Clone BS03654 Report

Search the DGRC for BS03654

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:36
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG6084-RA
Protein status:BS03654.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03654.3prime Sequence

784 bp (783 high quality bases) assembled on 2005-12-01

> BS03654.3prime
ATGGTCTAGAAAGCTTCTAGTATTCGTCCTTCTCGAAAGGGTGGTGAGGG
TGACCGTATTGGTTGAGTAGGGGAACAAGGCGGCCGTTGCACTCGAAGCT
TTCGATGATTTCGATTTCCTCAGGTGTCAGTTCGAAGTCGAAGACCTGGA
AGTTGGACTCGATGCGGTCCTTGGTCACAGATTTGGGGATAACAATGTTG
GCACGCTGAACCTGGTATCGAATAAGGATCTGTCCAGGGGTCTTCTTCTT
CTTAGCGGCAATTTCCTTGATCTTAGCCTCCTCTAGGATGACCGGATCAC
CAGCCTTGGCCCATGGGCGGTTGGGAGATCCCAAGGGACTGTAGGCAGTG
ATTGTAATGTCCTTTGACTTGCAGAAGTCAATCAGCTTCTTCTGGGTCAG
ATATGGATGGCACTCAATCTGATTGGTTACTGGTGGAATAGTGGCCACCT
CAAGCACGCGCTCGATCTGCCTTCTGTTGAAGTTGGAAACACCAATGGAC
TTGACCAGACCCTCTTCCACCAACTTCTCCATGGCCTTCCACGTGTCGAC
GTAATCAACCGGCGAGTACAGCGTCTTGCCATCCTTGTCGGTGGGGAACA
GATCGCATCCCTCCTTGTAGCCCATGGGCCAGTGGATAAGGTACAGATCG
AGGTACTTCAGCTTCAGGGAGCTCAATGTGTTCTCCAATGCCGACTTGAC
AAGATCCGGGCGATGGAAAGTGTTCCACAGTTTGCTGGTGATGAACAGAT
CCTCACGCTTGACAACGCCCTCCTTGATCTTGGC

BS03654.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG6084-PA 951 CG6084-RA 184..951 784..17 3840 100 Minus
CG6084-PB 1053 CG6084-RB 286..1007 784..63 3610 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:55:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6084-RC 1172 CG6084-RC 320..1089 784..15 3850 100 Minus
CG6084-RA 1135 CG6084-RA 283..1052 784..15 3850 100 Minus
CG6084-RD 1316 CG6084-RD 283..1004 784..63 3610 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:55:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11621483..11621967 272..756 2425 100 Plus
3L 28110227 3L 11621214..11621424 63..273 1055 100 Plus
3L 28110227 3L 11620618..11620665 15..62 240 100 Plus
Blast to na_te.dros performed on 2015-01-31 14:55:48 has no hits.

BS03654.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:24 Download gff for BS03654.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6084-PA 184..951 17..784 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:01 Download gff for BS03654.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6084-PA 184..951 17..784 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:22:21 Download gff for BS03654.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6084-RA 283..1052 15..784 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:39:14 Download gff for BS03654.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6084-RA 283..1052 15..784 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:39:14 Download gff for BS03654.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11620618..11620665 15..62 100 <- Plus
3L 11621214..11621422 63..271 100 <- Plus
3L 11621483..11621966 272..755 100 <- Plus
3L 11622033..11622061 756..784 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:22:21 Download gff for BS03654.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11613718..11613765 15..62 100 <- Plus
arm_3L 11614314..11614522 63..271 100 <- Plus
arm_3L 11614583..11615066 272..755 100 <- Plus
arm_3L 11615133..11615161 756..784 100   Plus

