Clone BS03663 Report

Search the DGRC for BS03663

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:36
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptProsbeta5-RA
Protein status:BS03663.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS03663.3prime Sequence

879 bp (845 high quality bases) assembled on 2005-12-01

> BS03663.3prime
ATGGTCTAGAAAGCTTCTACTTAGCGGCCTGCTGCTTCAACTGCTCCTGG
TACATGTAGTGCAGCTCCATGCAGTCGGTGTTGGAGATGTTTACCCAGCC
GTCCTCCTTAATGTGATACACGCGAATGATACCACCGGAGTAGGCATCCC
TGAAGGTGGCATGGTAGATGGCGCGACGTCCCAGCTCCTGGGCCTCCTTG
TCCTCCAGGTCCCAATGATAGCCAGAGTCCAGGACACCGTAGGCGTACAG
CGATCCACTACCAACAGAGAACAAATTGCCAGGCGTGCGAGATCCCTCGG
AGTCCACATAGTAGAGGCCTGGACCACGCTTATCGTAACCGGCCAGCATC
ATGCCCATGCTCAGACCCATTCCCTTGTATTCGTGGGCAATGTTGGCCAT
TATCTTGCTGGCGGCGGCCACCGAGATGCGTTCCTTGTTTCGAAGCTCGT
GAAGGCGGCATTCCTTCGAAAGGACCCTGTCCCAGTAAACGCAATCGGCT
GCGCCACCGGCCAAGGTGCCCAGCATGAACTGATTGATCTCCACGATCTT
CTTCATCGACTGGGAGCCAATGTACGATCCACCCGTGGCACGGGAATCGA
CTGCCAGGAGAACGCCGCCCTTGAACTTGAAGCCCAACGTTGTGGTGCCG
TGATCGAAGTTGATTTTGACGCCGGTCTTGTCGCCATTGGCCTGGATCTG
ATTAAGGTTGTGCAGGGGGTTCTCGAATGGCGGAGCAGCCAGTGTGTAGG
GATTGGCCAGATTGCACATAAGCCCTTTTTGCTCTTCCTCCACATCCGCC
GATGACCAGGCATTGGGCCGCATGTACGGAGCATTCGATATCTTGCAGAT
TTCAGCTAAAGCCATGTCGACTGATAACT

BS03663.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG12323-PB 849 Prosbeta5-RB 1..849 865..17 4245 100 Minus
CG12323-PA 849 Prosbeta5-RA 1..849 865..17 4245 100 Minus
CG31742-PA 840 CG31742-RA 478..523 382..337 155 93.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:01:55
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta5-RA 1139 CG12323-RA 96..945 865..16 4250 100 Minus
Prosbeta5-RB 1076 CG12323-RB 33..882 865..16 4250 100 Minus
Prosbeta5R1-RA 1107 CG9868-RA 373..609 575..339 255 74.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10820282..10820984 718..16 3515 100 Minus
2R 25286936 2R 10820073..10820219 865..719 735 100 Minus
2R 25286936 2R 23309152..23309388 339..575 255 73.8 Plus
2L 23513712 2L 17990976..17991021 382..337 185 93.5 Minus
Blast to na_te.dros performed on 2015-02-11 11:01:53 has no hits.

BS03663.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:35 Download gff for BS03663.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12323-PA 1..849 17..865 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:17 Download gff for BS03663.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12323-PA 1..849 17..865 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:11:02 Download gff for BS03663.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta5-RB 31..889 5..868 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:40:56 Download gff for BS03663.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta5-RB 31..889 5..868 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:40:56 Download gff for BS03663.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10820071..10820219 719..868 99 -> Minus
2R 10820282..10820991 5..718 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:11:02 Download gff for BS03663.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6707576..6707724 719..868 99 -> Minus
arm_2R 6707787..6708496 5..718 99   Minus

