Clone Sequence Records
BS03659.3prime Sequence
465 bp (464 high quality bases) assembled on 2005-12-01
> BS03659.3prime
ATGGTCTAGAAAGCTTCTAGAACTCTGTGTCCTTGTATTTGCGAATTAGC
TGCTGCTTAAGCTTCAGCTGATTTCGCAGTAGTTCCAGTCTCTGTTGCTG
CTCCTCCTTATTGAAATCGATCCCGGGGAGCTGGCGGATTTGCTCGCGTG
CCGATTCGAAGCGTTTTTGAAGTTCAAAGATCTTGTGGTTGCAATCCTGG
GACTCGCGCAGCTTAACGGCGTTCTCCAGAGGATCCTTTTCCACGCAGCG
CACAATGTCGTAGATTATCGGCAGAATCTCAATGTCCAACTGGTCAACCG
TCAGATGGCACTGGCCGCCGATTCCGTTGGATGTTTGCGTCTCCTGCGAT
ATGGTCGGCTCGAAGGGGGAGTTCGAAGTCTGAACCAGGCCGTCGGCGGT
TAGGATGGGTTTTCTGTCCTCGATCTGATTGTTTGGCGACAAATCCATCA
TGTCGACTGATAACT
BS03659.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5134-PC | 435 | MED9-RC | 1..435 | 451..17 | 2175 | 100 | Minus |
CG5134-PB | 528 | MED9-RB | 1..272 | 451..180 | 1360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:33:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED9-RC | 871 | CG42517-RC | 63..497 | 451..17 | 2175 | 100 | Minus |
CG42518-RA | 871 | CG42518-RA | 63..497 | 451..17 | 2175 | 100 | Minus |
CG42518-RB | 825 | CG42518-RB | 43..451 | 425..17 | 2045 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:33:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18167317..18167522 | 451..246 | 1030 | 100 | Minus |
2R | 25286936 | 2R | 18167771..18167937 | 183..17 | 835 | 100 | Minus |
2R | 25286936 | 2R | 18167657..18167721 | 246..182 | 325 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 18:33:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1128..1213 | 102..15 | 120 | 61.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6854 | 113..49 | 115 | 66.2 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1089..1150 | 108..47 | 112 | 64.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6810..6865 | 105..50 | 109 | 66.1 | Minus |
BS03659.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:30 Download gff for
BS03659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED9-PC | 1..435 | 17..451 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:10 Download gff for
BS03659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5134-PC | 1..435 | 17..451 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:48:05 Download gff for
BS03659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED9-RC | 63..499 | 13..451 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:09:58 Download gff for
BS03659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42518-RA | 63..499 | 13..451 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:09:58 Download gff for
BS03659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18167317..18167522 | 246..451 | 100 | -> | Minus |
2R | 18167658..18167721 | 182..245 | 100 | -> | Minus |
2R | 18167773..18167939 | 13..181 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:48:05 Download gff for
BS03659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14054822..14055027 | 246..451 | 100 | -> | Minus |
arm_2R | 14055163..14055226 | 182..245 | 100 | -> | Minus |
arm_2R | 14055278..14055444 | 13..181 | 98 | | Minus |
BS03659.5prime Sequence
465 bp (464 high quality bases) assembled on 2005-11-29
> BS03659.5prime
GAAGTTATCAGTCGACATGATGGATTTGTCGCCAAACAATCAGATCGAGG
ACAGAAAACCCATCCTAACCGCCGACGGCCTGGTTCAGACTTCGAACTCC
CCCTTCGAGCCGACCATATCGCAGGAGACGCAAACATCCAACGGAATCGG
CGGCCAGTGCCATCTGACGGTTGACCAGTTGGACATTGAGATTCTGCCGA
TAATCTACGACATTGTGCGCTGCGTGGAAAAGGATCCTCTGGAGAACGCC
GTTAAGCTGCGCGAGTCCCAGGATTGCAACCACAAGATCTTTGAACTTCA
AAAACGCTTCGAATCGGCACGCGAGCAAATCCGCCAGCTCCCCGGGATCG
ATTTCAATAAGGAGGAGCAGCAACAGAGACTGGAACTACTGCGAAATCAG
CTGAAGCTTAAGCAGCAGCTAATTCGCAAATACAAGGACACAGAGTTCTA
GAAGCTTTCTAGACC
BS03659.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5134-PC | 435 | MED9-RC | 1..435 | 17..451 | 2175 | 100 | Plus |
CG5134-PB | 528 | MED9-RB | 1..272 | 17..288 | 1360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:39:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED9-RC | 871 | CG42517-RC | 63..497 | 17..451 | 2175 | 100 | Plus |
CG42518-RA | 871 | CG42518-RA | 63..497 | 17..451 | 2175 | 100 | Plus |
CG42518-RB | 825 | CG42518-RB | 43..451 | 43..451 | 2045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:39:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18167317..18167522 | 17..222 | 1030 | 100 | Plus |
2R | 25286936 | 2R | 18167771..18167937 | 285..451 | 835 | 100 | Plus |
2R | 25286936 | 2R | 18167657..18167721 | 222..286 | 325 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 15:39:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1128..1213 | 366..453 | 120 | 61.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6854 | 355..419 | 115 | 66.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1089..1150 | 360..421 | 112 | 64.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6810..6865 | 363..418 | 109 | 66.1 | Plus |