BS03654.5prime Sequence

854 bp (698 high quality bases) assembled on 2005-12-01

> BS03654.5prime
GAAGTTATCAGTCGACATGGCTGTACCGAACGTTAAATTCAACAACGGCA
AGGAAGTCCCAATCATTGGACTGGGAACCTGGGGCAGCCCCAAGGGTCAG
GTCACCGAGGCTGTCAAAGTTGCCATTGATGCCGGATACAGGCACATTGA
CTGTGCCTATGTATACCAAAACGAGGATGAGGTCGGAGATGGTGTTGAGG
CCAAGATCAAGGAGGGCGTTGTCAAGCGTGAGGATCTGTTCATCACCAGC
AAACTGTGGAACACTTTCCATCGCCCGGATCTTGTCAAGTCGGCATTGGA
GAACACATTGAGCTCCCTGAAGCTGAAGTACCTCGATCTGTACCTTATCC
ACTGGCCCATGGGCTACAAGGAGGGATGCGATCTGTTCCCCACCGACAAG
GATGGCAAGACGCTGTACTCGCCGGTTGATTACGTCGACACGTGGAAGGC
CATGGAGAAGTTGGTGGAAGAGGGTCTGGTCAAGTCCATTGGTGTTTCCA
ACTTCAACAGAAGGCAGATCGAGCGCGTGCTTGAGGTGGCCACTATTCCA
CCAGTAACCAATCAGATTGAGTGCCATCCATATCTGACCCAGAAGAAGCT
GATTGACTTCTGCAAGTCAAAGGACATTACAATCACTGCCTACAGTCCCT
TGGGATCTCCCAACCGCCCATGGGCCAAGGCTGGTGATCCGGTCATCCTA
GAGGAGGCTAAGATCAAGGAAATTGCCGCTAAGAAGAAGAAGACCCCTGG
ACAGATCCTTATTCGATACCAGGTTCAGCGTGCCAACATTGTTATCCCCA
AATCTGTGACCAAGGACCGCATCGAGTCCAACTTCCAGGTCTTCGACTTC
GAAC

BS03654.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6084-PA 951 CG6084-RA 1..838 17..854 4190 100 Plus
CG6084-PB 1053 CG6084-RB 172..940 86..854 3845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6084-RD 1316 CG6084-RD 100..937 17..854 4190 100 Plus
CG6084-RA 1135 CG6084-RA 100..937 17..854 4190 100 Plus
CG6084-RC 1172 CG6084-RC 206..974 86..854 3845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11621483..11621967 712..228 2425 100 Minus
3L 28110227 3L 11621281..11621424 854..711 720 100 Minus
3L 28110227 3L 11622033..11622175 228..86 715 100 Minus
3L 28110227 3L 11623548..11623616 85..17 345 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:56:49 has no hits.

BS03654.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:25 Download gff for BS03654.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6084-PA 1..838 17..854 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:02 Download gff for BS03654.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6084-PA 1..838 17..854 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:36:40 Download gff for BS03654.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6084-RA 91..937 6..854 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:08:54 Download gff for BS03654.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6084-RA 91..937 6..854 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:08:54 Download gff for BS03654.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11623548..11623625 6..85 95   Minus
3L 11621483..11621966 229..712 100 <- Minus
3L 11621281..11621422 713..854 100 <- Minus
3L 11622033..11622175 86..228 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:36:40 Download gff for BS03654.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11614381..11614522 713..854 100 <- Minus
arm_3L 11614583..11615066 229..712 100 <- Minus
arm_3L 11615133..11615275 86..228 100 <- Minus
arm_3L 11616648..11616725 6..85 95   Minus

BS03654.complete Sequence

983 bp (983 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634739

> BS03654.complete
GAAGTTATCAGTCGACATGGCTGTACCGAACGTTAAATTCAACAACGGCA
AGGAAGTCCCAATCATTGGACTGGGAACCTGGGGCAGCCCCAAGGGTCAG
GTCACCGAGGCTGTCAAAGTTGCCATTGATGCCGGATACAGGCACATTGA
CTGTGCCTATGTATACCAAAACGAGGATGAGGTCGGAGATGGTGTTGAGG
CCAAGATCAAGGAGGGCGTTGTCAAGCGTGAGGATCTGTTCATCACCAGC
AAACTGTGGAACACTTTCCATCGCCCGGATCTTGTCAAGTCGGCATTGGA
GAACACATTGAGCTCCCTGAAGCTGAAGTACCTCGATCTGTACCTTATCC
ACTGGCCCATGGGCTACAAGGAGGGATGCGATCTGTTCCCCACCGACAAG
GATGGCAAGACGCTGTACTCGCCGGTTGATTACGTCGACACGTGGAAGGC
CATGGAGAAGTTGGTGGAAGAGGGTCTGGTCAAGTCCATTGGTGTTTCCA
ACTTCAACAGAAGGCAGATCGAGCGCGTGCTTGAGGTGGCCACTATTCCA
CCAGTAACCAATCAGATTGAGTGCCATCCATATCTGACCCAGAAGAAGCT
GATTGACTTCTGCAAGTCAAAGGACATTACAATCACTGCCTACAGTCCCT
TGGGATCTCCCAACCGCCCATGGGCCAAGGCTGGTGATCCGGTCATCCTA
GAGGAGGCTAAGATCAAGGAAATTGCCGCTAAGAAGAAGAAGACCCCTGG
ACAGATCCTTATTCGATACCAGGTTCAGCGTGCCAACATTGTTATCCCCA
AATCTGTGACCAAGGACCGCATCGAGTCCAACTTCCAGGTCTTCGACTTC
GAACTGACACCTGAGGAAATCGAAATCATCGAAAGCTTCGAGTGCAACGG
CCGCCTTGTTCCCCTACTCAACCAATACGGTCACCCTCACCACCCTTTCG
AGAAGGACGAATACTAGAAGCTTTCTAGACCAT