BS03663.5prime Sequence

863 bp (811 high quality bases) assembled on 2005-12-01

> BS03663.5prime
GAAGTTATCAGTCGACATGGCTTTAGCTGAAATCTGCAAGATATCGAATG
CTCCGTACATGCGGCCCAATGCCTGGTCATCGGCGGATGTGGAGGAAGAG
CAAAAAGGGCTTATGTGCAATCTGGCCAATCCCTACACACTGGCTGCTCC
GCCATTCGAGAACCCCCTGCACAACCTTAATCAGATCCAGGCCAATGGCG
ACAAGACCGGCGTCAAAATCAACTTCGATCACGGCACCACAACGTTGGGC
TTCAAGTTCAAGGGCGGCGTTCTCCTGGCAGTCGATTCCCGTGCCACGGG
TGGATCGTACATTGGCTCCCAGTCGATGAAGAAGATCGTGGAGATCAATC
AGTTCATGCTGGGCACCTTGGCCGGTGGCGCAGCCGATTGCGTTTACTGG
GACAGGGTCCTTTCGAAGGAATGCCGCCTTCACGAGCTTCGAAACAAGGA
ACGCATCTCGGTGGCCGCCGCCAGCAAGATAATGGCCAACATTGCCCACG
AATACAAGGGAATGGGTCTGAGCATGGGCATGATGCTGGCCGGTTACGAT
AAGCGTGGTCCAGGCCTCTACTATGTGGACTCCGAGGGATCTCGCACGCC
TGGCAATTTGTTCTCTGTTGGTAGTGGATCGCTGTACGCCTACGGTGTCC
TGGACTCTGGCTATCATTGGGACCTGGAGGACAAGGAGGCCCAGGAGCTG
GGACGTCGCGCCATCTACCATGCCACCTTCAGGGATGCCTACTCCGGTGG
TATCATTCGCGTGTATCACATTAAGGAGGACGGCTGGGTAAACATCTCCA
ACACCGACTGCATGGAGCTGCACTACATGTACCAGGAGCAGTTGAAGCAG
CAGGCCGCTAAGT

BS03663.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG12323-PB 849 Prosbeta5-RB 1..847 17..863 4235 100 Plus
CG12323-PA 849 Prosbeta5-RA 1..847 17..863 4235 100 Plus
CG31742-PA 840 CG31742-RA 478..523 500..545 155 93.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta5-RA 1139 CG12323-RA 96..942 17..863 4235 100 Plus
Prosbeta5-RB 1076 CG12323-RB 33..879 17..863 4235 100 Plus
Prosbeta5R1-RA 1107 CG9868-RA 373..609 307..543 255 74.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10820282..10820981 164..863 3500 100 Plus
2R 25286936 2R 10820073..10820219 17..163 735 100 Plus
2R 25286936 2R 23309152..23309388 543..307 255 73.8 Minus
2L 23513712 2L 17990976..17991021 500..545 185 93.5 Plus
Blast to na_te.dros performed on 2015-02-04 03:49:53 has no hits.

BS03663.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:29:36 Download gff for BS03663.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12323-PA 1..847 17..863 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:45:18 Download gff for BS03663.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12323-PA 1..847 17..863 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:04:28 Download gff for BS03663.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta5-RB 31..879 14..863 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:47:02 Download gff for BS03663.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta5-RB 31..879 14..863 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:47:02 Download gff for BS03663.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10820071..10820219 14..163 99 -> Plus
2R 10820282..10820981 164..863 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:04:28 Download gff for BS03663.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6707576..6707724 14..163 99 -> Plus
arm_2R 6707787..6708486 164..863 100   Plus

