Clone Sequence Records
BS03649.3prime Sequence
396 bp (395 high quality bases) assembled on 2005-12-01
> BS03649.3prime
ATGGTCTAGAAAGCTTTTAGTTAATTTTGGCCATGCCGTAAACATTCTCA
TCGGAGTAGGCAATGTACAGGAAATAGTCCTCCTCGTGATGTTCCTGGTA
CAGGGAGCCCATGGTAGCCGATGTTGGTGGAATGACGTTGTTCACAAAGA
AGAAGAGGGCATCCTCGGGACGCAGGTGGATGCGCTTGCGAATGAGGAAG
TAGAACTGACCGACGGTCAGGTCGGAAGGCACCAGGTACTTCTTCTTGTC
CAAATCACCGATGCGCGCCTTGGGAGCCTTCTCGACGATGACGGGCACAC
GGTCTGGATATTTGCGACGGATCTTGTCGCCCTCGGCGCGACGCTTCTCG
AAGGCGTGCTCCTCCTTGTATTGGAACTTCATGTCGACTGATAACT
BS03649.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32672-PA | 366 | Atg8a-RA | 1..366 | 382..17 | 1830 | 100 | Minus |
| CG12334-PA | 363 | Atg8b-RA | 58..104 | 331..285 | 160 | 93.6 | Minus |
| CG12334-PA | 363 | Atg8b-RA | 181..281 | 208..108 | 155 | 86.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:57:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg8a-RA | 1214 | CG32672-RA | 268..634 | 383..17 | 1835 | 100 | Minus |
| Atg8a-RC | 1183 | CG32672-RC | 328..603 | 292..17 | 1380 | 100 | Minus |
| Atg8a-RB | 1010 | CG32672-RB | 155..430 | 292..17 | 1380 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:57:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10765604..10765802 | 94..292 | 995 | 100 | Plus |
| 3R | 32079331 | 3R | 17724567..17724904 | 45..382 | 775 | 82 | Plus |
| X | 23542271 | X | 10767979..10768071 | 291..383 | 465 | 100 | Plus |
| X | 23542271 | X | 10765458..10765537 | 17..96 | 400 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 23:57:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 412 | 7567 | 412 412 7567bp | 5841..5904 | 384..322 | 110 | 69.7 | Minus |
BS03649.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:15 Download gff for
BS03649.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8a-PA | 1..366 | 17..382 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:44:51 Download gff for
BS03649.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32672-PA | 1..366 | 17..382 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:00:50 Download gff for
BS03649.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8a-RA | 255..635 | 10..391 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:41 Download gff for
BS03649.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8a-RA | 258..638 | 10..391 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:41 Download gff for
BS03649.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10765454..10765535 | 10..94 | 96 | <- | Plus |
| X | 10765605..10765802 | 95..292 | 100 | <- | Plus |
| X | 10767981..10768081 | 293..391 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:00:50 Download gff for
BS03649.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10659487..10659568 | 10..94 | 96 | <- | Plus |
| arm_X | 10659638..10659835 | 95..292 | 100 | <- | Plus |
| arm_X | 10662014..10662114 | 293..391 | 96 | | Plus |
BS03649.5prime Sequence
396 bp (395 high quality bases) assembled on 2005-11-29
> BS03649.5prime
GAAGTTATCAGTCGACATGAAGTTCCAATACAAGGAGGAGCACGCCTTCG
AGAAGCGTCGCGCCGAGGGCGACAAGATCCGTCGCAAATATCCAGACCGT
GTGCCCGTCATCGTCGAGAAGGCTCCCAAGGCGCGCATCGGTGATTTGGA
CAAGAAGAAGTACCTGGTGCCTTCCGACCTGACCGTCGGTCAGTTCTACT
TCCTCATTCGCAAGCGCATCCACCTGCGTCCCGAGGATGCCCTCTTCTTC
TTTGTGAACAACGTCATTCCACCAACATCGGCTACCATGGGCTCCCTGTA
CCAGGAACATCACGAGGAGGACTATTTCCTGTACATTGCCTACTCCGATG
AGAATGTTTACGGCATGGCCAAAATTAACTAAAAGCTTTCTAGACC
BS03649.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32672-PA | 366 | Atg8a-RA | 1..366 | 17..382 | 1830 | 100 | Plus |
| CG12334-PA | 363 | Atg8b-RA | 58..104 | 68..114 | 160 | 93.6 | Plus |
| CG12334-PA | 363 | Atg8b-RA | 181..281 | 191..291 | 155 | 86.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:48:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg8a-RA | 1214 | CG32672-RA | 268..634 | 16..382 | 1835 | 100 | Plus |
| Atg8a-RC | 1183 | CG32672-RC | 328..603 | 107..382 | 1380 | 100 | Plus |
| Atg8a-RB | 1010 | CG32672-RB | 155..430 | 107..382 | 1380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:48:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10765604..10765802 | 305..107 | 995 | 100 | Minus |
| 3R | 32079331 | 3R | 17724567..17724904 | 354..17 | 775 | 82 | Minus |
| X | 23542271 | X | 10767979..10768071 | 108..16 | 465 | 100 | Minus |
| X | 23542271 | X | 10765458..10765537 | 382..303 | 400 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 11:48:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 412 | 7567 | 412 412 7567bp | 5841..5904 | 15..77 | 110 | 69.7 | Plus |
BS03649.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:16 Download gff for
BS03649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8a-PA | 1..366 | 17..382 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:44:52 Download gff for
