Clone BS03652 Report

Search the DGRC for BS03652

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:36
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptManf-RA
Protein status:BS03652.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03652.5prime Sequence

552 bp (551 high quality bases) assembled on 2005-12-01

> BS03652.5prime
GAAGTTATCAGTCGACATGAAGACGTGGTACATGGTGGTAGTGATCGGCT
TCCTGGCGACGTTGGCCCAAACGTCGCTGGCCCTGAAAGAGGAGGACTGC
GAAGTTTGCGTCAAGACGGTTAGGCGGTTCGCAGATTCGCTGGACGACTC
CACCAAGAAGGACTACAAACAGATCGAAACGGCCTTCAAAAAGTTCTGCA
AAGCGCAGAAAAACAAGGAACACAGATTCTGTTACTACCTCGGCGGTCTG
GAAGAATCCGCCACGGGCATCCTCAACGAGCTGAGCAAACCCCTCAGTTG
GTCCATGCCAGCTGAGAAGATCTGCGAGAAGCTGAAGAAGAAGGACGCAC
AAATCTGCGACCTTCGCTATGAGAAACAAATCGATCTGAACAGCGTGGAC
CTGAAGAAGCTGAAGGTACGCGACCTGAAGAAAATCCTCAACGACTGGGA
CGAGAGCTGTGACGGTTGCCTGGAGAAGGGCGACTTCATCAAGCGTATCG
AGGAGCTGAAGCCCAAGTACTCGCGCAGCGAGCTGTAGAAGCTTTCTAGA
CC

BS03652.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG7013-PA 522 ARP-like-RA 1..522 17..538 2610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
Manf-RA 847 CG7013-RA 108..630 17..539 2615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:18:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16350416..16350584 371..539 845 100 Plus
3R 32079331 3R 16349886..16350027 230..371 710 100 Plus
3R 32079331 3R 16349673..16349799 103..229 635 100 Plus
3R 32079331 3R 16349511..16349598 17..104 440 100 Plus
Blast to na_te.dros performed 2015-02-13 02:18:47
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 1355..1418 156..224 108 66.7 Plus
TART-A 13424 TART-A 13424bp 12533..12596 156..224 108 66.7 Plus

BS03652.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:22 Download gff for BS03652.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7013-PA 1..522 17..538 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:44:59 Download gff for BS03652.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7013-PA 1..522 17..538 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:46:59 Download gff for BS03652.5prime
Subject Subject Range Query Range Percent Splice Strand
Manf-RA 119..643 17..542 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:51:14 Download gff for BS03652.5prime
Subject Subject Range Query Range Percent Splice Strand
Manf-RA 108..632 17..542 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:51:14 Download gff for BS03652.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16349511..16349598 17..104 100 -> Plus
3R 16349675..16349799 105..229 100 -> Plus
3R 16349886..16350027 230..371 100 -> Plus
3R 16350417..16350586 372..542 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:46:59 Download gff for BS03652.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12175233..12175320 17..104 100 -> Plus
arm_3R 12175397..12175521 105..229 100 -> Plus
arm_3R 12175608..12175749 230..371 100 -> Plus
arm_3R 12176139..12176308 372..542 99   Plus

BS03652.3prime Sequence

552 bp (551 high quality bases) assembled on 2005-12-01

> BS03652.3prime
ATGGTCTAGAAAGCTTCTACAGCTCGCTGCGCGAGTACTTGGGCTTCAGC
TCCTCGATACGCTTGATGAAGTCGCCCTTCTCCAGGCAACCGTCACAGCT
CTCGTCCCAGTCGTTGAGGATTTTCTTCAGGTCGCGTACCTTCAGCTTCT
TCAGGTCCACGCTGTTCAGATCGATTTGTTTCTCATAGCGAAGGTCGCAG
ATTTGTGCGTCCTTCTTCTTCAGCTTCTCGCAGATCTTCTCAGCTGGCAT
GGACCAACTGAGGGGTTTGCTCAGCTCGTTGAGGATGCCCGTGGCGGATT
CTTCCAGACCGCCGAGGTAGTAACAGAATCTGTGTTCCTTGTTTTTCTGC
GCTTTGCAGAACTTTTTGAAGGCCGTTTCGATCTGTTTGTAGTCCTTCTT
GGTGGAGTCGTCCAGCGAATCTGCGAACCGCCTAACCGTCTTGACGCAAA
CTTCGCAGTCCTCCTCTTTCAGGGCCAGCGACGTTTGGGCCAACGTCGCC
AGGAAGCCGATCACTACCACCATGTACCACGTCTTCATGTCGACTGATAA
CT

BS03652.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG7013-PA 522 ARP-like-RA 1..522 538..17 2610 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:49:42
Subject Length Description Subject Range Query Range Score Percent Strand
Manf-RA 847 CG7013-RA 108..630 538..16 2615 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16350416..16350584 184..16 845 100 Minus
3R 32079331 3R 16349886..16350027 325..184 710 100 Minus
3R 32079331 3R 16349673..16349799 452..326 635 100 Minus
3R 32079331 3R 16349511..16349598 538..451 440 100 Minus
Blast to na_te.dros performed 2015-02-03 13:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 1355..1418 399..331 108 66.7 Minus
TART-A 13424 TART-A 13424bp 12533..12596 399..331 108 66.7 Minus