BS03659.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:31 Download gff for
BS03659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED9-PC | 1..435 | 17..451 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:11 Download gff for
BS03659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5134-PC | 1..435 | 17..451 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:31:00 Download gff for
BS03659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED9-RC | 63..499 | 17..455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:24:03 Download gff for
BS03659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42518-RA | 63..499 | 17..455 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:24:03 Download gff for
BS03659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18167317..18167522 | 17..222 | 100 | -> | Plus |
2R | 18167658..18167721 | 223..286 | 100 | -> | Plus |
2R | 18167773..18167939 | 287..455 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:31:00 Download gff for
BS03659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14054822..14055027 | 17..222 | 100 | -> | Plus |
arm_2R | 14055163..14055226 | 223..286 | 100 | -> | Plus |
arm_2R | 14055278..14055444 | 287..455 | 98 | | Plus |
BS03659.complete Sequence
467 bp (467 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634741
> BS03659.complete
GAAGTTATCAGTCGACATGATGGATTTGTCGCCAAACAATCAGATCGAGG
ACAGAAAACCCATCCTAACCGCCGACGGCCTGGTTCAGACTTCGAACTCC
CCCTTCGAGCCGACCATATCGCAGGAGACGCAAACATCCAACGGAATCGG
CGGCCAGTGCCATCTGACGGTTGACCAGTTGGACATTGAGATTCTGCCGA
TAATCTACGACATTGTGCGCTGCGTGGAAAAGGATCCTCTGGAGAACGCC
GTTAAGCTGCGCGAGTCCCAGGATTGCAACCACAAGATCTTTGAACTTCA
AAAACGCTTCGAATCGGCACGCGAGCAAATCCGCCAGCTCCCCGGGATCG
ATTTCAATAAGGAGGAGCAGCAACAGAGACTGGAACTACTGCGAAATCAG
CTGAAGCTTAAGCAGCAGCTAATTCGCAAATACAAGGACACAGAGTTCTA
GAAGCTTTCTAGACCAT
BS03659.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:15:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED9-RC | 435 | CG42517-PC | 1..435 | 17..451 | 2175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:15:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED9-RC | 871 | CG42517-RC | 63..497 | 17..451 | 2175 | 100 | Plus |
CG42518-RA | 871 | CG42518-RA | 63..497 | 17..451 | 2175 | 100 | Plus |
CG42518-RB | 825 | CG42518-RB | 43..451 | 43..451 | 2045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:14:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18167317..18167522 | 17..222 | 1030 | 100 | Plus |
2R | 25286936 | 2R | 18167771..18167937 | 285..451 | 835 | 100 | Plus |
2R | 25286936 | 2R | 18167657..18167721 | 222..286 | 325 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 07:14:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1128..1213 | 366..453 | 120 | 61.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6854 | 355..419 | 115 | 66.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1089..1150 | 360..421 | 112 | 64.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6810..6865 | 363..418 | 109 | 66.1 | Plus |
BS03659.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:29:49 Download gff for
BS03659.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED9-RC | 1..435 | 17..451 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:03 Download gff for
BS03659.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED9-RC | 41..477 | 17..455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:56 Download gff for
BS03659.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED9-RC | 63..497 | 17..451 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:29:49 Download gff for
BS03659.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED9-RC | 41..477 | 17..455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:38 Download gff for
BS03659.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42518-RA | 63..497 | 17..451 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:38 Download gff for
BS03659.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18167317..18167522 | 17..222 | 100 | -> | Plus |
2R | 18167658..18167721 | 223..286 | 100 | -> | Plus |
2R | 18167773..18167937 | 287..451 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:56 Download gff for
BS03659.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14054822..14055027 | 17..222 | 100 | -> | Plus |
arm_2R | 14055163..14055226 | 223..286 | 100 | -> | Plus |
arm_2R | 14055278..14055442 | 287..451 | 100 | | Plus |
BS03659.pep Sequence
Translation from 16 to 450
> BS03659.pep
MMDLSPNNQIEDRKPILTADGLVQTSNSPFEPTISQETQTSNGIGGQCHL
TVDQLDIEILPIIYDIVRCVEKDPLENAVKLRESQDCNHKIFELQKRFES
AREQIRQLPGIDFNKEEQQQRLELLRNQLKLKQQLIRKYKDTEF*
BS03659.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED9-PC | 144 | CG42517-PC | 1..144 | 1..144 | 740 | 100 | Plus |