Clone Sequence Records
BS03655.5prime Sequence
464 bp (402 high quality bases) assembled on 2005-11-29
> BS03655.5prime
GAAGTTATCAGTCGACATGAAGACTGTGCCGAAAAAGAAGGAAACGGCCC
TGCGCTTGCGGGAGTCGCGCCGTGAGGAGCAGAAACCAGAGACGACAAAC
CTGCCGCCGGACGACGACGCAGAGTCGGATTTGCCCATTCGGGGCCGTCC
CTCGAAGAAGCTGCTCATCCAGCAGCAACAGCAGCGTCAGTACCAGGTAA
AGCTAGATCCGAAAGTCAAGACGGTCACGTCGGGCTCTAGCGAGAAGCCT
TCGACATCCTCGAGTGCAGCCGCAGCCGGCGCCGGAGGACGCATCAAGGC
CAGGAGAGTGCTCTACAAGAAGAGCGTTGGAGCAGCGGCAGTCGCCCAGA
AGGCGCCCGGCGAGACCTACGTAATGCGCCTGTTTGAGCGAAGTTTGGAC
CTGTNCAAATACCAGGATAAGACTCCTTTGTACCCCATATGCCGCGCATG
GATGGCAAATCACC
BS03655.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15119-PA | 804 | mip40-RA | 1..446 | 17..462 | 2211 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:38:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mip40-RA | 1092 | CG15119-RA | 100..545 | 17..462 | 2219 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:38:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19291652..19292097 | 462..17 | 2219 | 99.8 | Minus |
Blast to na_te.dros performed 2015-02-12 23:38:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2397 | 159..209 | 120 | 70.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6861 | 170..296 | 106 | 58.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1090..1139 | 154..203 | 106 | 68 | Plus |
BS03655.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:27 Download gff for
BS03655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mip40-PA | 1..448 | 17..464 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:06 Download gff for
BS03655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15119-PA | 1..448 | 17..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 16:55:12 Download gff for
BS03655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mip40-RA | 93..547 | 8..464 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:16:33 Download gff for
BS03655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mip40-RA | 93..547 | 8..464 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:16:33 Download gff for
BS03655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19291649..19292104 | 8..464 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 16:55:12 Download gff for
BS03655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15179154..15179609 | 8..464 | 98 | | Minus |
BS03655.3prime Sequence
449 bp (448 high quality bases) assembled on 2005-12-01
> BS03655.3prime
ATGGTCTAGAAAGCTTTCAGTTTTTGCAGACCAAGCTCATAATCTTGTCA
ATAACTTCATATCGCTCCTTTTCATACTTCTTGATATGCTTTATCCAGTG
TCCGCGCACTTTCTTCCAGCGGTTCATATTGGAGGACAGAAGATCGGAGG
TACTGGCACCTTGGAGAGCCTTTTCCCGCTTCTTGTCCTCCTGGCTGAAC
TCCAGACGAGGCGGAATTATGGGCAGATCCGTGGACTTGGCCTGCGGGAG
CTGGTTGATCACCTTTATCTCGCCGCTTTTAATTTGGGACAGGATTTCTT
CGCCGTTGTCCTCACGTTTGGTGGCCGTGAGTGAAGCATCTGTTTGAAAT
GCACCCACAGCTGGATTCTTGGGTTGATTTGCCATCCATGCGCGGCATAT
GGGGTACAAAGGAGTCTTATCCTGGTATTTGGACAGGTCCAAACTTCGC
BS03655.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15119-PA | 804 | mip40-RA | 372..804 | 449..17 | 2165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:01:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mip40-RA | 1092 | CG15119-RA | 471..904 | 449..16 | 2170 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:01:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19291293..19291726 | 16..449 | 2170 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:01:27 has no hits.