BS03652.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:20 Download gff for BS03652.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7013-PA 1..522 17..538 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:44:58 Download gff for BS03652.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7013-PA 1..522 17..538 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:04:15 Download gff for BS03652.3prime
Subject Subject Range Query Range Percent Splice Strand
Manf-RA 119..643 13..538 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:52:37 Download gff for BS03652.3prime
Subject Subject Range Query Range Percent Splice Strand
Manf-RA 108..632 13..538 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:52:37 Download gff for BS03652.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16349511..16349598 451..538 100 -> Minus
3R 16349675..16349799 326..450 100 -> Minus
3R 16349886..16350027 184..325 100 -> Minus
3R 16350417..16350586 13..183 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:04:15 Download gff for BS03652.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12175233..12175320 451..538 100 -> Minus
arm_3R 12175397..12175521 326..450 100 -> Minus
arm_3R 12175608..12175749 184..325 100 -> Minus
arm_3R 12176139..12176308 13..183 99   Minus

BS03652.complete Sequence

554 bp (554 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634738

> BS03652.complete
GAAGTTATCAGTCGACATGAAGACGTGGTACATGGTGGTAGTGATCGGCT
TCCTGGCGACGTTGGCCCAAACGTCGCTGGCCCTGAAAGAGGAGGACTGC
GAAGTTTGCGTCAAGACGGTTAGGCGGTTCGCAGATTCGCTGGACGACTC
CACCAAGAAGGACTACAAACAGATCGAAACGGCCTTCAAAAAGTTCTGCA
AAGCGCAGAAAAACAAGGAACACAGATTCTGTTACTACCTCGGCGGTCTG
GAAGAATCCGCCACGGGCATCCTCAACGAGCTGAGCAAACCCCTCAGTTG
GTCCATGCCAGCTGAGAAGATCTGCGAGAAGCTGAAGAAGAAGGACGCAC
AAATCTGCGACCTTCGCTATGAGAAACAAATCGATCTGAACAGCGTGGAC
CTGAAGAAGCTGAAGGTACGCGACCTGAAGAAAATCCTCAACGACTGGGA
CGAGAGCTGTGACGGTTGCCTGGAGAAGGGCGACTTCATCAAGCGTATCG
AGGAGCTGAAGCCCAAGTACTCGCGCAGCGAGCTGTAGAAGCTTTCTAGA
CCAT

BS03652.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:19:12
Subject Length Description Subject Range Query Range Score Percent Strand
Manf-RA 522 CG7013-PA 1..522 17..538 2610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:13
Subject Length Description Subject Range Query Range Score Percent Strand
Manf-RA 847 CG7013-RA 108..630 17..539 2615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16350416..16350584 371..539 845 100 Plus
3R 32079331 3R 16349886..16350027 230..371 710 100 Plus
3R 32079331 3R 16349673..16349799 103..229 635 100 Plus
3R 32079331 3R 16349511..16349598 17..104 440 100 Plus
Blast to na_te.dros performed 2014-11-27 15:19:11
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 1355..1418 156..224 108 66.7 Plus
TART-A 13424 TART-A 13424bp 12533..12596 156..224 108 66.7 Plus

BS03652.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:28:47 Download gff for BS03652.complete
Subject Subject Range Query Range Percent Splice Strand
ARP-like-RA 1..522 17..538 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:11:56 Download gff for BS03652.complete
Subject Subject Range Query Range Percent Splice Strand
ARP-like-RA 99..623 17..542 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:38 Download gff for BS03652.complete
Subject Subject Range Query Range Percent Splice Strand
Manf-RA 119..640 17..538 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:47 Download gff for BS03652.complete
Subject Subject Range Query Range Percent Splice Strand
ARP-like-RA 99..623 17..542 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:59 Download gff for BS03652.complete
Subject Subject Range Query Range Percent Splice Strand
Manf-RA 108..629 17..538 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:59 Download gff for BS03652.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16349511..16349598 17..104 100 -> Plus
3R 16349675..16349799 105..229 100 -> Plus
3R 16349886..16350027 230..371 100 -> Plus
3R 16350417..16350583 372..538 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:38 Download gff for BS03652.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12175233..12175320 17..104 100 -> Plus
arm_3R 12175397..12175521 105..229 100 -> Plus
arm_3R 12175608..12175749 230..371 100 -> Plus
arm_3R 12176139..12176305 372..538 100   Plus

BS03652.pep Sequence

Translation from 16 to 537

> BS03652.pep
MKTWYMVVVIGFLATLAQTSLALKEEDCEVCVKTVRRFADSLDDSTKKDY
KQIETAFKKFCKAQKNKEHRFCYYLGGLEESATGILNELSKPLSWSMPAE
KICEKLKKKDAQICDLRYEKQIDLNSVDLKKLKVRDLKKILNDWDESCDG
CLEKGDFIKRIEELKPKYSRSEL*

BS03652.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
Manf-PA 173 CG7013-PA 1..173 1..173 909 100 Plus