Clone BS03659 Report

Search the DGRC for BS03659

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:36
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptMED9-RC
Protein status:BS03659.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03659.3prime Sequence

465 bp (464 high quality bases) assembled on 2005-12-01

> BS03659.3prime
ATGGTCTAGAAAGCTTCTAGAACTCTGTGTCCTTGTATTTGCGAATTAGC
TGCTGCTTAAGCTTCAGCTGATTTCGCAGTAGTTCCAGTCTCTGTTGCTG
CTCCTCCTTATTGAAATCGATCCCGGGGAGCTGGCGGATTTGCTCGCGTG
CCGATTCGAAGCGTTTTTGAAGTTCAAAGATCTTGTGGTTGCAATCCTGG
GACTCGCGCAGCTTAACGGCGTTCTCCAGAGGATCCTTTTCCACGCAGCG
CACAATGTCGTAGATTATCGGCAGAATCTCAATGTCCAACTGGTCAACCG
TCAGATGGCACTGGCCGCCGATTCCGTTGGATGTTTGCGTCTCCTGCGAT
ATGGTCGGCTCGAAGGGGGAGTTCGAAGTCTGAACCAGGCCGTCGGCGGT
TAGGATGGGTTTTCTGTCCTCGATCTGATTGTTTGGCGACAAATCCATCA
TGTCGACTGATAACT

BS03659.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5134-PC 435 MED9-RC 1..435 451..17 2175 100 Minus
CG5134-PB 528 MED9-RB 1..272 451..180 1360 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:33:17
Subject Length Description Subject Range Query Range Score Percent Strand
MED9-RC 871 CG42517-RC 63..497 451..17 2175 100 Minus
CG42518-RA 871 CG42518-RA 63..497 451..17 2175 100 Minus
CG42518-RB 825 CG42518-RB 43..451 425..17 2045 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:33:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18167317..18167522 451..246 1030 100 Minus
2R 25286936 2R 18167771..18167937 183..17 835 100 Minus
2R 25286936 2R 18167657..18167721 246..182 325 100 Minus
Blast to na_te.dros performed 2015-02-11 18:33:13
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1128..1213 102..15 120 61.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..6854 113..49 115 66.2 Minus
roo 9092 roo DM_ROO 9092bp 1089..1150 108..47 112 64.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6810..6865 105..50 109 66.1 Minus

BS03659.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:30 Download gff for BS03659.3prime
Subject Subject Range Query Range Percent Splice Strand
MED9-PC 1..435 17..451 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:10 Download gff for BS03659.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5134-PC 1..435 17..451 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:48:05 Download gff for BS03659.3prime
Subject Subject Range Query Range Percent Splice Strand
MED9-RC 63..499 13..451 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:09:58 Download gff for BS03659.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42518-RA 63..499 13..451 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:09:58 Download gff for BS03659.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18167317..18167522 246..451 100 -> Minus
2R 18167658..18167721 182..245 100 -> Minus
2R 18167773..18167939 13..181 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:48:05 Download gff for BS03659.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14054822..14055027 246..451 100 -> Minus
arm_2R 14055163..14055226 182..245 100 -> Minus
arm_2R 14055278..14055444 13..181 98   Minus

BS03659.5prime Sequence

465 bp (464 high quality bases) assembled on 2005-11-29

> BS03659.5prime
GAAGTTATCAGTCGACATGATGGATTTGTCGCCAAACAATCAGATCGAGG
ACAGAAAACCCATCCTAACCGCCGACGGCCTGGTTCAGACTTCGAACTCC
CCCTTCGAGCCGACCATATCGCAGGAGACGCAAACATCCAACGGAATCGG
CGGCCAGTGCCATCTGACGGTTGACCAGTTGGACATTGAGATTCTGCCGA
TAATCTACGACATTGTGCGCTGCGTGGAAAAGGATCCTCTGGAGAACGCC
GTTAAGCTGCGCGAGTCCCAGGATTGCAACCACAAGATCTTTGAACTTCA
AAAACGCTTCGAATCGGCACGCGAGCAAATCCGCCAGCTCCCCGGGATCG
ATTTCAATAAGGAGGAGCAGCAACAGAGACTGGAACTACTGCGAAATCAG
CTGAAGCTTAAGCAGCAGCTAATTCGCAAATACAAGGACACAGAGTTCTA
GAAGCTTTCTAGACC

BS03659.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG5134-PC 435 MED9-RC 1..435 17..451 2175 100 Plus
CG5134-PB 528 MED9-RB 1..272 17..288 1360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
MED9-RC 871 CG42517-RC 63..497 17..451 2175 100 Plus
CG42518-RA 871 CG42518-RA 63..497 17..451 2175 100 Plus
CG42518-RB 825 CG42518-RB 43..451 43..451 2045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18167317..18167522 17..222 1030 100 Plus
2R 25286936 2R 18167771..18167937 285..451 835 100 Plus
2R 25286936 2R 18167657..18167721 222..286 325 100 Plus
Blast to na_te.dros performed 2015-02-11 15:39:23
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1128..1213 366..453 120 61.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..6854 355..419 115 66.2 Plus
roo 9092 roo DM_ROO 9092bp 1089..1150 360..421 112 64.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6810..6865 363..418 109 66.1 Plus