BS03655.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:26 Download gff for
BS03655.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mip40-PA | 372..804 | 17..449 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:04 Download gff for
BS03655.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15119-PA | 372..804 | 17..449 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:36:30 Download gff for
BS03655.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mip40-RA | 471..914 | 6..449 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:14:48 Download gff for
BS03655.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mip40-RA | 471..914 | 6..449 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:14:48 Download gff for
BS03655.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19291283..19291726 | 6..449 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:36:30 Download gff for
BS03655.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15178788..15179231 | 6..449 | 99 | | Plus |
BS03655.complete Sequence
836 bp (836 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634740
> BS03655.complete
GAAGTTATCAGTCGACATGAAGACTGTGCCGAAAAAGAAGGAAACGGCCC
TGCGCTTGCGGGAGTCGCGCCGTGAGGAGCAGAAACCAGAGACGACAAAC
CTGCCGCCGGACGACGACGCAGAGTCGGATTTGCCCATTCGGGGCCGTCC
CTCGAAGAAGCTGCTCATCCAGCAGCAACAGCAGCGTCAGTACCAGGTAA
AGCTAGATCCGAAAGTCAAGACGGTCACGTCGGGCTCTAGCGAGAAGCCT
TCGACATCCTCGAGTGCAGCCGCAGCCGGCGCCGGAGGACGCATCAAGGC
CAGGAGAGTGCTCTACAAGAAGAGCGTTGGAGCAGCGGCAGTCGCCCAGA
AGGCGCCCGGCGAGACCTACGTAATGCGCCTGTTTGAGCGAAGTTTGGAC
CTGTCCAAATACCAGGATAAGACTCCTTTGTACCCCATATGCCGCGCATG
GATGGCAAATCAACCCAAGAATCCAGCTGTGGGTGCATTTCAAACAGATG
CTTCACTCACGGCCACCAAACGTGAGGACAACGGCGAAGAAATCCTGTCC
CAAATTAAAAGCGGCGAGATAAAGGTGATCAACCAGCTCCCGCAGGCCAA
GTCCACGGATCTGCCCATAATTCCGCCTCGTCTGGAGTTCAGCCAGGAGG
ACAAGAAGCGGGAAAAGGCTCTCCAAGGTGCCAGTACCTCCGATCTTCTG
TCCTCCAATATGAACCGCTGGAAGAAAGTGCGCGGACACTGGATAAAGCA
TATCAAGAAGTATGAAAAGGAGCGATATGAAGTTATTGACAAGATTATGA
GCTTGGTCTGCAAAAACTGAAAGCTTTCTAGACCAT
BS03655.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:51:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mip40-RA | 804 | CG15119-PA | 1..804 | 17..820 | 4020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:51:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mip40-RA | 1092 | CG15119-RA | 100..904 | 17..821 | 4025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:51:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19291293..19292097 | 821..17 | 4025 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 12:51:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2397 | 159..209 | 120 | 70.6 | Plus |
BS03655.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:28:49 Download gff for
BS03655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mip40-RA | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:12:00 Download gff for
BS03655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mip40-RA | 100..921 | 8..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:32 Download gff for
BS03655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mip40-RA | 100..902 | 17..819 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:50 Download gff for
BS03655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mip40-RA | 100..921 | 8..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:06 Download gff for
BS03655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mip40-RA | 100..902 | 17..819 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:06 Download gff for
BS03655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19291295..19292097 | 17..819 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:32 Download gff for
BS03655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15178800..15179602 | 17..819 | 100 | | Minus |
BS03655.pep Sequence
Translation from 16 to 819
> BS03655.pep
MKTVPKKKETALRLRESRREEQKPETTNLPPDDDAESDLPIRGRPSKKLL
IQQQQQRQYQVKLDPKVKTVTSGSSEKPSTSSSAAAAGAGGRIKARRVLY
KKSVGAAAVAQKAPGETYVMRLFERSLDLSKYQDKTPLYPICRAWMANQP
KNPAVGAFQTDASLTATKREDNGEEILSQIKSGEIKVINQLPQAKSTDLP
IIPPRLEFSQEDKKREKALQGASTSDLLSSNMNRWKKVRGHWIKHIKKYE
KERYEVIDKIMSLVCKN*
BS03655.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mip40-PA | 267 | CG15119-PA | 1..267 | 1..267 | 1358 | 100 | Plus |
