Clone Sequence Records
BS03652.5prime Sequence
552 bp (551 high quality bases) assembled on 2005-12-01
> BS03652.5prime
GAAGTTATCAGTCGACATGAAGACGTGGTACATGGTGGTAGTGATCGGCT
TCCTGGCGACGTTGGCCCAAACGTCGCTGGCCCTGAAAGAGGAGGACTGC
GAAGTTTGCGTCAAGACGGTTAGGCGGTTCGCAGATTCGCTGGACGACTC
CACCAAGAAGGACTACAAACAGATCGAAACGGCCTTCAAAAAGTTCTGCA
AAGCGCAGAAAAACAAGGAACACAGATTCTGTTACTACCTCGGCGGTCTG
GAAGAATCCGCCACGGGCATCCTCAACGAGCTGAGCAAACCCCTCAGTTG
GTCCATGCCAGCTGAGAAGATCTGCGAGAAGCTGAAGAAGAAGGACGCAC
AAATCTGCGACCTTCGCTATGAGAAACAAATCGATCTGAACAGCGTGGAC
CTGAAGAAGCTGAAGGTACGCGACCTGAAGAAAATCCTCAACGACTGGGA
CGAGAGCTGTGACGGTTGCCTGGAGAAGGGCGACTTCATCAAGCGTATCG
AGGAGCTGAAGCCCAAGTACTCGCGCAGCGAGCTGTAGAAGCTTTCTAGA
CC
BS03652.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7013-PA | 522 | ARP-like-RA | 1..522 | 17..538 | 2610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:18:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Manf-RA | 847 | CG7013-RA | 108..630 | 17..539 | 2615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:18:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16350416..16350584 | 371..539 | 845 | 100 | Plus |
3R | 32079331 | 3R | 16349886..16350027 | 230..371 | 710 | 100 | Plus |
3R | 32079331 | 3R | 16349673..16349799 | 103..229 | 635 | 100 | Plus |
3R | 32079331 | 3R | 16349511..16349598 | 17..104 | 440 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 02:18:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 1355..1418 | 156..224 | 108 | 66.7 | Plus |
TART-A | 13424 | TART-A 13424bp | 12533..12596 | 156..224 | 108 | 66.7 | Plus |
BS03652.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:22 Download gff for
BS03652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7013-PA | 1..522 | 17..538 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:44:59 Download gff for
BS03652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7013-PA | 1..522 | 17..538 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:46:59 Download gff for
BS03652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Manf-RA | 119..643 | 17..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:51:14 Download gff for
BS03652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Manf-RA | 108..632 | 17..542 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:51:14 Download gff for
BS03652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16349511..16349598 | 17..104 | 100 | -> | Plus |
3R | 16349675..16349799 | 105..229 | 100 | -> | Plus |
3R | 16349886..16350027 | 230..371 | 100 | -> | Plus |
3R | 16350417..16350586 | 372..542 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:46:59 Download gff for
BS03652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12175233..12175320 | 17..104 | 100 | -> | Plus |
arm_3R | 12175397..12175521 | 105..229 | 100 | -> | Plus |
arm_3R | 12175608..12175749 | 230..371 | 100 | -> | Plus |
arm_3R | 12176139..12176308 | 372..542 | 99 | | Plus |
BS03652.3prime Sequence
552 bp (551 high quality bases) assembled on 2005-12-01
> BS03652.3prime
ATGGTCTAGAAAGCTTCTACAGCTCGCTGCGCGAGTACTTGGGCTTCAGC
TCCTCGATACGCTTGATGAAGTCGCCCTTCTCCAGGCAACCGTCACAGCT
CTCGTCCCAGTCGTTGAGGATTTTCTTCAGGTCGCGTACCTTCAGCTTCT
TCAGGTCCACGCTGTTCAGATCGATTTGTTTCTCATAGCGAAGGTCGCAG
ATTTGTGCGTCCTTCTTCTTCAGCTTCTCGCAGATCTTCTCAGCTGGCAT
GGACCAACTGAGGGGTTTGCTCAGCTCGTTGAGGATGCCCGTGGCGGATT
CTTCCAGACCGCCGAGGTAGTAACAGAATCTGTGTTCCTTGTTTTTCTGC
GCTTTGCAGAACTTTTTGAAGGCCGTTTCGATCTGTTTGTAGTCCTTCTT
GGTGGAGTCGTCCAGCGAATCTGCGAACCGCCTAACCGTCTTGACGCAAA
CTTCGCAGTCCTCCTCTTTCAGGGCCAGCGACGTTTGGGCCAACGTCGCC
AGGAAGCCGATCACTACCACCATGTACCACGTCTTCATGTCGACTGATAA
CT
BS03652.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7013-PA | 522 | ARP-like-RA | 1..522 | 538..17 | 2610 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:49:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Manf-RA | 847 | CG7013-RA | 108..630 | 538..16 | 2615 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:49:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16350416..16350584 | 184..16 | 845 | 100 | Minus |
3R | 32079331 | 3R | 16349886..16350027 | 325..184 | 710 | 100 | Minus |
3R | 32079331 | 3R | 16349673..16349799 | 452..326 | 635 | 100 | Minus |
3R | 32079331 | 3R | 16349511..16349598 | 538..451 | 440 | 100 | Minus |
Blast to na_te.dros performed 2015-02-03 13:49:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 1355..1418 | 399..331 | 108 | 66.7 | Minus |
TART-A | 13424 | TART-A 13424bp | 12533..12596 | 399..331 | 108 | 66.7 | Minus |
BS03652.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:20 Download gff for
