Clone BS03662 Report

Search the DGRC for BS03662

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:36
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptCG3358-RE
Protein status:BS03662.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03662.3prime Sequence

906 bp (884 high quality bases) assembled on 2005-12-01

> BS03662.3prime
ATGGTCTAGAAAGCTTTTATTCTTTACTCTCTCCTGTGCCGAAGAACAAG
TCCAATGTGTTTTGGTAGTATAACGCAGCCAGCTGTTCTTTAGGCTCTTG
TTTGATTCCGGCAATAGACTCCAAAACTTGGCTGATTTGGCAAGGCTCAC
AGCGTCCGTCTATTAGGGATTCAGCTGTCCATTTCTCTTTCTTCTTGACG
GTGGGAAACTTGGTGGTCACGTGCTTGTGTCCAGCATGCGAGGGTCGAAT
ACCACACCACGGGCAGTCGGTTTCTAGCATTATCCTGTCGTTGGGTAGCT
TGCGCACCACTTCTGCGTTTTCATCCGTCTTTAGGGAGCACCCATTGAAG
CCTATGTAGAGACCGCCGAAGGCGAGGATGCGCTGGGCCTCCTCCAAAGT
TCCTGTAAAGCTGTGCACCACTCCGCCGCCGCACTCCTCGATCTTGTTCC
GATTTCTTTCCAGGATGCCCATGAAGTCCTCGGCAGCATTTCTCATGTGC
AGAAAGAGAGGCAGTTTGAACTCGGCCGCTAGGTCCAGCTGCTTCTCGAA
GTACAGACGCTGGGTTTCCTGGGCGCAGAAGTGCAAGCGATCGTAGTCTA
GACCACATTCTCCTACGGCCCGCACCTTGGTTCGATTTGCCTTGATCCTG
GATCGCAACTGGTCATAGTAGCCCTCTGGGTCTGGTACGAATTCCTCGCA
CCGGGTGGGATGTGTTCCCACTGTCGTGTAGATGCGCTCATCCTTGGAGG
CCAGTTCCAGTGCCTCATCCACATCCTTCAGGCAGCCGGCGGTAACGATG
ACTTTCTGCAGTCCCTGTTGCCACGCGCGCTCCAAGACGATGTGCAGGTC
GGGCTCGTGCTTCTGGGTTCCGCCGTAGCAGCCCTGGAACATGTCGACTG
ATAACT

BS03662.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3358-PB 942 CG3358-RB 66..942 893..17 4385 100 Minus
CG3358-PA 876 CG3358-RA 1..876 892..17 4380 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:36:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3358-RG 968 CG3358-RG 78..956 893..15 4395 100 Minus
CG3358-RF 1216 CG3358-RF 78..956 893..15 4395 100 Minus
CG3358-RE 950 CG3358-RE 60..938 893..15 4395 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6923879..6924486 739..132 3040 100 Minus
2R 25286936 2R 6923505..6923659 893..739 775 100 Minus
2R 25286936 2R 6924551..6924669 133..15 595 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:36:07 has no hits.

BS03662.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:33 Download gff for BS03662.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3358-PB 66..942 17..893 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:14 Download gff for BS03662.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3358-PB 66..942 17..893 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:48:36 Download gff for BS03662.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3358-RE 60..938 15..893 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:04:36 Download gff for BS03662.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3358-RE 60..938 15..893 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:04:36 Download gff for BS03662.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6923505..6923659 739..893 100 -> Minus
2R 6923880..6924486 132..738 100 -> Minus
2R 6924553..6924669 15..131 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:48:36 Download gff for BS03662.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2811010..2811164 739..893 100 -> Minus
arm_2R 2811385..2811991 132..738 100 -> Minus
arm_2R 2812058..2812174 15..131 100   Minus

