Clone Sequence Records
BS03662.3prime Sequence
906 bp (884 high quality bases) assembled on 2005-12-01
> BS03662.3prime
ATGGTCTAGAAAGCTTTTATTCTTTACTCTCTCCTGTGCCGAAGAACAAG
TCCAATGTGTTTTGGTAGTATAACGCAGCCAGCTGTTCTTTAGGCTCTTG
TTTGATTCCGGCAATAGACTCCAAAACTTGGCTGATTTGGCAAGGCTCAC
AGCGTCCGTCTATTAGGGATTCAGCTGTCCATTTCTCTTTCTTCTTGACG
GTGGGAAACTTGGTGGTCACGTGCTTGTGTCCAGCATGCGAGGGTCGAAT
ACCACACCACGGGCAGTCGGTTTCTAGCATTATCCTGTCGTTGGGTAGCT
TGCGCACCACTTCTGCGTTTTCATCCGTCTTTAGGGAGCACCCATTGAAG
CCTATGTAGAGACCGCCGAAGGCGAGGATGCGCTGGGCCTCCTCCAAAGT
TCCTGTAAAGCTGTGCACCACTCCGCCGCCGCACTCCTCGATCTTGTTCC
GATTTCTTTCCAGGATGCCCATGAAGTCCTCGGCAGCATTTCTCATGTGC
AGAAAGAGAGGCAGTTTGAACTCGGCCGCTAGGTCCAGCTGCTTCTCGAA
GTACAGACGCTGGGTTTCCTGGGCGCAGAAGTGCAAGCGATCGTAGTCTA
GACCACATTCTCCTACGGCCCGCACCTTGGTTCGATTTGCCTTGATCCTG
GATCGCAACTGGTCATAGTAGCCCTCTGGGTCTGGTACGAATTCCTCGCA
CCGGGTGGGATGTGTTCCCACTGTCGTGTAGATGCGCTCATCCTTGGAGG
CCAGTTCCAGTGCCTCATCCACATCCTTCAGGCAGCCGGCGGTAACGATG
ACTTTCTGCAGTCCCTGTTGCCACGCGCGCTCCAAGACGATGTGCAGGTC
GGGCTCGTGCTTCTGGGTTCCGCCGTAGCAGCCCTGGAACATGTCGACTG
ATAACT
BS03662.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3358-PB | 942 | CG3358-RB | 66..942 | 893..17 | 4385 | 100 | Minus |
CG3358-PA | 876 | CG3358-RA | 1..876 | 892..17 | 4380 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:36:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3358-RG | 968 | CG3358-RG | 78..956 | 893..15 | 4395 | 100 | Minus |
CG3358-RF | 1216 | CG3358-RF | 78..956 | 893..15 | 4395 | 100 | Minus |
CG3358-RE | 950 | CG3358-RE | 60..938 | 893..15 | 4395 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:36:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6923879..6924486 | 739..132 | 3040 | 100 | Minus |
2R | 25286936 | 2R | 6923505..6923659 | 893..739 | 775 | 100 | Minus |
2R | 25286936 | 2R | 6924551..6924669 | 133..15 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:36:07 has no hits.
