Clone Sequence Records
BS03654.3prime Sequence
784 bp (783 high quality bases) assembled on 2005-12-01
> BS03654.3prime
ATGGTCTAGAAAGCTTCTAGTATTCGTCCTTCTCGAAAGGGTGGTGAGGG
TGACCGTATTGGTTGAGTAGGGGAACAAGGCGGCCGTTGCACTCGAAGCT
TTCGATGATTTCGATTTCCTCAGGTGTCAGTTCGAAGTCGAAGACCTGGA
AGTTGGACTCGATGCGGTCCTTGGTCACAGATTTGGGGATAACAATGTTG
GCACGCTGAACCTGGTATCGAATAAGGATCTGTCCAGGGGTCTTCTTCTT
CTTAGCGGCAATTTCCTTGATCTTAGCCTCCTCTAGGATGACCGGATCAC
CAGCCTTGGCCCATGGGCGGTTGGGAGATCCCAAGGGACTGTAGGCAGTG
ATTGTAATGTCCTTTGACTTGCAGAAGTCAATCAGCTTCTTCTGGGTCAG
ATATGGATGGCACTCAATCTGATTGGTTACTGGTGGAATAGTGGCCACCT
CAAGCACGCGCTCGATCTGCCTTCTGTTGAAGTTGGAAACACCAATGGAC
TTGACCAGACCCTCTTCCACCAACTTCTCCATGGCCTTCCACGTGTCGAC
GTAATCAACCGGCGAGTACAGCGTCTTGCCATCCTTGTCGGTGGGGAACA
GATCGCATCCCTCCTTGTAGCCCATGGGCCAGTGGATAAGGTACAGATCG
AGGTACTTCAGCTTCAGGGAGCTCAATGTGTTCTCCAATGCCGACTTGAC
AAGATCCGGGCGATGGAAAGTGTTCCACAGTTTGCTGGTGATGAACAGAT
CCTCACGCTTGACAACGCCCTCCTTGATCTTGGC
BS03654.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6084-PA | 951 | CG6084-RA | 184..951 | 784..17 | 3840 | 100 | Minus |
CG6084-PB | 1053 | CG6084-RB | 286..1007 | 784..63 | 3610 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:55:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6084-RC | 1172 | CG6084-RC | 320..1089 | 784..15 | 3850 | 100 | Minus |
CG6084-RA | 1135 | CG6084-RA | 283..1052 | 784..15 | 3850 | 100 | Minus |
CG6084-RD | 1316 | CG6084-RD | 283..1004 | 784..63 | 3610 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:55:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11621483..11621967 | 272..756 | 2425 | 100 | Plus |
3L | 28110227 | 3L | 11621214..11621424 | 63..273 | 1055 | 100 | Plus |
3L | 28110227 | 3L | 11620618..11620665 | 15..62 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 14:55:48 has no hits.
BS03654.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:24 Download gff for
BS03654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6084-PA | 184..951 | 17..784 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:01 Download gff for
BS03654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6084-PA | 184..951 | 17..784 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:22:21 Download gff for
BS03654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6084-RA | 283..1052 | 15..784 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:39:14 Download gff for
BS03654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6084-RA | 283..1052 | 15..784 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:39:14 Download gff for
BS03654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11620618..11620665 | 15..62 | 100 | <- | Plus |
3L | 11621214..11621422 | 63..271 | 100 | <- | Plus |
3L | 11621483..11621966 | 272..755 | 100 | <- | Plus |
3L | 11622033..11622061 | 756..784 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:22:21 Download gff for
BS03654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11613718..11613765 | 15..62 | 100 | <- | Plus |
arm_3L | 11614314..11614522 | 63..271 | 100 | <- | Plus |
arm_3L | 11614583..11615066 | 272..755 | 100 | <- | Plus |
arm_3L | 11615133..11615161 | 756..784 | 100 | | Plus |
BS03654.5prime Sequence
854 bp (698 high quality bases) assembled on 2005-12-01
> BS03654.5prime
GAAGTTATCAGTCGACATGGCTGTACCGAACGTTAAATTCAACAACGGCA
AGGAAGTCCCAATCATTGGACTGGGAACCTGGGGCAGCCCCAAGGGTCAG
GTCACCGAGGCTGTCAAAGTTGCCATTGATGCCGGATACAGGCACATTGA
CTGTGCCTATGTATACCAAAACGAGGATGAGGTCGGAGATGGTGTTGAGG
CCAAGATCAAGGAGGGCGTTGTCAAGCGTGAGGATCTGTTCATCACCAGC
AAACTGTGGAACACTTTCCATCGCCCGGATCTTGTCAAGTCGGCATTGGA
GAACACATTGAGCTCCCTGAAGCTGAAGTACCTCGATCTGTACCTTATCC
ACTGGCCCATGGGCTACAAGGAGGGATGCGATCTGTTCCCCACCGACAAG
GATGGCAAGACGCTGTACTCGCCGGTTGATTACGTCGACACGTGGAAGGC