BS03662.5prime Sequence

800 bp (798 high quality bases) assembled on 2005-11-29

> BS03662.5prime
GAAGTTATCAGTCGACATGTTCCAGGGCTGCTACGGCGGAACCCAGAAGC
ACGAGCCCGACCTGCACATCGTCTTGGAGCGCGCGTGGCAACAGGGACTG
CAGAAAGTCATCGTTACCGCCGGCTGCCTGAAGGATGTGGATGAGGCACT
GGAACTGGCCTCCAAGGATGAGCGCATCTACACGACAGTGGGAACACATC
CCACCCGGTGCGAGGAATTCGTACCAGACCCAGAGGGCTACTATGACCAG
TTGCGATCCAGGATCAAGGCAAATCGAACCAAGGTGCGGGCCGTAGGAGA
ATGTGGTCTAGACTACGATCGCTTGCACTTCTGCGCCCAGGAAACCCAGC
GTCTGTACTTCGAGAAGCAGCTGGACCTAGCGGCCGAGTTCAAACTGCCT
CTCTTTCTGCACATGAGAAATGCTGCCGAGGACTTCATGGGCATCCTGGA
AAGAAATCGGAACAAGATCGAGGAGTGCGGCGGCGGAGTGGTGCACAGCT
TTACAGGAACTTTGGAGGAGGCCCAGCGCATCCTCGCCTTCGGCGGTCTC
TACATAGGCTTCAATGGGTGCTCCCTAAAGACGGATGAAAACGCAGAAGT
GGTGCGCAAGCTACCCAACGACAGGATAATGCTAGAAACCGACTGCCCGT
GGTGTGGTATTCGACCCTCGCATGCTGGACACAAGCACGTGACCACCAAG
TTTCCCACCGTCAAGAAGAAAGAGAAATGGACAGCTGAATCCCTAATAGA
CGGACGCTGTGAGCCTTGCCAAATCAGCCAAGTTTTGGAGTCTATTGCCG

BS03662.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG3358-PB 942 CG3358-RB 66..850 16..800 3925 100 Plus
CG3358-PA 876 CG3358-RA 1..784 17..800 3920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:39:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3358-RG 968 CG3358-RG 78..862 16..800 3925 100 Plus
CG3358-RF 1216 CG3358-RF 78..862 16..800 3925 100 Plus
CG3358-RE 950 CG3358-RE 60..844 16..800 3925 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6923879..6924486 170..777 3040 100 Plus
2R 25286936 2R 6923505..6923659 16..170 775 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:39:19 has no hits.

BS03662.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:34 Download gff for BS03662.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3358-PB 66..850 16..800 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:16 Download gff for BS03662.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3358-PB 66..850 16..800 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:09:28 Download gff for BS03662.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3358-RE 60..844 16..800 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:41 Download gff for BS03662.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3358-RE 60..844 16..800 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:41 Download gff for BS03662.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6923505..6923659 16..170 100 -> Plus
2R 6923880..6924486 171..777 100 -> Plus
2R 6924553..6924575 778..800 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:09:28 Download gff for BS03662.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2811010..2811164 16..170 100 -> Plus
arm_2R 2811385..2811991 171..777 100 -> Plus
arm_2R 2812058..2812080 778..800 100   Plus