BS03662.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:33 Download gff for
BS03662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3358-PB | 66..942 | 17..893 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:14 Download gff for
BS03662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3358-PB | 66..942 | 17..893 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:48:36 Download gff for
BS03662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3358-RE | 60..938 | 15..893 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:04:36 Download gff for
BS03662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3358-RE | 60..938 | 15..893 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:04:36 Download gff for
BS03662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6923505..6923659 | 739..893 | 100 | -> | Minus |
2R | 6923880..6924486 | 132..738 | 100 | -> | Minus |
2R | 6924553..6924669 | 15..131 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:48:36 Download gff for
BS03662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2811010..2811164 | 739..893 | 100 | -> | Minus |
arm_2R | 2811385..2811991 | 132..738 | 100 | -> | Minus |
arm_2R | 2812058..2812174 | 15..131 | 100 | | Minus |
BS03662.5prime Sequence
800 bp (798 high quality bases) assembled on 2005-11-29
> BS03662.5prime
GAAGTTATCAGTCGACATGTTCCAGGGCTGCTACGGCGGAACCCAGAAGC
ACGAGCCCGACCTGCACATCGTCTTGGAGCGCGCGTGGCAACAGGGACTG
CAGAAAGTCATCGTTACCGCCGGCTGCCTGAAGGATGTGGATGAGGCACT
GGAACTGGCCTCCAAGGATGAGCGCATCTACACGACAGTGGGAACACATC
CCACCCGGTGCGAGGAATTCGTACCAGACCCAGAGGGCTACTATGACCAG
TTGCGATCCAGGATCAAGGCAAATCGAACCAAGGTGCGGGCCGTAGGAGA
ATGTGGTCTAGACTACGATCGCTTGCACTTCTGCGCCCAGGAAACCCAGC
GTCTGTACTTCGAGAAGCAGCTGGACCTAGCGGCCGAGTTCAAACTGCCT
CTCTTTCTGCACATGAGAAATGCTGCCGAGGACTTCATGGGCATCCTGGA
AAGAAATCGGAACAAGATCGAGGAGTGCGGCGGCGGAGTGGTGCACAGCT
TTACAGGAACTTTGGAGGAGGCCCAGCGCATCCTCGCCTTCGGCGGTCTC
TACATAGGCTTCAATGGGTGCTCCCTAAAGACGGATGAAAACGCAGAAGT
GGTGCGCAAGCTACCCAACGACAGGATAATGCTAGAAACCGACTGCCCGT
GGTGTGGTATTCGACCCTCGCATGCTGGACACAAGCACGTGACCACCAAG
TTTCCCACCGTCAAGAAGAAAGAGAAATGGACAGCTGAATCCCTAATAGA
CGGACGCTGTGAGCCTTGCCAAATCAGCCAAGTTTTGGAGTCTATTGCCG
BS03662.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3358-PB | 942 | CG3358-RB | 66..850 | 16..800 | 3925 | 100 | Plus |
CG3358-PA | 876 | CG3358-RA | 1..784 | 17..800 | 3920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:39:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3358-RG | 968 | CG3358-RG | 78..862 | 16..800 | 3925 | 100 | Plus |
CG3358-RF | 1216 | CG3358-RF | 78..862 | 16..800 | 3925 | 100 | Plus |
CG3358-RE | 950 | CG3358-RE | 60..844 | 16..800 | 3925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:39:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6923879..6924486 | 170..777 | 3040 | 100 | Plus |
2R | 25286936 | 2R | 6923505..6923659 | 16..170 | 775 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:39:19 has no hits.
BS03662.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:34 Download gff for
BS03662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3358-PB | 66..850 | 16..800 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:16 Download gff for
BS03662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3358-PB | 66..850 | 16..800 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:09:28 Download gff for
BS03662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3358-RE | 60..844 | 16..800 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:41 Download gff for
BS03662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3358-RE | 60..844 | 16..800 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:41 Download gff for
BS03662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6923505..6923659 | 16..170 | 100 | -> | Plus |
2R | 6923880..6924486 | 171..777 | 100 | -> | Plus |
2R | 6924553..6924575 | 778..800 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:09:28 Download gff for
BS03662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2811010..2811164 | 16..170 | 100 | -> | Plus |