BS03659.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:31 Download gff for BS03659.5prime
Subject Subject Range Query Range Percent Splice Strand
MED9-PC 1..435 17..451 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:11 Download gff for BS03659.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5134-PC 1..435 17..451 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:31:00 Download gff for BS03659.5prime
Subject Subject Range Query Range Percent Splice Strand
MED9-RC 63..499 17..455 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:24:03 Download gff for BS03659.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42518-RA 63..499 17..455 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:24:03 Download gff for BS03659.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18167317..18167522 17..222 100 -> Plus
2R 18167658..18167721 223..286 100 -> Plus
2R 18167773..18167939 287..455 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:31:00 Download gff for BS03659.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14054822..14055027 17..222 100 -> Plus
arm_2R 14055163..14055226 223..286 100 -> Plus
arm_2R 14055278..14055444 287..455 98   Plus

BS03659.complete Sequence

467 bp (467 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634741

> BS03659.complete
GAAGTTATCAGTCGACATGATGGATTTGTCGCCAAACAATCAGATCGAGG
ACAGAAAACCCATCCTAACCGCCGACGGCCTGGTTCAGACTTCGAACTCC
CCCTTCGAGCCGACCATATCGCAGGAGACGCAAACATCCAACGGAATCGG
CGGCCAGTGCCATCTGACGGTTGACCAGTTGGACATTGAGATTCTGCCGA
TAATCTACGACATTGTGCGCTGCGTGGAAAAGGATCCTCTGGAGAACGCC
GTTAAGCTGCGCGAGTCCCAGGATTGCAACCACAAGATCTTTGAACTTCA
AAAACGCTTCGAATCGGCACGCGAGCAAATCCGCCAGCTCCCCGGGATCG
ATTTCAATAAGGAGGAGCAGCAACAGAGACTGGAACTACTGCGAAATCAG
CTGAAGCTTAAGCAGCAGCTAATTCGCAAATACAAGGACACAGAGTTCTA
GAAGCTTTCTAGACCAT

BS03659.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
MED9-RC 435 CG42517-PC 1..435 17..451 2175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:15:02
Subject Length Description Subject Range Query Range Score Percent Strand
MED9-RC 871 CG42517-RC 63..497 17..451 2175 100 Plus
CG42518-RA 871 CG42518-RA 63..497 17..451 2175 100 Plus
CG42518-RB 825 CG42518-RB 43..451 43..451 2045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:14:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18167317..18167522 17..222 1030 100 Plus
2R 25286936 2R 18167771..18167937 285..451 835 100 Plus
2R 25286936 2R 18167657..18167721 222..286 325 100 Plus
Blast to na_te.dros performed 2014-11-27 07:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1128..1213 366..453 120 61.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..6854 355..419 115 66.2 Plus
roo 9092 roo DM_ROO 9092bp 1089..1150 360..421 112 64.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6810..6865 363..418 109 66.1 Plus

BS03659.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:29:49 Download gff for BS03659.complete
Subject Subject Range Query Range Percent Splice Strand
MED9-RC 1..435 17..451 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:03 Download gff for BS03659.complete
Subject Subject Range Query Range Percent Splice Strand
MED9-RC 41..477 17..455 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:56 Download gff for BS03659.complete
Subject Subject Range Query Range Percent Splice Strand
MED9-RC 63..497 17..451 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:29:49 Download gff for BS03659.complete
Subject Subject Range Query Range Percent Splice Strand
MED9-RC 41..477 17..455 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:38 Download gff for BS03659.complete
Subject Subject Range Query Range Percent Splice Strand
CG42518-RA 63..497 17..451 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:38 Download gff for BS03659.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18167317..18167522 17..222 100 -> Plus
2R 18167658..18167721 223..286 100 -> Plus
2R 18167773..18167937 287..451 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:56 Download gff for BS03659.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14054822..14055027 17..222 100 -> Plus
arm_2R 14055163..14055226 223..286 100 -> Plus
arm_2R 14055278..14055442 287..451 100   Plus

BS03659.pep Sequence

Translation from 16 to 450

> BS03659.pep
MMDLSPNNQIEDRKPILTADGLVQTSNSPFEPTISQETQTSNGIGGQCHL
TVDQLDIEILPIIYDIVRCVEKDPLENAVKLRESQDCNHKIFELQKRFES
AREQIRQLPGIDFNKEEQQQRLELLRNQLKLKQQLIRKYKDTEF*

BS03659.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
MED9-PC 144 CG42517-PC 1..144 1..144 740 100 Plus