BS03652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7013-PA | 1..522 | 17..538 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:44:58 Download gff for
BS03652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7013-PA | 1..522 | 17..538 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:04:15 Download gff for
BS03652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Manf-RA | 119..643 | 13..538 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:52:37 Download gff for
BS03652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Manf-RA | 108..632 | 13..538 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:52:37 Download gff for
BS03652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16349511..16349598 | 451..538 | 100 | -> | Minus |
3R | 16349675..16349799 | 326..450 | 100 | -> | Minus |
3R | 16349886..16350027 | 184..325 | 100 | -> | Minus |
3R | 16350417..16350586 | 13..183 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:04:15 Download gff for
BS03652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12175233..12175320 | 451..538 | 100 | -> | Minus |
arm_3R | 12175397..12175521 | 326..450 | 100 | -> | Minus |
arm_3R | 12175608..12175749 | 184..325 | 100 | -> | Minus |
arm_3R | 12176139..12176308 | 13..183 | 99 | | Minus |
BS03652.complete Sequence
554 bp (554 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634738
> BS03652.complete
GAAGTTATCAGTCGACATGAAGACGTGGTACATGGTGGTAGTGATCGGCT
TCCTGGCGACGTTGGCCCAAACGTCGCTGGCCCTGAAAGAGGAGGACTGC
GAAGTTTGCGTCAAGACGGTTAGGCGGTTCGCAGATTCGCTGGACGACTC
CACCAAGAAGGACTACAAACAGATCGAAACGGCCTTCAAAAAGTTCTGCA
AAGCGCAGAAAAACAAGGAACACAGATTCTGTTACTACCTCGGCGGTCTG
GAAGAATCCGCCACGGGCATCCTCAACGAGCTGAGCAAACCCCTCAGTTG
GTCCATGCCAGCTGAGAAGATCTGCGAGAAGCTGAAGAAGAAGGACGCAC
AAATCTGCGACCTTCGCTATGAGAAACAAATCGATCTGAACAGCGTGGAC
CTGAAGAAGCTGAAGGTACGCGACCTGAAGAAAATCCTCAACGACTGGGA
CGAGAGCTGTGACGGTTGCCTGGAGAAGGGCGACTTCATCAAGCGTATCG
AGGAGCTGAAGCCCAAGTACTCGCGCAGCGAGCTGTAGAAGCTTTCTAGA
CCAT
BS03652.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:19:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Manf-RA | 522 | CG7013-PA | 1..522 | 17..538 | 2610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Manf-RA | 847 | CG7013-RA | 108..630 | 17..539 | 2615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16350416..16350584 | 371..539 | 845 | 100 | Plus |
3R | 32079331 | 3R | 16349886..16350027 | 230..371 | 710 | 100 | Plus |
3R | 32079331 | 3R | 16349673..16349799 | 103..229 | 635 | 100 | Plus |
3R | 32079331 | 3R | 16349511..16349598 | 17..104 | 440 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 15:19:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 1355..1418 | 156..224 | 108 | 66.7 | Plus |
TART-A | 13424 | TART-A 13424bp | 12533..12596 | 156..224 | 108 | 66.7 | Plus |
BS03652.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:28:47 Download gff for
BS03652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ARP-like-RA | 1..522 | 17..538 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:11:56 Download gff for
BS03652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ARP-like-RA | 99..623 | 17..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:38 Download gff for
BS03652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Manf-RA | 119..640 | 17..538 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:47 Download gff for
BS03652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ARP-like-RA | 99..623 | 17..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:59 Download gff for
BS03652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Manf-RA | 108..629 | 17..538 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:59 Download gff for
BS03652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16349511..16349598 | 17..104 | 100 | -> | Plus |
3R | 16349675..16349799 | 105..229 | 100 | -> | Plus |
3R | 16349886..16350027 | 230..371 | 100 | -> | Plus |
3R | 16350417..16350583 | 372..538 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:38 Download gff for
BS03652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12175233..12175320 | 17..104 | 100 | -> | Plus |
arm_3R | 12175397..12175521 | 105..229 | 100 | -> | Plus |
arm_3R | 12175608..12175749 | 230..371 | 100 | -> | Plus |
arm_3R | 12176139..12176305 | 372..538 | 100 | | Plus |
BS03652.pep Sequence
Translation from 16 to 537
> BS03652.pep
MKTWYMVVVIGFLATLAQTSLALKEEDCEVCVKTVRRFADSLDDSTKKDY
KQIETAFKKFCKAQKNKEHRFCYYLGGLEESATGILNELSKPLSWSMPAE
KICEKLKKKDAQICDLRYEKQIDLNSVDLKKLKVRDLKKILNDWDESCDG
CLEKGDFIKRIEELKPKYSRSEL*
BS03652.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Manf-PA | 173 | CG7013-PA | 1..173 | 1..173 | 909 | 100 | Plus |