGCACAGACGAACTGAAAGCTTTCTAG
ACCAT
BS03644.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:02:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5885-RA | 573 | CG5885-PA | 1..573 | 17..589 | 2865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5885-RA | 890 | CG5885-RA | 96..668 | 17..589 | 2865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9917443..9917867 | 589..165 | 2125 | 100 | Minus |
| 2L | 23513712 | 2L | 9917933..9918081 | 165..17 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:02:36 has no hits.
BS03644.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:39 Download gff for
BS03644.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5885-RA | 1..573 | 17..589 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:23 Download gff for
BS03644.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5885-RA | 85..659 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:07:35 Download gff for
BS03644.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5885-RA | 96..667 | 17..588 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:39 Download gff for
BS03644.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5885-RA | 85..659 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:09:51 Download gff for
BS03644.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5885-RA | 96..667 | 17..588 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:09:51 Download gff for
BS03644.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9917444..9917867 | 165..588 | 100 | <- | Minus |
| 2L | 9917934..9918081 | 17..164 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:07:35 Download gff for
BS03644.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9917444..9917867 | 165..588 | 100 | <- | Minus |
| arm_2L | 9917934..9918081 | 17..164 | 100 | | Minus |
BS03644.pep Sequence
Translation from 16 to 588
> BS03644.pep
MGSGKQQKVQSSGFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAVPIW
LFWRIHNMDLWPSSILFVLVTAASTYLMATAYKNIKFQLKHKIAGRREEA
VTREVNRQVGDDKKVTRKEKDERILWKKNEVADYEATTFSIFYNNAIYLA
VIIFISFFILKNSTPFINYIFSVGIASGALSLFSTSAQTN*
BS03644.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:02:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5885-PA | 190 | CG5885-PA | 1..190 | 1..190 | 961 | 100 | Plus |