BS03654.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:55:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG6084-RA 951 CG6084-PA 1..951 17..967 4755 100 Plus
CG6084-RD 951 CG6084-PD 1..905 17..921 4525 100 Plus
CG6084-RC 1053 CG6084-PC 172..1053 86..967 4410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG6084-RA 1135 CG6084-RA 100..1052 17..969 4765 100 Plus
CG6084-RD 1316 CG6084-RD 100..1004 17..921 4525 100 Plus
CG6084-RC 1172 CG6084-RC 206..1089 86..969 4420 100 Plus
CG6084-RD 1316 CG6084-RD 1186..1233 922..969 240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11621483..11621967 712..228 2425 100 Minus
3L 28110227 3L 11621214..11621424 921..711 1055 100 Minus
3L 28110227 3L 11622033..11622175 228..86 715 100 Minus
3L 28110227 3L 11623548..11623616 85..17 345 100 Minus
3L 28110227 3L 11620618..11620665 969..922 240 100 Minus
Blast to na_te.dros performed on 2014-11-26 21:55:39 has no hits.

BS03654.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:28:48 Download gff for BS03654.complete
Subject Subject Range Query Range Percent Splice Strand
CG6084-RA 1..951 17..967 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:11:58 Download gff for BS03654.complete
Subject Subject Range Query Range Percent Splice Strand
CG6084-RA 61..1022 6..969 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:41:03 Download gff for BS03654.complete
Subject Subject Range Query Range Percent Splice Strand
CG6084-RA 100..1050 17..967 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:48 Download gff for BS03654.complete
Subject Subject Range Query Range Percent Splice Strand
CG6084-RA 61..1022 6..969 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:46:03 Download gff for BS03654.complete
Subject Subject Range Query Range Percent Splice Strand
CG6084-RA 100..1050 17..967 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:46:03 Download gff for BS03654.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11623548..11623616 17..85 100   Minus
3L 11620620..11620665 922..967 100 <- Minus
3L 11621214..11621422 713..921 100 <- Minus
3L 11621483..11621966 229..712 100 <- Minus
3L 11622033..11622175 86..228 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:41:03 Download gff for BS03654.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11613720..11613765 922..967 100 <- Minus
arm_3L 11614314..11614522 713..921 100 <- Minus
arm_3L 11614583..11615066 229..712 100 <- Minus
arm_3L 11615133..11615275 86..228 100 <- Minus
arm_3L 11616648..11616716 17..85 100   Minus

BS03654.pep Sequence

Translation from 16 to 966

> BS03654.pep
MAVPNVKFNNGKEVPIIGLGTWGSPKGQVTEAVKVAIDAGYRHIDCAYVY
QNEDEVGDGVEAKIKEGVVKREDLFITSKLWNTFHRPDLVKSALENTLSS
LKLKYLDLYLIHWPMGYKEGCDLFPTDKDGKTLYSPVDYVDTWKAMEKLV
EEGLVKSIGVSNFNRRQIERVLEVATIPPVTNQIECHPYLTQKKLIDFCK
SKDITITAYSPLGSPNRPWAKAGDPVILEEAKIKEIAAKKKKTPGQILIR
YQVQRANIVIPKSVTKDRIESNFQVFDFELTPEEIEIIESFECNGRLVPL
LNQYGHPHHPFEKDEY*

BS03654.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG6084-PA 316 CG6084-PA 1..316 1..316 1673 100 Plus
CG6084-PC 350 CG6084-PC 38..350 4..316 1602 96.8 Plus
CG6084-PD 316 CG6084-PD 1..316 1..316 1599 97.2 Plus
CG6084-PB 350 CG6084-PB 38..350 4..316 1528 93.9 Plus
CG6083-PA 322 CG6083-PA 1..315 1..312 890 53.3 Plus