CATGGAGAAGTTGGTGGAAGAGGGTCTGGTCAAGTCCATTGGTGTTTCCA
ACTTCAACAGAAGGCAGATCGAGCGCGTGCTTGAGGTGGCCACTATTCCA
CCAGTAACCAATCAGATTGAGTGCCATCCATATCTGACCCAGAAGAAGCT
GATTGACTTCTGCAAGTCAAAGGACATTACAATCACTGCCTACAGTCCCT
TGGGATCTCCCAACCGCCCATGGGCCAAGGCTGGTGATCCGGTCATCCTA
GAGGAGGCTAAGATCAAGGAAATTGCCGCTAAGAAGAAGAAGACCCCTGG
ACAGATCCTTATTCGATACCAGGTTCAGCGTGCCAACATTGTTATCCCCA
AATCTGTGACCAAGGACCGCATCGAGTCCAACTTCCAGGTCTTCGACTTC
GAAC
BS03654.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6084-PA | 951 | CG6084-RA | 1..838 | 17..854 | 4190 | 100 | Plus |
CG6084-PB | 1053 | CG6084-RB | 172..940 | 86..854 | 3845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:56:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6084-RD | 1316 | CG6084-RD | 100..937 | 17..854 | 4190 | 100 | Plus |
CG6084-RA | 1135 | CG6084-RA | 100..937 | 17..854 | 4190 | 100 | Plus |
CG6084-RC | 1172 | CG6084-RC | 206..974 | 86..854 | 3845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:56:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11621483..11621967 | 712..228 | 2425 | 100 | Minus |
3L | 28110227 | 3L | 11621281..11621424 | 854..711 | 720 | 100 | Minus |
3L | 28110227 | 3L | 11622033..11622175 | 228..86 | 715 | 100 | Minus |
3L | 28110227 | 3L | 11623548..11623616 | 85..17 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:56:49 has no hits.
BS03654.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:25 Download gff for
BS03654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6084-PA | 1..838 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:02 Download gff for
BS03654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6084-PA | 1..838 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:36:40 Download gff for
BS03654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6084-RA | 91..937 | 6..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:08:54 Download gff for
BS03654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6084-RA | 91..937 | 6..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:08:54 Download gff for
BS03654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11623548..11623625 | 6..85 | 95 | | Minus |
3L | 11621483..11621966 | 229..712 | 100 | <- | Minus |
3L | 11621281..11621422 | 713..854 | 100 | <- | Minus |
3L | 11622033..11622175 | 86..228 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:36:40 Download gff for
BS03654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11614381..11614522 | 713..854 | 100 | <- | Minus |
arm_3L | 11614583..11615066 | 229..712 | 100 | <- | Minus |
arm_3L | 11615133..11615275 | 86..228 | 100 | <- | Minus |
arm_3L | 11616648..11616725 | 6..85 | 95 | | Minus |
BS03654.complete Sequence
983 bp (983 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634739
> BS03654.complete
GAAGTTATCAGTCGACATGGCTGTACCGAACGTTAAATTCAACAACGGCA
AGGAAGTCCCAATCATTGGACTGGGAACCTGGGGCAGCCCCAAGGGTCAG
GTCACCGAGGCTGTCAAAGTTGCCATTGATGCCGGATACAGGCACATTGA
CTGTGCCTATGTATACCAAAACGAGGATGAGGTCGGAGATGGTGTTGAGG
CCAAGATCAAGGAGGGCGTTGTCAAGCGTGAGGATCTGTTCATCACCAGC
AAACTGTGGAACACTTTCCATCGCCCGGATCTTGTCAAGTCGGCATTGGA
GAACACATTGAGCTCCCTGAAGCTGAAGTACCTCGATCTGTACCTTATCC
ACTGGCCCATGGGCTACAAGGAGGGATGCGATCTGTTCCCCACCGACAAG
GATGGCAAGACGCTGTACTCGCCGGTTGATTACGTCGACACGTGGAAGGC
CATGGAGAAGTTGGTGGAAGAGGGTCTGGTCAAGTCCATTGGTGTTTCCA
ACTTCAACAGAAGGCAGATCGAGCGCGTGCTTGAGGTGGCCACTATTCCA
CCAGTAACCAATCAGATTGAGTGCCATCCATATCTGACCCAGAAGAAGCT
GATTGACTTCTGCAAGTCAAAGGACATTACAATCACTGCCTACAGTCCCT
TGGGATCTCCCAACCGCCCATGGGCCAAGGCTGGTGATCCGGTCATCCTA
GAGGAGGCTAAGATCAAGGAAATTGCCGCTAAGAAGAAGAAGACCCCTGG
ACAGATCCTTATTCGATACCAGGTTCAGCGTGCCAACATTGTTATCCCCA
AATCTGTGACCAAGGACCGCATCGAGTCCAACTTCCAGGTCTTCGACTTC
GAACTGACACCTGAGGAAATCGAAATCATCGAAAGCTTCGAGTGCAACGG