BS03663.complete Sequence

881 bp (881 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634743

> BS03663.complete
GAAGTTATCAGTCGACATGGCTTTAGCTGAAATCTGCAAGATATCGAATG
CTCCGTACATGCGGCCCAATGCCTGGTCATCGGCGGATGTGGAGGAAGAG
CAAAAAGGGCTTATGTGCAATCTGGCCAATCCCTACACACTGGCTGCTCC
GCCATTCGAGAACCCCCTGCACAACCTTAATCAGATCCAGGCCAATGGCG
ACAAGACCGGCGTCAAAATCAACTTCGATCACGGCACCACAACGTTGGGC
TTCAAGTTCAAGGGCGGCGTTCTCCTGGCAGTCGATTCCCGTGCCACGGG
TGGATCGTACATTGGCTCCCAGTCGATGAAGAAGATCGTGGAGATCAATC
AGTTCATGCTGGGCACCTTGGCCGGTGGCGCAGCCGATTGCGTTTACTGG
GACAGGGTCCTTTCGAAGGAATGCCGCCTTCACGAGCTTCGAAACAAGGA
ACGCATCTCGGTGGCCGCCGCCAGCAAGATAATGGCCAACATTGCCCACG
AATACAAGGGAATGGGTCTGAGCATGGGCATGATGCTGGCCGGTTACGAT
AAGCGTGGTCCAGGCCTCTACTATGTGGACTCCGAGGGATCTCGCACGCC
TGGCAATTTGTTCTCTGTTGGTAGTGGATCGCTGTACGCCTACGGTGTCC
TGGACTCTGGCTATCATTGGGACCTGGAGGACAAGGAGGCCCAGGAGCTG
GGACGTCGCGCCATCTACCATGCCACCTTCAGGGATGCCTACTCCGGTGG
TATCATTCGCGTGTATCACATTAAGGAGGACGGCTGGGTAAACATCTCCA
ACACCGACTGCATGGAGCTGCACTACATGTACCAGGAGCAGTTGAAGCAG
CAGGCCGCTAAGTAGAAGCTTTCTAGACCAT

BS03663.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:33:03
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta5-RA 849 CG12323-PA 1..849 17..865 4245 100 Plus
Prosbeta5-RB 849 CG12323-PB 1..849 17..865 4245 100 Plus
Prosbeta5R1-RA 948 CG9868-PA 285..521 307..543 255 73.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:33:04
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta5-RA 1139 CG12323-RA 96..945 17..866 4250 100 Plus
Prosbeta5-RB 1076 CG12323-RB 33..882 17..866 4250 100 Plus
Prosbeta5R1-RA 1107 CG9868-RA 373..609 307..543 255 73.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:33:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10820282..10820984 164..866 3515 100 Plus
2R 25286936 2R 10820073..10820219 17..163 735 100 Plus
2R 25286936 2R 23309152..23309388 543..307 255 73.8 Minus
2L 23513712 2L 17990976..17991021 500..545 185 93.5 Plus
Blast to na_te.dros performed on 2014-11-27 14:33:02 has no hits.

BS03663.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:28:52 Download gff for BS03663.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta5-RA 1..849 17..865 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:12:03 Download gff for BS03663.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta5-RA 91..949 14..877 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:01 Download gff for BS03663.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta5-RB 33..881 17..865 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:28:52 Download gff for BS03663.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta5-RA 91..949 14..877 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:51 Download gff for BS03663.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta5-RB 33..881 17..865 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:51 Download gff for BS03663.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10820073..10820219 17..163 100 -> Plus
2R 10820282..10820983 164..865 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:01 Download gff for BS03663.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6707578..6707724 17..163 100 -> Plus
arm_2R 6707787..6708488 164..865 100   Plus

BS03663.pep Sequence

Translation from 16 to 864

> BS03663.pep
MALAEICKISNAPYMRPNAWSSADVEEEQKGLMCNLANPYTLAAPPFENP
LHNLNQIQANGDKTGVKINFDHGTTTLGFKFKGGVLLAVDSRATGGSYIG
SQSMKKIVEINQFMLGTLAGGAADCVYWDRVLSKECRLHELRNKERISVA
AASKIMANIAHEYKGMGLSMGMMLAGYDKRGPGLYYVDSEGSRTPGNLFS
VGSGSLYAYGVLDSGYHWDLEDKEAQELGRRAIYHATFRDAYSGGIIRVY
HIKEDGWVNISNTDCMELHYMYQEQLKQQAAK*

BS03663.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta5-PA 282 CG12323-PA 1..282 1..282 1493 100 Plus
Prosbeta5-PB 282 CG12323-PB 1..282 1..282 1493 100 Plus
Prosbeta5R1-PA 315 CG9868-PA 1..270 1..272 882 61.2 Plus
Prosbeta5R2-PB 279 CG31742-PB 1..277 1..279 775 51.8 Plus
Prosbeta5R2-PA 279 CG31742-PA 1..277 1..279 775 51.8 Plus