BS03662.complete Sequence

908 bp (908 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634742

> BS03662.complete
GAAGTTATCAGTCGACATGTTCCAGGGCTGCTACGGCGGAACCCAGAAGC
ACGAGCCCGACCTGCACATCGTCTTGGAGCGCGCGTGGCAACAGGGACTG
CAGAAAGTCATCGTTACCGCCGGCTGCCTGAAGGATGTGGATGAGGCACT
GGAACTGGCCTCCAAGGATGAGCGCATCTACACGACAGTGGGAACACATC
CCACCCGGTGCGAGGAATTCGTACCAGACCCAGAGGGCTACTATGACCAG
TTGCGATCCAGGATCAAGGCAAATCGAACCAAGGTGCGGGCCGTAGGAGA
ATGTGGTCTAGACTACGATCGCTTGCACTTCTGCGCCCAGGAAACCCAGC
GTCTGTACTTCGAGAAGCAGCTGGACCTAGCGGCCGAGTTCAAACTGCCT
CTCTTTCTGCACATGAGAAATGCTGCCGAGGACTTCATGGGCATCCTGGA
AAGAAATCGGAACAAGATCGAGGAGTGCGGCGGCGGAGTGGTGCACAGCT
TTACAGGAACTTTGGAGGAGGCCCAGCGCATCCTCGCCTTCGGCGGTCTC
TACATAGGCTTCAATGGGTGCTCCCTAAAGACGGATGAAAACGCAGAAGT
GGTGCGCAAGCTACCCAACGACAGGATAATGCTAGAAACCGACTGCCCGT
GGTGTGGTATTCGACCCTCGCATGCTGGACACAAGCACGTGACCACCAAG
TTTCCCACCGTCAAGAAGAAAGAGAAATGGACAGCTGAATCCCTAATAGA
CGGACGCTGTGAGCCTTGCCAAATCAGCCAAGTTTTGGAGTCTATTGCCG
GAATCAAACAAGAGCCTAAAGAACAGCTGGCTGCGTTATACTACCAAAAC
ACATTGGACTTGTTCTTCGGCACAGGAGAGAGTAAAGAATAAAAGCTTTC
TAGACCAT

BS03662.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:52:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG3358-RG 876 CG3358-PG 1..876 17..892 4380 100 Plus
CG3358-RF 876 CG3358-PF 1..876 17..892 4380 100 Plus
CG3358-RE 876 CG3358-PE 1..876 17..892 4380 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3358-RG 968 CG3358-RG 78..956 16..894 4395 100 Plus
CG3358-RF 1216 CG3358-RF 78..956 16..894 4395 100 Plus
CG3358-RE 950 CG3358-RE 60..938 16..894 4395 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6923879..6924486 170..777 3040 100 Plus
2R 25286936 2R 6923505..6923659 16..170 775 100 Plus
2R 25286936 2R 6924551..6924669 776..894 595 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:52:32 has no hits.

BS03662.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:28:51 Download gff for BS03662.complete
Subject Subject Range Query Range Percent Splice Strand
CG3358-RC 45..921 16..892 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:12:01 Download gff for BS03662.complete
Subject Subject Range Query Range Percent Splice Strand
CG3358-RC 73..951 16..894 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:59 Download gff for BS03662.complete
Subject Subject Range Query Range Percent Splice Strand
CG3358-RE 66..927 22..883 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:51 Download gff for BS03662.complete
Subject Subject Range Query Range Percent Splice Strand
CG3358-RC 73..951 16..894 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:29 Download gff for BS03662.complete
Subject Subject Range Query Range Percent Splice Strand
CG3358-RE 66..927 22..883 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:29 Download gff for BS03662.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6923511..6923659 22..170 100 -> Plus
2R 6923880..6924486 171..777 100 -> Plus
2R 6924553..6924658 778..883 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:59 Download gff for BS03662.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2811016..2811164 22..170 100 -> Plus
arm_2R 2811385..2811991 171..777 100 -> Plus
arm_2R 2812058..2812163 778..883 100   Plus

BS03662.pep Sequence

Translation from 16 to 891

> BS03662.pep
MFQGCYGGTQKHEPDLHIVLERAWQQGLQKVIVTAGCLKDVDEALELASK
DERIYTTVGTHPTRCEEFVPDPEGYYDQLRSRIKANRTKVRAVGECGLDY
DRLHFCAQETQRLYFEKQLDLAAEFKLPLFLHMRNAAEDFMGILERNRNK
IEECGGGVVHSFTGTLEEAQRILAFGGLYIGFNGCSLKTDENAEVVRKLP
NDRIMLETDCPWCGIRPSHAGHKHVTTKFPTVKKKEKWTAESLIDGRCEP
CQISQVLESIAGIKQEPKEQLAALYYQNTLDLFFGTGESKE*

BS03662.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG3358-PG 291 CG3358-PG 1..291 1..291 1559 100 Plus
CG3358-PF 291 CG3358-PF 1..291 1..291 1559 100 Plus
CG3358-PE 291 CG3358-PE 1..291 1..291 1559 100 Plus
CG3308-PA 319 CG3308-PA 47..316 10..283 272 31.4 Plus