BS03649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32672-PA | 1..366 | 17..382 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:20:35 Download gff for
BS03649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8a-RA | 255..635 | 8..389 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:09:48 Download gff for
BS03649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8a-RA | 258..638 | 8..389 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:09:48 Download gff for
BS03649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10765454..10765535 | 305..389 | 96 | <- | Minus |
| X | 10765605..10765802 | 107..304 | 100 | <- | Minus |
| X | 10767981..10768081 | 8..106 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:20:35 Download gff for
BS03649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10659487..10659568 | 305..389 | 96 | <- | Minus |
| arm_X | 10659638..10659835 | 107..304 | 100 | <- | Minus |
| arm_X | 10662014..10662114 | 8..106 | 96 | | Minus |
BS03649.complete Sequence
398 bp (398 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ638771
> BS03649.complete
GAAGTTATCAGTCGACATGAAGTTCCAATACAAGGAGGAGCACGCCTTCG
AGAAGCGTCGCGCCGAGGGCGACAAGATCCGTCGCAAATATCCAGACCGT
GTGCCCGTCATCGTCGAGAAGGCTCCCAAGGCGCGCATCGGTGATTTGGA
CAAGAAGAAGTACCTGGTGCCTTCCGACCTGACCGTCGGTCAGTTCTACT
TCCTCATTCGCAAGCGCATCCACCTGCGTCCCGAGGATGCCCTCTTCTTC
TTTGTGAACAACGTCATTCCACCAACATCGGCTACCATGGGCTCCCTGTA
CCAGGAACATCACGAGGAGGACTATTTCCTGTACATTGCCTACTCCGATG
AGAATGTTTACGGCATGGCCAAAATTAACTAAAAGCTTTCTAGACCAT
BS03649.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:18:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg8a-RA | 366 | CG32672-PA | 1..366 | 17..382 | 1830 | 100 | Plus |
| Atg8a-RC | 324 | CG32672-PC | 49..324 | 107..382 | 1380 | 100 | Plus |
| Atg8a-RB | 291 | CG32672-PB | 16..291 | 107..382 | 1380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:18:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg8a-RA | 1214 | CG32672-RA | 268..634 | 16..382 | 1835 | 100 | Plus |
| Atg8a-RC | 1183 | CG32672-RC | 328..603 | 107..382 | 1380 | 100 | Plus |
| Atg8a-RB | 1010 | CG32672-RB | 155..430 | 107..382 | 1380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:18:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10765604..10765802 | 305..107 | 995 | 100 | Minus |
| 3R | 32079331 | 3R | 17724567..17724904 | 354..17 | 775 | 82 | Minus |
| X | 23542271 | X | 10767979..10768071 | 108..16 | 465 | 100 | Minus |
| X | 23542271 | X | 10765458..10765537 | 382..303 | 400 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 16:18:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 412 | 7567 | 412 412 7567bp | 5841..5904 | 15..77 | 110 | 69.7 | Plus |
BS03649.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:40 Download gff for
BS03649.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8a-RA | 1..366 | 17..382 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:53:21 Download gff for
BS03649.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8a-RA | 255..635 | 8..389 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:52 Download gff for
BS03649.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8a-RA | 266..629 | 17..380 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:40 Download gff for
BS03649.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8a-RA | 255..635 | 8..389 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:35 Download gff for
BS03649.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8a-RA | 269..632 | 17..380 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:35 Download gff for
BS03649.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10765460..10765535 | 305..380 | 100 | <- | Minus |
| X | 10765605..10765802 | 107..304 | 100 | <- | Minus |
| X | 10767981..10768070 | 17..106 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:52 Download gff for
BS03649.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10659493..10659568 | 305..380 | 100 | <- | Minus |
| arm_X | 10659638..10659835 | 107..304 | 100 | <- | Minus |
| arm_X | 10662014..10662103 | 17..106 | 100 | | Minus |
BS03649.pep Sequence
Translation from 16 to 381
> BS03649.pep
MKFQYKEEHAFEKRRAEGDKIRRKYPDRVPVIVEKAPKARIGDLDKKKYL
VPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHE
EDYFLYIAYSDENVYGMAKIN*
BS03649.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg8a-PA | 121 | CG32672-PA | 1..121 | 1..121 | 638 | 100 | Plus |
| Atg8b-PB | 120 | CG12334-PB | 3..118 | 1..116 | 530 | 82.8 | Plus |
| Atg8b-PA | 120 | CG12334-PA | 3..118 | 1..116 | 530 | 82.8 | Plus |
| Atg8a-PC | 107 | CG32672-PC | 7..107 | 21..121 | 482 | 92.1 | Plus |
| Atg8a-PB | 96 | CG32672-PB | 6..96 | 31..121 | 476 | 100 | Plus |