CCGCCTTGTTCCCCTACTCAACCAATACGGTCACCCTCACCACCCTTTCG
AGAAGGACGAATACTAGAAGCTTTCTAGACCAT
BS03654.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:55:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6084-RA | 951 | CG6084-PA | 1..951 | 17..967 | 4755 | 100 | Plus |
CG6084-RD | 951 | CG6084-PD | 1..905 | 17..921 | 4525 | 100 | Plus |
CG6084-RC | 1053 | CG6084-PC | 172..1053 | 86..967 | 4410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:55:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6084-RA | 1135 | CG6084-RA | 100..1052 | 17..969 | 4765 | 100 | Plus |
CG6084-RD | 1316 | CG6084-RD | 100..1004 | 17..921 | 4525 | 100 | Plus |
CG6084-RC | 1172 | CG6084-RC | 206..1089 | 86..969 | 4420 | 100 | Plus |
CG6084-RD | 1316 | CG6084-RD | 1186..1233 | 922..969 | 240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:55:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11621483..11621967 | 712..228 | 2425 | 100 | Minus |
3L | 28110227 | 3L | 11621214..11621424 | 921..711 | 1055 | 100 | Minus |
3L | 28110227 | 3L | 11622033..11622175 | 228..86 | 715 | 100 | Minus |
3L | 28110227 | 3L | 11623548..11623616 | 85..17 | 345 | 100 | Minus |
3L | 28110227 | 3L | 11620618..11620665 | 969..922 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:55:39 has no hits.
BS03654.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:28:48 Download gff for
BS03654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6084-RA | 1..951 | 17..967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:11:58 Download gff for
BS03654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6084-RA | 61..1022 | 6..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:41:03 Download gff for
BS03654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6084-RA | 100..1050 | 17..967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:48 Download gff for
BS03654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6084-RA | 61..1022 | 6..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:46:03 Download gff for
BS03654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6084-RA | 100..1050 | 17..967 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:46:03 Download gff for
BS03654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11623548..11623616 | 17..85 | 100 | | Minus |
3L | 11620620..11620665 | 922..967 | 100 | <- | Minus |
3L | 11621214..11621422 | 713..921 | 100 | <- | Minus |
3L | 11621483..11621966 | 229..712 | 100 | <- | Minus |
3L | 11622033..11622175 | 86..228 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:41:03 Download gff for
BS03654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11613720..11613765 | 922..967 | 100 | <- | Minus |
arm_3L | 11614314..11614522 | 713..921 | 100 | <- | Minus |
arm_3L | 11614583..11615066 | 229..712 | 100 | <- | Minus |
arm_3L | 11615133..11615275 | 86..228 | 100 | <- | Minus |
arm_3L | 11616648..11616716 | 17..85 | 100 | | Minus |
BS03654.pep Sequence
Translation from 16 to 966
> BS03654.pep
MAVPNVKFNNGKEVPIIGLGTWGSPKGQVTEAVKVAIDAGYRHIDCAYVY
QNEDEVGDGVEAKIKEGVVKREDLFITSKLWNTFHRPDLVKSALENTLSS
LKLKYLDLYLIHWPMGYKEGCDLFPTDKDGKTLYSPVDYVDTWKAMEKLV
EEGLVKSIGVSNFNRRQIERVLEVATIPPVTNQIECHPYLTQKKLIDFCK
SKDITITAYSPLGSPNRPWAKAGDPVILEEAKIKEIAAKKKKTPGQILIR
YQVQRANIVIPKSVTKDRIESNFQVFDFELTPEEIEIIESFECNGRLVPL
LNQYGHPHHPFEKDEY*
BS03654.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6084-PA | 316 | CG6084-PA | 1..316 | 1..316 | 1673 | 100 | Plus |
CG6084-PC | 350 | CG6084-PC | 38..350 | 4..316 | 1602 | 96.8 | Plus |
CG6084-PD | 316 | CG6084-PD | 1..316 | 1..316 | 1599 | 97.2 | Plus |
CG6084-PB | 350 | CG6084-PB | 38..350 | 4..316 | 1528 | 93.9 | Plus |
CG6083-PA | 322 | CG6083-PA | 1..315 | 1..312 | 890 | 53.3 | Plus |