arm_2R | 2811385..2811991 | 171..777 | 100 | -> | Plus |
arm_2R | 2812058..2812080 | 778..800 | 100 | | Plus |
BS03662.complete Sequence
908 bp (908 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634742
> BS03662.complete
GAAGTTATCAGTCGACATGTTCCAGGGCTGCTACGGCGGAACCCAGAAGC
ACGAGCCCGACCTGCACATCGTCTTGGAGCGCGCGTGGCAACAGGGACTG
CAGAAAGTCATCGTTACCGCCGGCTGCCTGAAGGATGTGGATGAGGCACT
GGAACTGGCCTCCAAGGATGAGCGCATCTACACGACAGTGGGAACACATC
CCACCCGGTGCGAGGAATTCGTACCAGACCCAGAGGGCTACTATGACCAG
TTGCGATCCAGGATCAAGGCAAATCGAACCAAGGTGCGGGCCGTAGGAGA
ATGTGGTCTAGACTACGATCGCTTGCACTTCTGCGCCCAGGAAACCCAGC
GTCTGTACTTCGAGAAGCAGCTGGACCTAGCGGCCGAGTTCAAACTGCCT
CTCTTTCTGCACATGAGAAATGCTGCCGAGGACTTCATGGGCATCCTGGA
AAGAAATCGGAACAAGATCGAGGAGTGCGGCGGCGGAGTGGTGCACAGCT
TTACAGGAACTTTGGAGGAGGCCCAGCGCATCCTCGCCTTCGGCGGTCTC
TACATAGGCTTCAATGGGTGCTCCCTAAAGACGGATGAAAACGCAGAAGT
GGTGCGCAAGCTACCCAACGACAGGATAATGCTAGAAACCGACTGCCCGT
GGTGTGGTATTCGACCCTCGCATGCTGGACACAAGCACGTGACCACCAAG
TTTCCCACCGTCAAGAAGAAAGAGAAATGGACAGCTGAATCCCTAATAGA
CGGACGCTGTGAGCCTTGCCAAATCAGCCAAGTTTTGGAGTCTATTGCCG
GAATCAAACAAGAGCCTAAAGAACAGCTGGCTGCGTTATACTACCAAAAC
ACATTGGACTTGTTCTTCGGCACAGGAGAGAGTAAAGAATAAAAGCTTTC
TAGACCAT
BS03662.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:52:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3358-RG | 876 | CG3358-PG | 1..876 | 17..892 | 4380 | 100 | Plus |
CG3358-RF | 876 | CG3358-PF | 1..876 | 17..892 | 4380 | 100 | Plus |
CG3358-RE | 876 | CG3358-PE | 1..876 | 17..892 | 4380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3358-RG | 968 | CG3358-RG | 78..956 | 16..894 | 4395 | 100 | Plus |
CG3358-RF | 1216 | CG3358-RF | 78..956 | 16..894 | 4395 | 100 | Plus |
CG3358-RE | 950 | CG3358-RE | 60..938 | 16..894 | 4395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6923879..6924486 | 170..777 | 3040 | 100 | Plus |
2R | 25286936 | 2R | 6923505..6923659 | 16..170 | 775 | 100 | Plus |
2R | 25286936 | 2R | 6924551..6924669 | 776..894 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:52:32 has no hits.
BS03662.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:28:51 Download gff for
BS03662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3358-RC | 45..921 | 16..892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:12:01 Download gff for
BS03662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3358-RC | 73..951 | 16..894 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:59 Download gff for
BS03662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3358-RE | 66..927 | 22..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:51 Download gff for
BS03662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3358-RC | 73..951 | 16..894 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:29 Download gff for
BS03662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3358-RE | 66..927 | 22..883 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:29 Download gff for
BS03662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6923511..6923659 | 22..170 | 100 | -> | Plus |
2R | 6923880..6924486 | 171..777 | 100 | -> | Plus |
2R | 6924553..6924658 | 778..883 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:59 Download gff for
BS03662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2811016..2811164 | 22..170 | 100 | -> | Plus |
arm_2R | 2811385..2811991 | 171..777 | 100 | -> | Plus |
arm_2R | 2812058..2812163 | 778..883 | 100 | | Plus |
BS03662.pep Sequence
Translation from 16 to 891
> BS03662.pep
MFQGCYGGTQKHEPDLHIVLERAWQQGLQKVIVTAGCLKDVDEALELASK
DERIYTTVGTHPTRCEEFVPDPEGYYDQLRSRIKANRTKVRAVGECGLDY
DRLHFCAQETQRLYFEKQLDLAAEFKLPLFLHMRNAAEDFMGILERNRNK
IEECGGGVVHSFTGTLEEAQRILAFGGLYIGFNGCSLKTDENAEVVRKLP
NDRIMLETDCPWCGIRPSHAGHKHVTTKFPTVKKKEKWTAESLIDGRCEP
CQISQVLESIAGIKQEPKEQLAALYYQNTLDLFFGTGESKE*
BS03662.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3358-PG | 291 | CG3358-PG | 1..291 | 1..291 | 1559 | 100 | Plus |
CG3358-PF | 291 | CG3358-PF | 1..291 | 1..291 | 1559 | 100 | Plus |
CG3358-PE | 291 | CG3358-PE | 1..291 | 1..291 | 1559 | 100 | Plus |
CG3308-PA | 319 | CG3308-PA | 47..316 | 10..283 | 272 | 31.4 | Plus |